Wall clock time and date at job start Tue Mar 31 2020 03:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36447 * 124.84418 * 2 1 4 4 C 1.34496 * 108.85269 * 180.02562 * 3 2 1 5 5 C 1.46685 * 106.33077 * 0.02562 * 4 3 2 6 6 C 1.47260 * 126.94352 * 179.97438 * 5 4 3 7 7 O 1.21627 * 120.00346 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99961 * 0.02562 * 6 5 4 9 9 C 1.46496 * 120.00371 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47280 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.91790 * 51.10268 * 10 9 8 12 12 C 1.54904 * 111.00688 * 287.19860 * 10 9 8 13 13 N 1.47435 * 104.83391 * 204.91696 * 12 10 9 14 14 C 1.36934 * 125.64724 * 204.16628 * 13 12 10 15 15 H 1.08001 * 120.00082 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99885 * 179.97438 * 14 13 12 17 17 N 1.31622 * 120.00122 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00256 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46807 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47389 * 119.99675 * 18 16 14 21 21 H 1.48506 * 109.47318 * 240.00098 * 18 16 14 22 22 C 1.47022 * 108.70089 * 24.12919 * 13 12 10 23 23 C 1.54322 * 107.27269 * 358.93984 * 22 13 12 24 24 H 1.09002 * 110.71963 * 219.44477 * 23 22 13 25 25 O 1.42896 * 110.71801 * 96.34675 * 23 22 13 26 26 C 1.34652 * 124.85140 * 180.31993 * 2 1 3 27 27 H 1.08997 * 109.47410 * 89.96921 * 1 2 3 28 28 H 1.09004 * 109.47040 * 209.96971 * 1 2 3 29 29 H 1.09004 * 109.47188 * 329.96955 * 1 2 3 30 30 H 1.07998 * 125.58074 * 0.02562 * 3 2 1 31 31 H 1.07991 * 126.83398 * 180.02562 * 4 3 2 32 32 H 0.97005 * 119.99874 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.47035 * 60.00168 * 9 8 6 34 34 H 1.08997 * 109.47364 * 300.00303 * 9 8 6 35 35 H 1.08997 * 110.37110 * 86.08075 * 12 10 9 36 36 H 1.09005 * 110.37140 * 323.74975 * 12 10 9 37 37 H 0.96995 * 120.00311 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.87665 * 239.52284 * 22 13 12 39 39 H 1.08996 * 110.00949 * 118.43459 * 22 13 12 40 40 H 0.96702 * 113.99631 * 63.84596 * 25 23 22 41 41 H 1.07998 * 125.80762 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2446 1.1198 0.0000 4 6 3.5375 0.7493 -0.0006 5 6 3.5462 -0.7175 -0.0016 6 6 4.7284 -1.5956 -0.0030 7 8 4.5886 -2.8038 -0.0042 8 7 5.9653 -1.0604 -0.0030 9 6 7.1414 -1.9339 -0.0038 10 6 8.4109 -1.0800 -0.0042 11 1 8.3774 -0.3325 0.7884 12 6 8.6323 -0.4149 -1.3856 13 7 10.0842 -0.1690 -1.4578 14 6 10.6952 0.7807 -2.2322 15 1 10.1021 1.4283 -2.8609 16 6 12.0770 0.9111 -2.2092 17 7 12.7998 0.1223 -1.4426 18 14 12.9107 2.2062 -3.2661 19 1 11.8831 2.9575 -4.0309 20 1 13.6653 3.1441 -2.3967 21 1 13.8465 1.5461 -4.2117 22 6 10.7672 -1.1118 -0.5599 23 6 9.6778 -1.9669 0.1211 24 1 9.9239 -2.1422 1.1684 25 8 9.5024 -3.2056 -0.5694 26 6 2.2345 -1.1050 -0.0062 27 1 -0.3634 0.0006 -1.0276 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3634 0.8897 0.5143 30 1 1.8828 2.1374 0.0004 31 1 4.3980 1.4018 -0.0003 32 1 6.0769 -0.0968 -0.0016 33 1 7.1265 -2.5625 -0.8942 34 1 7.1270 -2.5636 0.8857 35 1 8.0849 0.5258 -1.4459 36 1 8.3214 -1.0877 -2.1849 37 1 13.7654 0.2132 -1.4267 38 1 11.3324 -0.5630 0.1933 39 1 11.4377 -1.7528 -1.1323 40 1 10.2812 -3.7786 -0.5532 41 1 1.8768 -2.1240 -0.0123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957975322.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:46 Heat of formation + Delta-G solvation = -33.286069 kcal Electronic energy + Delta-G solvation = -23136.354251 eV Core-core repulsion = 19630.903076 eV Total energy + Delta-G solvation = -3505.451175 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.09058 -40.47105 -39.56087 -36.40055 -35.96352 -34.02759 -33.52388 -31.37275 -30.08891 -29.44957 -27.78798 -26.90819 -25.20338 -23.24290 -22.13966 -21.37375 -20.99717 -20.40455 -19.11946 -18.84845 -18.01880 -16.91417 -16.78239 -16.42449 -16.40848 -15.94140 -15.68983 -15.36488 -15.09875 -14.78092 -14.43116 -14.37804 -14.11923 -13.87747 -13.54335 -13.26100 -13.13187 -13.10542 -12.97865 -12.91365 -12.68277 -12.29737 -12.07336 -11.89107 -11.75933 -11.55438 -10.92358 -10.78080 -10.72168 -10.07047 -9.47417 -9.25116 -8.90618 -7.85475 -5.20708 0.80668 1.46723 1.47772 1.56067 1.58102 1.95443 2.48607 2.49404 2.63513 3.28653 3.37021 3.58665 3.90545 3.93817 4.02750 4.03315 4.05695 4.12297 4.35599 4.45453 4.49957 4.59006 4.63789 4.67674 4.77547 4.86019 4.93485 5.01397 5.05375 5.18299 5.34993 5.42728 5.48609 5.56746 5.70633 5.80111 6.10279 6.18021 6.38859 6.71042 6.94372 7.09784 7.37771 7.75985 8.40941 9.25124 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021495 B = 0.003225 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.328765 B = 8679.070028 C = 9771.913242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.443 5.443 3 C -0.009 4.009 4 C -0.187 4.187 5 C -0.267 4.267 6 C 0.584 3.416 7 O -0.602 6.602 8 N -0.715 5.715 9 C 0.159 3.841 10 C -0.091 4.091 11 H 0.108 0.892 12 C 0.144 3.856 13 N -0.624 5.624 14 C -0.240 4.240 15 H 0.083 0.917 16 C -0.067 4.067 17 N -0.952 5.952 18 Si 0.979 3.021 19 H -0.266 1.266 20 H -0.290 1.290 21 H -0.295 1.295 22 C 0.160 3.840 23 C 0.095 3.905 24 H 0.087 0.913 25 O -0.571 6.571 26 C 0.068 3.932 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.202 0.798 31 H 0.156 0.844 32 H 0.410 0.590 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.010 0.990 37 H 0.247 0.753 38 H 0.025 0.975 39 H 0.014 0.986 40 H 0.390 0.610 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.928 1.797 6.364 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.136 4.136 4 C -0.210 4.210 5 C -0.277 4.277 6 C 0.375 3.625 7 O -0.486 6.486 8 N -0.365 5.365 9 C 0.035 3.965 10 C -0.111 4.111 11 H 0.126 0.874 12 C 0.019 3.981 13 N -0.351 5.351 14 C -0.369 4.369 15 H 0.100 0.900 16 C -0.260 4.260 17 N -0.601 5.601 18 Si 0.808 3.192 19 H -0.190 1.190 20 H -0.217 1.217 21 H -0.222 1.222 22 C 0.035 3.965 23 C 0.035 3.965 24 H 0.105 0.895 25 O -0.379 6.379 26 C -0.069 4.069 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.218 0.782 31 H 0.173 0.827 32 H 0.246 0.754 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.056 0.944 38 H 0.043 0.957 39 H 0.033 0.967 40 H 0.240 0.760 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -24.786 1.331 6.203 25.585 hybrid contribution 1.838 0.551 -0.615 2.015 sum -22.948 1.882 5.589 23.693 Atomic orbital electron populations 1.22454 0.74179 1.06383 1.04866 1.43933 1.08396 1.05094 1.54358 1.22292 0.89959 0.92622 1.08704 1.22306 0.97877 0.92173 1.08669 1.20379 0.92329 0.94430 1.20611 1.17843 0.83284 0.86820 0.74593 1.90715 1.87319 1.16648 1.53893 1.45769 1.04975 1.10938 1.74858 1.20803 0.82289 0.91881 1.01567 1.22556 0.92666 0.97013 0.98825 0.87388 1.21671 0.84828 0.97223 0.94402 1.44714 1.01700 1.38699 1.49957 1.19509 0.90421 1.09225 1.17734 0.89966 1.25643 0.96832 1.01892 1.01626 1.70153 1.04662 1.41832 1.43495 0.84991 0.78248 0.78219 0.77761 1.18991 1.21658 1.22189 1.21682 0.92141 0.90698 0.91986 1.22981 0.94496 0.83943 0.95128 0.89538 1.86389 1.42923 1.29909 1.78663 1.21913 0.89721 0.92803 1.02500 0.89519 0.88502 0.87340 0.78150 0.82681 0.75379 0.93025 0.91585 0.93074 0.97221 0.94370 0.95723 0.96741 0.76015 0.80361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.29 11.03 127.77 1.41 1.70 16 2 N -0.44 -6.35 3.09 -547.88 -1.69 -8.04 16 3 C -0.01 -0.13 11.34 83.12 0.94 0.81 16 4 C -0.19 -3.74 10.56 23.62 0.25 -3.49 16 5 C -0.27 -6.95 6.29 -19.04 -0.12 -7.07 16 6 C 0.58 19.05 7.81 86.62 0.68 19.72 16 7 O -0.60 -24.06 16.91 -4.12 -0.07 -24.12 16 8 N -0.71 -21.27 5.50 -466.54 -2.56 -23.83 16 9 C 0.16 5.27 4.61 86.38 0.40 5.67 16 10 C -0.09 -3.15 2.98 -9.40 -0.03 -3.18 16 11 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 12 C 0.14 6.06 6.64 86.85 0.58 6.63 16 13 N -0.62 -32.45 3.39 -691.98 -2.35 -34.80 16 14 C -0.24 -13.56 10.28 84.03 0.86 -12.70 16 15 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 16 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 17 N -0.95 -57.03 10.31 21.65 0.22 -56.81 16 18 Si 0.98 45.90 29.55 68.60 2.03 47.93 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 22 C 0.16 7.84 5.14 86.73 0.45 8.29 16 23 C 0.09 3.51 4.08 31.78 0.13 3.64 16 24 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 25 O -0.57 -20.55 12.26 -148.98 -1.83 -22.37 16 26 C 0.07 1.43 11.12 83.92 0.93 2.36 16 27 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.10 0.27 8.13 -2.38 -0.02 0.25 16 29 H 0.11 0.06 8.13 -2.38 -0.02 0.04 16 30 H 0.20 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.16 2.66 7.69 -2.92 -0.02 2.63 16 32 H 0.41 10.32 7.60 -92.70 -0.70 9.62 16 33 H 0.05 2.00 7.56 -2.39 -0.02 1.98 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.01 0.45 7.91 -2.38 -0.02 0.43 16 37 H 0.25 14.36 8.31 -92.71 -0.77 13.58 16 38 H 0.02 1.32 7.38 -2.39 -0.02 1.31 16 39 H 0.01 0.80 7.43 -2.39 -0.02 0.78 16 40 H 0.39 11.18 9.12 -74.06 -0.68 10.50 16 41 H 0.18 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -79.58 343.60 0.36 -79.22 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -0.33 Total: 23.82 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 6.94 Total: 19.02 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -6.38 Total: -123.49 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -1.90 Total: -46.50 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -79.58 0.36 -79.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957975322.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.929 kcal (2) G-P(sol) polarization free energy of solvation -79.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds