Wall clock time and date at job start Tue Mar 31 2020 03:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36447 * 124.85190 * 2 1 4 4 C 1.34486 * 108.85330 * 180.02562 * 3 2 1 5 5 C 1.46682 * 106.33610 * 0.02562 * 4 3 2 6 6 C 1.47265 * 126.94462 * 179.97438 * 5 4 3 7 7 O 1.21623 * 120.00351 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99687 * 0.02562 * 6 5 4 9 9 C 1.46506 * 119.99895 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.46858 * 180.02562 * 9 8 6 11 11 H 1.08996 * 110.64067 * 303.30523 * 10 9 8 12 12 C 1.54320 * 110.72234 * 66.45360 * 10 9 8 13 13 N 1.47029 * 107.27322 * 140.73520 * 12 10 9 14 14 C 1.36933 * 125.64936 * 181.02206 * 13 12 10 15 15 H 1.08003 * 119.99721 * 13.63215 * 14 13 12 16 16 C 1.38816 * 119.99961 * 193.62770 * 14 13 12 17 17 N 1.31616 * 119.99775 * 27.26821 * 16 14 13 18 18 Si 1.86796 * 119.99890 * 207.26642 * 16 14 13 19 19 H 1.48502 * 109.47389 * 60.00434 * 18 16 14 20 20 H 1.48499 * 109.47223 * 300.00034 * 18 16 14 21 21 H 1.48500 * 109.47095 * 180.02562 * 18 16 14 22 22 C 1.47425 * 108.70123 * 1.28326 * 13 12 10 23 23 C 1.55140 * 104.72236 * 335.55406 * 22 13 12 24 24 H 1.08992 * 110.90138 * 155.27569 * 23 22 13 25 25 O 1.42899 * 111.22399 * 279.18013 * 23 22 13 26 26 C 1.34663 * 124.84812 * 180.32227 * 2 1 3 27 27 H 1.09001 * 109.47492 * 89.96850 * 1 2 3 28 28 H 1.09009 * 109.47465 * 209.97121 * 1 2 3 29 29 H 1.09004 * 109.46943 * 329.97019 * 1 2 3 30 30 H 1.07999 * 125.57146 * 0.05029 * 3 2 1 31 31 H 1.08003 * 126.83292 * 180.02562 * 4 3 2 32 32 H 0.96998 * 120.00190 * 359.97438 * 8 6 5 33 33 H 1.08995 * 109.47451 * 59.99349 * 9 8 6 34 34 H 1.09004 * 109.46573 * 299.99734 * 9 8 6 35 35 H 1.08996 * 109.88396 * 21.31395 * 12 10 9 36 36 H 1.09003 * 110.01118 * 260.21543 * 12 10 9 37 37 H 0.97006 * 120.00147 * 5.85176 * 17 16 14 38 38 H 1.08995 * 110.36729 * 94.48746 * 22 13 12 39 39 H 1.08999 * 110.36759 * 216.81246 * 22 13 12 40 40 H 0.96705 * 113.99864 * 292.19978 * 25 23 22 41 41 H 1.07998 * 125.80605 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5374 0.7491 -0.0006 5 6 3.5461 -0.7177 -0.0016 6 6 4.7282 -1.5959 -0.0030 7 8 4.5884 -2.8041 -0.0042 8 7 5.9652 -1.0607 -0.0030 9 6 7.1413 -1.9343 -0.0049 10 6 8.4108 -1.0804 -0.0038 11 1 8.4167 -0.3997 -0.8551 12 6 8.5425 -0.2996 1.3207 13 7 9.9638 -0.3147 1.6970 14 6 10.4974 0.2534 2.8228 15 1 9.8494 0.5707 3.6265 16 6 11.8711 0.4212 2.9312 17 7 12.6048 0.5584 1.8472 18 14 12.6782 0.4523 4.6156 19 1 12.4177 -0.8325 5.3132 20 1 12.1159 1.5716 5.4133 21 1 14.1425 0.6432 4.4593 22 6 10.7201 -1.0373 0.6581 23 6 9.6786 -1.9750 -0.0074 24 1 9.9763 -2.2266 -1.0253 25 8 9.4743 -3.1561 0.7705 26 6 2.2344 -1.1051 -0.0062 27 1 -0.3634 0.0006 -1.0277 28 1 -0.3634 -0.8903 0.5134 29 1 -0.3633 0.8898 0.5143 30 1 1.8828 2.1373 0.0008 31 1 4.3981 1.4016 -0.0003 32 1 6.0768 -0.0972 -0.0024 33 1 7.1260 -2.5623 -0.8957 34 1 7.1271 -2.5647 0.8842 35 1 7.9485 -0.7827 2.0965 36 1 8.2066 0.7281 1.1829 37 1 12.1786 0.6276 0.9786 38 1 11.1251 -0.3370 -0.0725 39 1 11.5218 -1.6215 1.1097 40 1 10.2398 -3.7464 0.7977 41 1 1.8766 -2.1241 -0.0123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957975323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:50 Heat of formation + Delta-G solvation = -7.357842 kcal Electronic energy + Delta-G solvation = -23227.967714 eV Core-core repulsion = 19723.640871 eV Total energy + Delta-G solvation = -3504.326843 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.35481 -39.21345 -38.19618 -34.91958 -34.58583 -33.07636 -32.12538 -29.70846 -29.22220 -27.99016 -26.91156 -25.14153 -23.71002 -22.16979 -20.53119 -20.27502 -19.80820 -19.33492 -18.02018 -17.65026 -16.79447 -15.78553 -15.68321 -15.43041 -14.89439 -14.46986 -14.30748 -14.25265 -13.67815 -13.52601 -13.29130 -13.28058 -13.06191 -12.78853 -12.60270 -12.33426 -12.20082 -12.07392 -11.48044 -10.92855 -10.71811 -10.58914 -10.49309 -10.28681 -9.98542 -9.69214 -9.61500 -9.24991 -8.89549 -8.70579 -8.44451 -8.39045 -6.90776 -6.07186 -3.08430 1.73561 2.27864 2.58221 3.52431 3.57302 3.57414 3.71067 3.74593 4.37755 4.56943 4.66065 4.70109 4.72193 4.80124 4.97574 5.06394 5.18367 5.25953 5.32160 5.32881 5.36748 5.60926 5.74446 5.79795 5.88403 5.98533 6.03539 6.31944 6.36015 6.57335 6.58472 6.71046 6.79814 6.84931 6.88642 6.95744 7.00770 7.78286 7.82674 8.14669 8.50473 8.54034 9.04712 9.84415 10.38775 11.26262 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022902 B = 0.003202 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.309784 B = 8743.541414 C = 9466.125270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.020 4.020 4 C -0.167 4.167 5 C -0.230 4.230 6 C 0.589 3.411 7 O -0.559 6.559 8 N -0.722 5.722 9 C 0.143 3.857 10 C -0.106 4.106 11 H 0.087 0.913 12 C 0.146 3.854 13 N -0.598 5.598 14 C -0.329 4.329 15 H 0.066 0.934 16 C -0.028 4.028 17 N -0.923 5.923 18 Si 1.064 2.936 19 H -0.294 1.294 20 H -0.294 1.294 21 H -0.286 1.286 22 C 0.118 3.882 23 C 0.092 3.908 24 H 0.060 0.940 25 O -0.553 6.553 26 C 0.071 3.929 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.166 0.834 31 H 0.147 0.853 32 H 0.399 0.601 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.021 0.979 37 H 0.267 0.733 38 H 0.032 0.968 39 H 0.057 0.943 40 H 0.374 0.626 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.233 -0.540 -7.301 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.146 4.146 4 C -0.191 4.191 5 C -0.240 4.240 6 C 0.377 3.623 7 O -0.439 6.439 8 N -0.373 5.373 9 C 0.019 3.981 10 C -0.125 4.125 11 H 0.105 0.895 12 C 0.020 3.980 13 N -0.325 5.325 14 C -0.457 4.457 15 H 0.084 0.916 16 C -0.229 4.229 17 N -0.566 5.566 18 Si 0.893 3.107 19 H -0.221 1.221 20 H -0.221 1.221 21 H -0.211 1.211 22 C -0.008 4.008 23 C 0.031 3.969 24 H 0.078 0.922 25 O -0.358 6.358 26 C -0.064 4.064 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.184 0.816 31 H 0.164 0.836 32 H 0.234 0.766 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.038 0.962 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.221 0.779 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -20.770 -0.963 -6.310 21.729 hybrid contribution -0.889 0.411 -0.862 1.305 sum -21.660 -0.552 -7.171 22.823 Atomic orbital electron populations 1.22105 0.76994 1.04651 1.03459 1.43611 1.06713 1.05963 1.56305 1.21737 0.90583 0.91240 1.11042 1.22103 0.96296 0.93308 1.07432 1.20419 0.92652 0.93386 1.17558 1.17350 0.82383 0.86961 0.75600 1.90754 1.86704 1.14762 1.51636 1.45854 1.05565 1.10565 1.75266 1.21150 0.82008 0.92161 1.02760 1.22500 0.93326 0.96859 0.99861 0.89494 1.21316 0.88134 0.95972 0.92542 1.44399 1.01293 1.62975 1.23820 1.19772 0.93326 1.39536 0.93072 0.91640 1.25696 0.93120 0.99180 1.04887 1.70808 1.38644 1.47677 0.99428 0.83538 0.76167 0.76182 0.74771 1.22142 1.22072 1.21125 1.22267 0.93740 0.93091 0.91684 1.23020 0.95359 0.85566 0.92932 0.92240 1.86451 1.41980 1.33158 1.74216 1.21770 0.89841 0.91695 1.03132 0.90725 0.89621 0.89615 0.81638 0.83567 0.76638 0.91892 0.90229 0.95086 0.96154 0.92115 0.95041 0.92466 0.77876 0.80885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 11.03 59.84 0.66 0.95 16 2 N -0.45 -3.86 3.09 -124.53 -0.38 -4.25 16 3 C -0.02 -0.18 11.34 -16.82 -0.19 -0.37 16 4 C -0.17 -1.84 10.56 -37.50 -0.40 -2.24 16 5 C -0.23 -3.08 6.29 -103.35 -0.65 -3.73 16 6 C 0.59 9.60 7.81 -12.59 -0.10 9.50 16 7 O -0.56 -10.94 16.91 5.26 0.09 -10.85 16 8 N -0.72 -10.97 5.40 -61.43 -0.33 -11.30 16 9 C 0.14 2.39 4.60 -4.04 -0.02 2.37 16 10 C -0.11 -1.85 2.93 -88.79 -0.26 -2.11 16 11 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 12 C 0.15 3.13 6.52 -3.06 -0.02 3.11 16 13 N -0.60 -15.46 3.33 -169.93 -0.57 -16.02 16 14 C -0.33 -9.52 10.05 -15.06 -0.15 -9.67 16 15 H 0.07 1.90 7.96 -52.48 -0.42 1.48 16 16 C -0.03 -0.82 5.09 -17.43 -0.09 -0.91 16 17 N -0.92 -27.99 12.82 55.49 0.71 -27.28 16 18 Si 1.06 25.84 30.00 -169.99 -5.10 20.74 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 C 0.12 2.72 4.97 -2.40 -0.01 2.71 16 23 C 0.09 1.67 4.17 -24.45 -0.10 1.57 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 O -0.55 -10.05 12.25 -35.23 -0.43 -10.48 16 26 C 0.07 0.79 11.12 -16.84 -0.19 0.60 16 27 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.26 8.13 -51.92 -0.42 -0.16 16 29 H 0.09 0.22 8.13 -51.93 -0.42 -0.20 16 30 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.15 1.40 7.70 -52.48 -0.40 0.99 16 32 H 0.40 5.30 7.45 -40.82 -0.30 4.99 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.55 7.45 -51.93 -0.39 1.16 16 35 H 0.03 0.71 7.77 -51.93 -0.40 0.30 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.27 8.04 5.83 -40.82 -0.24 7.80 16 38 H 0.03 0.76 6.84 -51.93 -0.36 0.40 16 39 H 0.06 1.44 7.73 -51.93 -0.40 1.04 16 40 H 0.37 5.35 9.12 45.56 0.42 5.77 16 41 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -37.33 342.52 -7.46 -44.79 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.09 Total: 7.71 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.52 Total: 1.78 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.57 Total: -58.84 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.34 Total: -21.33 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.10 Total: 20.74 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.33 -7.46 -44.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957975323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.428 kcal (2) G-P(sol) polarization free energy of solvation -37.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds