Wall clock time and date at job start Tue Mar 31 2020 03:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36441 * 124.85134 * 2 1 4 4 C 1.34488 * 108.85895 * 179.72772 * 3 2 1 5 5 C 1.46685 * 106.32738 * 0.37782 * 4 3 2 6 6 C 1.47267 * 126.93769 * 179.88793 * 5 4 3 7 7 O 1.21634 * 119.99575 * 179.68759 * 6 5 4 8 8 N 1.34770 * 120.00126 * 359.68142 * 6 5 4 9 9 C 1.46503 * 119.99968 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47329 * 180.02562 * 9 8 6 11 11 H 1.09004 * 110.91549 * 302.55831 * 10 9 8 12 12 C 1.54917 * 111.00242 * 66.45559 * 10 9 8 13 13 N 1.47421 * 104.83002 * 155.08843 * 12 10 9 14 14 C 1.36936 * 125.64616 * 155.84135 * 13 12 10 15 15 H 1.08001 * 120.00149 * 359.97438 * 14 13 12 16 16 C 1.38822 * 119.99936 * 179.97438 * 14 13 12 17 17 N 1.31623 * 119.99690 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00114 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46839 * 60.00190 * 18 16 14 20 20 H 1.48493 * 109.47110 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47126 * 300.00275 * 18 16 14 22 22 C 1.47021 * 108.70450 * 335.86832 * 13 12 10 23 23 C 1.54326 * 107.27002 * 1.06211 * 22 13 12 24 24 H 1.09000 * 110.72348 * 263.82382 * 23 22 13 25 25 O 1.42908 * 110.71556 * 140.55446 * 23 22 13 26 26 C 1.34653 * 124.84865 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46879 * 270.02178 * 1 2 3 28 28 H 1.08998 * 109.47353 * 30.02157 * 1 2 3 29 29 H 1.09000 * 109.47129 * 150.02644 * 1 2 3 30 30 H 1.08005 * 125.56915 * 0.02562 * 3 2 1 31 31 H 1.08002 * 126.83522 * 180.25188 * 4 3 2 32 32 H 0.96996 * 120.00278 * 0.02562 * 8 6 5 33 33 H 1.09006 * 109.46676 * 60.00540 * 9 8 6 34 34 H 1.08999 * 109.47518 * 300.00805 * 9 8 6 35 35 H 1.09002 * 110.36419 * 273.92650 * 12 10 9 36 36 H 1.08994 * 110.36559 * 36.13399 * 12 10 9 37 37 H 0.97002 * 119.99882 * 180.02562 * 17 16 14 38 38 H 1.08996 * 109.88310 * 120.48076 * 22 13 12 39 39 H 1.09002 * 109.88672 * 241.49116 * 22 13 12 40 40 H 0.96698 * 113.99690 * 66.48080 * 25 23 22 41 41 H 1.07999 * 125.80578 * 0.03731 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7492 0.0060 5 6 3.5462 -0.7176 0.0008 6 6 4.7284 -1.5957 0.0021 7 8 4.5885 -2.8040 0.0029 8 7 5.9653 -1.0605 0.0022 9 6 7.1414 -1.9341 0.0040 10 6 8.4109 -1.0802 0.0043 11 1 8.4288 -0.4092 -0.8544 12 6 8.5481 -0.2898 1.3296 13 7 9.9933 -0.0342 1.4687 14 6 10.5579 0.9846 2.1887 15 1 9.9287 1.6861 2.7164 16 6 11.9389 1.1157 2.2404 17 7 12.7056 0.2610 1.5968 18 14 12.7091 2.5059 3.2219 19 1 12.3064 2.3882 4.6464 20 1 14.1881 2.4257 3.1169 21 1 12.2449 3.8092 2.6823 22 6 10.7280 -1.0539 0.7058 23 6 9.6805 -1.9713 0.0404 24 1 9.5092 -2.8625 0.6442 25 8 10.0871 -2.3260 -1.2829 26 6 2.2345 -1.1050 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5134 30 1 1.8828 2.1373 0.0004 31 1 4.3981 1.4017 0.0114 32 1 6.0769 -0.0970 0.0018 33 1 7.1272 -2.5643 -0.8853 34 1 7.1261 -2.5622 0.8947 35 1 8.0006 0.6508 1.2686 36 1 8.1842 -0.8861 2.1663 37 1 13.6706 0.3524 1.6332 38 1 11.3405 -0.5754 -0.0583 39 1 11.3602 -1.6352 1.3771 40 1 10.8767 -2.8831 -1.3157 41 1 1.8767 -2.1241 0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957975324.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:53 Heat of formation + Delta-G solvation = -7.726088 kcal Electronic energy + Delta-G solvation = -23067.215105 eV Core-core repulsion = 19562.872294 eV Total energy + Delta-G solvation = -3504.342811 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.34202 -39.13796 -38.00494 -35.06539 -34.45963 -33.05478 -32.06184 -29.77784 -29.22799 -27.64373 -26.85088 -25.36449 -23.63783 -22.13145 -20.47042 -20.21981 -19.96349 -19.32517 -18.01138 -16.88619 -16.66325 -15.74105 -15.67838 -15.55758 -15.01714 -14.71520 -14.31090 -14.06691 -13.82203 -13.27513 -13.23950 -13.08763 -12.78048 -12.59736 -12.50524 -12.38476 -12.14100 -11.90402 -11.39901 -11.17637 -10.88310 -10.77596 -10.55797 -10.03539 -9.92778 -9.78076 -9.63416 -9.15748 -8.89061 -8.69648 -8.62619 -8.42890 -6.86739 -5.72829 -3.07060 1.74452 2.29546 2.59429 3.40391 3.44359 3.45818 3.57908 3.71251 4.38534 4.46928 4.71318 4.73333 4.79724 4.81541 4.98623 5.08060 5.23357 5.32849 5.34706 5.49738 5.57046 5.74957 5.76357 5.92029 5.95593 6.10813 6.16952 6.29694 6.44484 6.55897 6.59260 6.72202 6.85651 6.90942 7.02091 7.43288 7.52611 7.77557 7.83605 8.22499 8.25090 8.53946 9.18847 9.79510 10.44361 11.38758 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019865 B = 0.003273 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.183501 B = 8552.564288 C = 9726.354128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.020 4.020 4 C -0.166 4.166 5 C -0.230 4.230 6 C 0.589 3.411 7 O -0.561 6.561 8 N -0.719 5.719 9 C 0.136 3.864 10 C -0.107 4.107 11 H 0.089 0.911 12 C 0.142 3.858 13 N -0.603 5.603 14 C -0.230 4.230 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.923 5.923 18 Si 0.914 3.086 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.152 3.848 23 C 0.082 3.918 24 H 0.057 0.943 25 O -0.566 6.566 26 C 0.071 3.929 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.166 0.834 31 H 0.148 0.852 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.024 0.976 37 H 0.253 0.747 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.375 0.625 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.582 -0.786 -4.522 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.146 4.146 4 C -0.190 4.190 5 C -0.240 4.240 6 C 0.377 3.623 7 O -0.441 6.441 8 N -0.369 5.369 9 C 0.012 3.988 10 C -0.127 4.127 11 H 0.107 0.893 12 C 0.016 3.984 13 N -0.330 5.330 14 C -0.358 4.358 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.571 5.571 18 Si 0.744 3.256 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.027 3.973 23 C 0.022 3.978 24 H 0.075 0.925 25 O -0.371 6.371 26 C -0.065 4.065 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.184 0.816 31 H 0.165 0.835 32 H 0.236 0.764 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.222 0.778 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -22.313 -1.175 -4.627 22.818 hybrid contribution 1.042 0.948 0.730 1.586 sum -21.272 -0.227 -3.898 21.627 Atomic orbital electron populations 1.22104 0.77011 1.04579 1.03512 1.43610 1.06704 1.05976 1.56307 1.21742 0.90595 0.91234 1.11070 1.22118 0.96316 0.93307 1.07307 1.20407 0.92619 0.93397 1.17602 1.17359 0.82405 0.86948 0.75539 1.90750 1.86743 1.14781 1.51819 1.45796 1.05349 1.10665 1.75115 1.21323 0.82887 0.92534 1.02076 1.22600 0.92080 0.97483 1.00528 0.89293 1.21601 0.87625 0.96539 0.92678 1.44304 0.99107 1.31480 1.58089 1.19030 0.90009 1.03721 1.23022 0.90309 1.24819 0.96036 0.99119 1.00485 1.69937 1.03646 1.37391 1.46084 0.86166 0.78203 0.81535 0.79657 1.21142 1.21601 1.21123 1.21823 0.91242 0.89322 0.94958 1.23127 0.95003 0.96426 0.83199 0.92545 1.86429 1.49384 1.73352 1.27935 1.21764 0.89847 0.91684 1.03158 0.90688 0.89644 0.89656 0.81641 0.83481 0.76415 0.91343 0.91554 0.93947 0.95871 0.93659 0.92470 0.93671 0.77807 0.80906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.28 11.03 59.85 0.66 0.94 16 2 N -0.45 -3.81 3.09 -124.53 -0.38 -4.19 16 3 C -0.02 -0.18 11.34 -16.83 -0.19 -0.37 16 4 C -0.17 -1.81 10.56 -37.50 -0.40 -2.21 16 5 C -0.23 -3.03 6.29 -103.35 -0.65 -3.68 16 6 C 0.59 9.39 7.81 -12.59 -0.10 9.29 16 7 O -0.56 -10.69 16.91 5.25 0.09 -10.60 16 8 N -0.72 -10.73 5.40 -61.43 -0.33 -11.06 16 9 C 0.14 2.21 5.12 -4.04 -0.02 2.19 16 10 C -0.11 -1.94 2.83 -88.47 -0.25 -2.19 16 11 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 12 C 0.14 2.90 6.41 -2.53 -0.02 2.88 16 13 N -0.60 -15.37 3.39 -170.07 -0.58 -15.94 16 14 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 15 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 16 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 17 N -0.92 -27.04 10.31 55.49 0.57 -26.47 16 18 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.15 3.68 5.15 -3.06 -0.02 3.66 16 23 C 0.08 1.59 3.80 -24.90 -0.09 1.49 16 24 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 25 O -0.57 -10.17 13.39 -35.23 -0.47 -10.64 16 26 C 0.07 0.77 11.12 -16.84 -0.19 0.59 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.21 8.13 -51.93 -0.42 -0.21 16 29 H 0.08 0.25 8.13 -51.93 -0.42 -0.18 16 30 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.15 1.40 7.70 -52.49 -0.40 0.99 16 32 H 0.40 5.29 7.46 -40.82 -0.30 4.99 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.02 0.48 8.00 -51.93 -0.42 0.07 16 37 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.06 1.55 7.30 -51.93 -0.38 1.17 16 39 H 0.05 1.19 7.50 -51.93 -0.39 0.80 16 40 H 0.38 5.24 9.12 45.56 0.42 5.66 16 41 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 344.88 15.07 5.20 5.20 Total: -1.00 -35.53 344.88 -7.68 -43.21 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.24 Total: 7.74 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -1.51 Total: 5.73 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.72 Total: -57.67 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.38 Total: -21.23 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.53 -7.68 -43.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957975324.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.485 kcal (2) G-P(sol) polarization free energy of solvation -35.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds