Wall clock time and date at job start Tue Mar 31 2020 03:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36447 * 124.85190 * 2 1 4 4 C 1.34486 * 108.85330 * 180.02562 * 3 2 1 5 5 C 1.46682 * 106.33610 * 0.02562 * 4 3 2 6 6 C 1.47265 * 126.94462 * 179.97438 * 5 4 3 7 7 O 1.21623 * 120.00351 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99687 * 0.02562 * 6 5 4 9 9 C 1.46506 * 119.99895 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.46858 * 180.02562 * 9 8 6 11 11 H 1.08996 * 110.64067 * 303.30523 * 10 9 8 12 12 C 1.54320 * 110.72234 * 66.45360 * 10 9 8 13 13 N 1.47029 * 107.27322 * 140.73520 * 12 10 9 14 14 C 1.36933 * 125.64936 * 181.02206 * 13 12 10 15 15 H 1.08003 * 119.99721 * 13.63215 * 14 13 12 16 16 C 1.38816 * 119.99961 * 193.62770 * 14 13 12 17 17 N 1.31616 * 119.99775 * 27.26821 * 16 14 13 18 18 Si 1.86796 * 119.99890 * 207.26642 * 16 14 13 19 19 H 1.48502 * 109.47389 * 60.00434 * 18 16 14 20 20 H 1.48499 * 109.47223 * 300.00034 * 18 16 14 21 21 H 1.48500 * 109.47095 * 180.02562 * 18 16 14 22 22 C 1.47425 * 108.70123 * 1.28326 * 13 12 10 23 23 C 1.55140 * 104.72236 * 335.55406 * 22 13 12 24 24 H 1.08992 * 110.90138 * 155.27569 * 23 22 13 25 25 O 1.42899 * 111.22399 * 279.18013 * 23 22 13 26 26 C 1.34663 * 124.84812 * 180.32227 * 2 1 3 27 27 H 1.09001 * 109.47492 * 89.96850 * 1 2 3 28 28 H 1.09009 * 109.47465 * 209.97121 * 1 2 3 29 29 H 1.09004 * 109.46943 * 329.97019 * 1 2 3 30 30 H 1.07999 * 125.57146 * 0.05029 * 3 2 1 31 31 H 1.08003 * 126.83292 * 180.02562 * 4 3 2 32 32 H 0.96998 * 120.00190 * 359.97438 * 8 6 5 33 33 H 1.08995 * 109.47451 * 59.99349 * 9 8 6 34 34 H 1.09004 * 109.46573 * 299.99734 * 9 8 6 35 35 H 1.08996 * 109.88396 * 21.31395 * 12 10 9 36 36 H 1.09003 * 110.01118 * 260.21543 * 12 10 9 37 37 H 0.97006 * 120.00147 * 5.85176 * 17 16 14 38 38 H 1.08995 * 110.36729 * 94.48746 * 22 13 12 39 39 H 1.08999 * 110.36759 * 216.81246 * 22 13 12 40 40 H 0.96705 * 113.99864 * 292.19978 * 25 23 22 41 41 H 1.07998 * 125.80605 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5374 0.7491 -0.0006 5 6 3.5461 -0.7177 -0.0016 6 6 4.7282 -1.5959 -0.0030 7 8 4.5884 -2.8041 -0.0042 8 7 5.9652 -1.0607 -0.0030 9 6 7.1413 -1.9343 -0.0049 10 6 8.4108 -1.0804 -0.0038 11 1 8.4167 -0.3997 -0.8551 12 6 8.5425 -0.2996 1.3207 13 7 9.9638 -0.3147 1.6970 14 6 10.4974 0.2534 2.8228 15 1 9.8494 0.5707 3.6265 16 6 11.8711 0.4212 2.9312 17 7 12.6048 0.5584 1.8472 18 14 12.6782 0.4523 4.6156 19 1 12.4177 -0.8325 5.3132 20 1 12.1159 1.5716 5.4133 21 1 14.1425 0.6432 4.4593 22 6 10.7201 -1.0373 0.6581 23 6 9.6786 -1.9750 -0.0074 24 1 9.9763 -2.2266 -1.0253 25 8 9.4743 -3.1561 0.7705 26 6 2.2344 -1.1051 -0.0062 27 1 -0.3634 0.0006 -1.0277 28 1 -0.3634 -0.8903 0.5134 29 1 -0.3633 0.8898 0.5143 30 1 1.8828 2.1373 0.0008 31 1 4.3981 1.4016 -0.0003 32 1 6.0768 -0.0972 -0.0024 33 1 7.1260 -2.5623 -0.8957 34 1 7.1271 -2.5647 0.8842 35 1 7.9485 -0.7827 2.0965 36 1 8.2066 0.7281 1.1829 37 1 12.1786 0.6276 0.9786 38 1 11.1251 -0.3370 -0.0725 39 1 11.5218 -1.6215 1.1097 40 1 10.2398 -3.7464 0.7977 41 1 1.8766 -2.1241 -0.0123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957975323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:49 Heat of formation + Delta-G solvation = -35.988153 kcal Electronic energy + Delta-G solvation = -23229.209217 eV Core-core repulsion = 19723.640871 eV Total energy + Delta-G solvation = -3505.568346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.12907 -40.60046 -39.67831 -36.56075 -36.11365 -34.15065 -33.56696 -31.33260 -30.13167 -29.65944 -27.77638 -26.77381 -25.30222 -23.32096 -22.21676 -21.36842 -21.02825 -20.46931 -19.68754 -18.90957 -18.30716 -16.97556 -16.60365 -16.49759 -16.27131 -16.11098 -15.77205 -15.58774 -15.14714 -15.11669 -14.76374 -14.34385 -14.03315 -13.90862 -13.85029 -13.29122 -13.20946 -13.04618 -12.94805 -12.72765 -12.54997 -12.37047 -12.18636 -11.90976 -11.79098 -11.62026 -10.99159 -10.87919 -10.54325 -10.12890 -9.51270 -9.28930 -9.01526 -8.33643 -5.31622 0.76573 1.52258 1.56193 1.64170 1.83462 1.91607 2.42686 2.58902 2.62457 3.15076 3.22918 3.44386 3.75838 3.78363 3.87857 3.98020 4.00900 4.08809 4.28844 4.32301 4.42192 4.48151 4.54579 4.59711 4.70136 4.75501 4.84992 4.88773 5.01423 5.02270 5.09851 5.13671 5.25566 5.47186 5.62376 5.76047 6.06556 6.30716 6.35441 6.64747 6.84282 6.92392 7.32122 7.69356 8.26703 8.99604 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022902 B = 0.003202 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.309784 B = 8743.541414 C = 9466.125270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.443 5.443 3 C -0.008 4.008 4 C -0.188 4.188 5 C -0.268 4.268 6 C 0.584 3.416 7 O -0.601 6.601 8 N -0.716 5.716 9 C 0.157 3.843 10 C -0.090 4.090 11 H 0.115 0.885 12 C 0.145 3.855 13 N -0.622 5.622 14 C -0.345 4.345 15 H 0.055 0.945 16 C -0.076 4.076 17 N -0.946 5.946 18 Si 1.114 2.886 19 H -0.285 1.285 20 H -0.275 1.275 21 H -0.288 1.288 22 C 0.120 3.880 23 C 0.105 3.895 24 H 0.101 0.899 25 O -0.566 6.566 26 C 0.069 3.931 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.202 0.798 31 H 0.154 0.846 32 H 0.409 0.591 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.013 0.987 36 H 0.026 0.974 37 H 0.258 0.742 38 H 0.022 0.978 39 H 0.027 0.973 40 H 0.391 0.609 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.217 0.242 -7.825 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.117 5.117 3 C -0.135 4.135 4 C -0.212 4.212 5 C -0.279 4.279 6 C 0.375 3.625 7 O -0.485 6.485 8 N -0.367 5.367 9 C 0.033 3.967 10 C -0.110 4.110 11 H 0.133 0.867 12 C 0.020 3.980 13 N -0.349 5.349 14 C -0.474 4.474 15 H 0.073 0.927 16 C -0.272 4.272 17 N -0.590 5.590 18 Si 0.938 3.062 19 H -0.212 1.212 20 H -0.201 1.201 21 H -0.214 1.214 22 C -0.006 4.006 23 C 0.044 3.956 24 H 0.119 0.881 25 O -0.374 6.374 26 C -0.068 4.068 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.219 0.781 31 H 0.171 0.829 32 H 0.245 0.755 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.240 0.760 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -22.796 -0.157 -6.847 23.802 hybrid contribution -0.394 0.193 -0.694 0.821 sum -23.190 0.036 -7.541 24.385 Atomic orbital electron populations 1.22463 0.74102 1.06338 1.04991 1.43940 1.08432 1.05063 1.54299 1.22286 0.89912 0.92657 1.08600 1.22291 0.97883 0.92199 1.08810 1.20375 0.92367 0.94404 1.20722 1.17846 0.83264 0.86840 0.74557 1.90713 1.87299 1.16595 1.53847 1.45760 1.05044 1.10896 1.74965 1.20859 0.82251 0.91909 1.01673 1.22443 0.93393 0.96667 0.98452 0.86729 1.21384 0.85718 0.96703 0.94174 1.44674 1.03234 1.63115 1.23862 1.20002 0.93718 1.39539 0.94118 0.92702 1.27037 0.93903 0.98826 1.07429 1.70906 1.38797 1.49747 0.99559 0.82866 0.75079 0.77062 0.71164 1.21176 1.20084 1.21359 1.22272 0.94244 0.93254 0.90827 1.22982 0.93753 0.84722 0.94123 0.88119 1.86434 1.43169 1.33222 1.74550 1.21919 0.89667 0.92835 1.02389 0.89221 0.88581 0.87439 0.78108 0.82858 0.75487 0.91036 0.93247 0.96887 0.95629 0.93150 0.96079 0.95447 0.75999 0.80275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.30 11.03 127.77 1.41 1.71 16 2 N -0.44 -6.46 3.09 -547.89 -1.69 -8.16 16 3 C -0.01 -0.11 11.34 83.12 0.94 0.83 16 4 C -0.19 -3.89 10.56 23.62 0.25 -3.64 16 5 C -0.27 -7.10 6.29 -19.04 -0.12 -7.22 16 6 C 0.58 19.29 7.81 86.62 0.68 19.97 16 7 O -0.60 -24.13 16.91 -4.11 -0.07 -24.20 16 8 N -0.72 -21.63 5.40 -466.52 -2.52 -24.15 16 9 C 0.16 5.19 4.60 86.38 0.40 5.59 16 10 C -0.09 -3.05 2.93 -9.61 -0.03 -3.07 16 11 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 12 C 0.15 6.26 6.52 86.73 0.57 6.82 16 13 N -0.62 -32.67 3.33 -691.52 -2.30 -34.97 16 14 C -0.35 -20.35 10.05 84.03 0.84 -19.50 16 15 H 0.06 3.26 7.96 -2.91 -0.02 3.23 16 16 C -0.08 -4.48 5.09 84.86 0.43 -4.04 16 17 N -0.95 -58.34 12.82 21.65 0.28 -58.06 16 18 Si 1.11 52.52 30.00 68.60 2.06 54.58 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 22 C 0.12 5.57 4.97 86.94 0.43 6.01 16 23 C 0.10 3.67 4.17 32.07 0.13 3.80 16 24 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 25 O -0.57 -20.18 12.25 -148.98 -1.82 -22.00 16 26 C 0.07 1.48 11.12 83.91 0.93 2.41 16 27 H 0.09 0.23 8.14 -2.39 -0.02 0.22 16 28 H 0.10 0.31 8.13 -2.38 -0.02 0.29 16 29 H 0.11 0.11 8.13 -2.38 -0.02 0.09 16 30 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.15 2.75 7.70 -2.91 -0.02 2.73 16 32 H 0.41 10.62 7.45 -92.71 -0.69 9.93 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 1.95 7.45 -2.39 -0.02 1.93 16 35 H 0.01 0.61 7.77 -2.39 -0.02 0.59 16 36 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.26 15.89 5.83 -92.70 -0.54 15.35 16 38 H 0.02 1.04 6.84 -2.39 -0.02 1.02 16 39 H 0.03 1.41 7.73 -2.39 -0.02 1.39 16 40 H 0.39 10.84 9.12 -74.05 -0.68 10.17 16 41 H 0.18 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -83.31 342.52 0.72 -82.59 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -0.09 Total: 24.71 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 6.87 Total: 9.65 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -6.23 Total: -125.33 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -1.89 Total: -46.20 kcal Atomic # 14 Polarization: 52.52 SS G_CDS: 2.06 Total: 54.58 kcal Total: -83.31 0.72 -82.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957975323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.601 kcal (2) G-P(sol) polarization free energy of solvation -83.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds