Wall clock time and date at job start Tue Mar 31 2020 03:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36447 * 124.84418 * 2 1 4 4 C 1.34496 * 108.85269 * 180.02562 * 3 2 1 5 5 C 1.46685 * 106.33077 * 0.02562 * 4 3 2 6 6 C 1.47260 * 126.94352 * 179.97438 * 5 4 3 7 7 O 1.21627 * 120.00346 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99961 * 0.02562 * 6 5 4 9 9 C 1.46496 * 120.00371 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47280 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.91790 * 51.10268 * 10 9 8 12 12 C 1.54904 * 111.00688 * 287.19860 * 10 9 8 13 13 N 1.47435 * 104.83391 * 204.91696 * 12 10 9 14 14 C 1.36934 * 125.64724 * 204.16628 * 13 12 10 15 15 H 1.08001 * 120.00082 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99885 * 179.97438 * 14 13 12 17 17 N 1.31622 * 120.00122 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00256 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46807 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47389 * 119.99675 * 18 16 14 21 21 H 1.48506 * 109.47318 * 240.00098 * 18 16 14 22 22 C 1.47022 * 108.70089 * 24.12919 * 13 12 10 23 23 C 1.54322 * 107.27269 * 358.93984 * 22 13 12 24 24 H 1.09002 * 110.71963 * 219.44477 * 23 22 13 25 25 O 1.42896 * 110.71801 * 96.34675 * 23 22 13 26 26 C 1.34652 * 124.85140 * 180.31993 * 2 1 3 27 27 H 1.08997 * 109.47410 * 89.96921 * 1 2 3 28 28 H 1.09004 * 109.47040 * 209.96971 * 1 2 3 29 29 H 1.09004 * 109.47188 * 329.96955 * 1 2 3 30 30 H 1.07998 * 125.58074 * 0.02562 * 3 2 1 31 31 H 1.07991 * 126.83398 * 180.02562 * 4 3 2 32 32 H 0.97005 * 119.99874 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.47035 * 60.00168 * 9 8 6 34 34 H 1.08997 * 109.47364 * 300.00303 * 9 8 6 35 35 H 1.08997 * 110.37110 * 86.08075 * 12 10 9 36 36 H 1.09005 * 110.37140 * 323.74975 * 12 10 9 37 37 H 0.96995 * 120.00311 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.87665 * 239.52284 * 22 13 12 39 39 H 1.08996 * 110.00949 * 118.43459 * 22 13 12 40 40 H 0.96702 * 113.99631 * 63.84596 * 25 23 22 41 41 H 1.07998 * 125.80762 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2446 1.1198 0.0000 4 6 3.5375 0.7493 -0.0006 5 6 3.5462 -0.7175 -0.0016 6 6 4.7284 -1.5956 -0.0030 7 8 4.5886 -2.8038 -0.0042 8 7 5.9653 -1.0604 -0.0030 9 6 7.1414 -1.9339 -0.0038 10 6 8.4109 -1.0800 -0.0042 11 1 8.3774 -0.3325 0.7884 12 6 8.6323 -0.4149 -1.3856 13 7 10.0842 -0.1690 -1.4578 14 6 10.6952 0.7807 -2.2322 15 1 10.1021 1.4283 -2.8609 16 6 12.0770 0.9111 -2.2092 17 7 12.7998 0.1223 -1.4426 18 14 12.9107 2.2062 -3.2661 19 1 11.8831 2.9575 -4.0309 20 1 13.6653 3.1441 -2.3967 21 1 13.8465 1.5461 -4.2117 22 6 10.7672 -1.1118 -0.5599 23 6 9.6778 -1.9669 0.1211 24 1 9.9239 -2.1422 1.1684 25 8 9.5024 -3.2056 -0.5694 26 6 2.2345 -1.1050 -0.0062 27 1 -0.3634 0.0006 -1.0276 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3634 0.8897 0.5143 30 1 1.8828 2.1374 0.0004 31 1 4.3980 1.4018 -0.0003 32 1 6.0769 -0.0968 -0.0016 33 1 7.1265 -2.5625 -0.8942 34 1 7.1270 -2.5636 0.8857 35 1 8.0849 0.5258 -1.4459 36 1 8.3214 -1.0877 -2.1849 37 1 13.7654 0.2132 -1.4267 38 1 11.3324 -0.5630 0.1933 39 1 11.4377 -1.7528 -1.1323 40 1 10.2812 -3.7786 -0.5532 41 1 1.8768 -2.1240 -0.0123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957975322.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:47 Heat of formation + Delta-G solvation = -6.075957 kcal Electronic energy + Delta-G solvation = -23135.174332 eV Core-core repulsion = 19630.903076 eV Total energy + Delta-G solvation = -3504.271256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.32888 -39.10632 -38.04296 -34.79619 -34.41440 -33.03570 -31.98729 -29.73804 -29.21395 -27.77573 -26.85999 -25.30668 -23.66668 -22.10126 -20.43398 -20.20027 -19.88129 -19.25168 -17.96362 -17.25288 -16.40401 -15.68879 -15.66058 -15.33382 -14.79043 -14.74971 -14.28289 -13.97172 -13.65879 -13.47910 -13.26438 -13.11706 -12.78268 -12.66683 -12.53103 -12.44593 -12.15004 -11.76656 -11.31642 -11.17820 -10.80459 -10.56838 -10.39963 -10.03278 -9.97864 -9.77472 -9.58782 -9.12321 -8.85343 -8.66423 -8.63695 -8.40452 -6.82833 -5.71890 -3.04508 1.76469 2.30373 2.60545 3.40071 3.45706 3.48109 3.63497 3.74814 4.39223 4.49303 4.72048 4.73895 4.78199 4.82717 4.99127 5.17794 5.26188 5.35396 5.41378 5.50579 5.60651 5.67287 5.76935 5.94575 6.00319 6.17087 6.20388 6.47314 6.49863 6.60155 6.62936 6.78732 6.88427 6.97924 7.03067 7.42788 7.52025 7.77263 7.87729 8.23932 8.29804 8.58804 9.21385 9.82107 10.48205 11.40329 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021495 B = 0.003225 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.328765 B = 8679.070028 C = 9771.913242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.021 4.021 4 C -0.167 4.167 5 C -0.230 4.230 6 C 0.588 3.412 7 O -0.559 6.559 8 N -0.722 5.722 9 C 0.143 3.857 10 C -0.108 4.108 11 H 0.088 0.912 12 C 0.145 3.855 13 N -0.604 5.604 14 C -0.224 4.224 15 H 0.079 0.921 16 C -0.011 4.011 17 N -0.925 5.925 18 Si 0.913 3.087 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.153 3.847 23 C 0.082 3.918 24 H 0.056 0.944 25 O -0.564 6.564 26 C 0.070 3.930 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.166 0.834 31 H 0.147 0.853 32 H 0.399 0.601 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.026 0.974 37 H 0.251 0.749 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.375 0.625 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.585 0.222 5.936 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.147 4.147 4 C -0.191 4.191 5 C -0.240 4.240 6 C 0.376 3.624 7 O -0.439 6.439 8 N -0.372 5.372 9 C 0.020 3.980 10 C -0.128 4.128 11 H 0.106 0.894 12 C 0.019 3.981 13 N -0.330 5.330 14 C -0.352 4.352 15 H 0.097 0.903 16 C -0.207 4.207 17 N -0.574 5.574 18 Si 0.743 3.257 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.028 3.972 23 C 0.022 3.978 24 H 0.074 0.926 25 O -0.369 6.369 26 C -0.065 4.065 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.183 0.817 31 H 0.165 0.835 32 H 0.233 0.767 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.222 0.778 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -22.400 -0.271 5.776 23.134 hybrid contribution 1.210 1.046 -0.447 1.661 sum -21.189 0.775 5.329 21.863 Atomic orbital electron populations 1.22101 0.77033 1.04563 1.03504 1.43608 1.06691 1.05976 1.56342 1.21739 0.90604 0.91221 1.11112 1.22110 0.96284 0.93322 1.07390 1.20437 0.92673 0.93391 1.17458 1.17351 0.82415 0.86954 0.75664 1.90754 1.86722 1.14770 1.51684 1.45889 1.05590 1.10590 1.75134 1.21126 0.82104 0.92164 1.02649 1.22667 0.92695 0.97055 1.00389 0.89362 1.21591 0.86994 0.96625 0.92909 1.44396 0.99683 1.38860 1.50062 1.19130 0.89855 1.08743 1.17459 0.90319 1.24796 0.96147 0.99651 1.00091 1.69943 1.04882 1.40371 1.42165 0.86024 0.79398 0.80724 0.79507 1.20496 1.21799 1.21793 1.21855 0.91081 0.91138 0.93143 1.23123 0.95966 0.84393 0.94290 0.92602 1.86407 1.41828 1.30160 1.78523 1.21769 0.89862 0.91680 1.03201 0.90706 0.89657 0.89655 0.81667 0.83522 0.76651 0.90515 0.91913 0.94476 0.95638 0.93836 0.92998 0.93292 0.77835 0.80908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 11.03 59.85 0.66 0.95 16 2 N -0.45 -3.84 3.09 -124.52 -0.38 -4.23 16 3 C -0.02 -0.18 11.34 -16.82 -0.19 -0.37 16 4 C -0.17 -1.82 10.56 -37.50 -0.40 -2.21 16 5 C -0.23 -3.06 6.29 -103.35 -0.65 -3.71 16 6 C 0.59 9.54 7.81 -12.59 -0.10 9.44 16 7 O -0.56 -10.93 16.91 5.25 0.09 -10.84 16 8 N -0.72 -10.90 5.50 -61.44 -0.34 -11.24 16 9 C 0.14 2.41 4.61 -4.05 -0.02 2.39 16 10 C -0.11 -1.93 2.98 -88.47 -0.26 -2.19 16 11 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 12 C 0.14 3.06 6.64 -2.53 -0.02 3.05 16 13 N -0.60 -15.50 3.39 -170.07 -0.58 -16.08 16 14 C -0.22 -6.26 10.28 -15.06 -0.15 -6.42 16 15 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 16 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 17 N -0.93 -27.07 10.31 55.49 0.57 -26.50 16 18 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 C 0.15 3.66 5.14 -3.06 -0.02 3.65 16 23 C 0.08 1.55 4.08 -24.89 -0.10 1.45 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 O -0.56 -10.25 12.26 -35.23 -0.43 -10.68 16 26 C 0.07 0.78 11.12 -16.84 -0.19 0.59 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.25 8.13 -51.93 -0.42 -0.17 16 29 H 0.08 0.21 8.13 -51.93 -0.42 -0.21 16 30 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 31 H 0.15 1.38 7.69 -52.49 -0.40 0.97 16 32 H 0.40 5.23 7.60 -40.82 -0.31 4.92 16 33 H 0.08 1.47 7.56 -51.93 -0.39 1.08 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.03 0.58 7.91 -51.93 -0.41 0.17 16 37 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.05 1.36 7.38 -51.93 -0.38 0.97 16 39 H 0.05 1.30 7.43 -51.93 -0.39 0.91 16 40 H 0.37 5.43 9.12 45.56 0.42 5.85 16 41 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -35.82 343.60 -7.66 -43.49 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.22 Total: 7.56 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -1.53 Total: 6.21 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.73 Total: -58.04 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.34 Total: -21.53 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.82 -7.66 -43.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957975322.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.410 kcal (2) G-P(sol) polarization free energy of solvation -35.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds