Wall clock time and date at job start Tue Mar 31 2020 03:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36441 * 124.85134 * 2 1 4 4 C 1.34488 * 108.85895 * 179.72772 * 3 2 1 5 5 C 1.46685 * 106.32738 * 0.37782 * 4 3 2 6 6 C 1.47267 * 126.93769 * 179.88793 * 5 4 3 7 7 O 1.21634 * 119.99575 * 179.68759 * 6 5 4 8 8 N 1.34770 * 120.00126 * 359.68142 * 6 5 4 9 9 C 1.46503 * 119.99968 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47329 * 180.02562 * 9 8 6 11 11 H 1.09004 * 110.91549 * 302.55831 * 10 9 8 12 12 C 1.54917 * 111.00242 * 66.45559 * 10 9 8 13 13 N 1.47421 * 104.83002 * 155.08843 * 12 10 9 14 14 C 1.36936 * 125.64616 * 155.84135 * 13 12 10 15 15 H 1.08001 * 120.00149 * 359.97438 * 14 13 12 16 16 C 1.38822 * 119.99936 * 179.97438 * 14 13 12 17 17 N 1.31623 * 119.99690 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00114 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46839 * 60.00190 * 18 16 14 20 20 H 1.48493 * 109.47110 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47126 * 300.00275 * 18 16 14 22 22 C 1.47021 * 108.70450 * 335.86832 * 13 12 10 23 23 C 1.54326 * 107.27002 * 1.06211 * 22 13 12 24 24 H 1.09000 * 110.72348 * 263.82382 * 23 22 13 25 25 O 1.42908 * 110.71556 * 140.55446 * 23 22 13 26 26 C 1.34653 * 124.84865 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46879 * 270.02178 * 1 2 3 28 28 H 1.08998 * 109.47353 * 30.02157 * 1 2 3 29 29 H 1.09000 * 109.47129 * 150.02644 * 1 2 3 30 30 H 1.08005 * 125.56915 * 0.02562 * 3 2 1 31 31 H 1.08002 * 126.83522 * 180.25188 * 4 3 2 32 32 H 0.96996 * 120.00278 * 0.02562 * 8 6 5 33 33 H 1.09006 * 109.46676 * 60.00540 * 9 8 6 34 34 H 1.08999 * 109.47518 * 300.00805 * 9 8 6 35 35 H 1.09002 * 110.36419 * 273.92650 * 12 10 9 36 36 H 1.08994 * 110.36559 * 36.13399 * 12 10 9 37 37 H 0.97002 * 119.99882 * 180.02562 * 17 16 14 38 38 H 1.08996 * 109.88310 * 120.48076 * 22 13 12 39 39 H 1.09002 * 109.88672 * 241.49116 * 22 13 12 40 40 H 0.96698 * 113.99690 * 66.48080 * 25 23 22 41 41 H 1.07999 * 125.80578 * 0.03731 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7492 0.0060 5 6 3.5462 -0.7176 0.0008 6 6 4.7284 -1.5957 0.0021 7 8 4.5885 -2.8040 0.0029 8 7 5.9653 -1.0605 0.0022 9 6 7.1414 -1.9341 0.0040 10 6 8.4109 -1.0802 0.0043 11 1 8.4288 -0.4092 -0.8544 12 6 8.5481 -0.2898 1.3296 13 7 9.9933 -0.0342 1.4687 14 6 10.5579 0.9846 2.1887 15 1 9.9287 1.6861 2.7164 16 6 11.9389 1.1157 2.2404 17 7 12.7056 0.2610 1.5968 18 14 12.7091 2.5059 3.2219 19 1 12.3064 2.3882 4.6464 20 1 14.1881 2.4257 3.1169 21 1 12.2449 3.8092 2.6823 22 6 10.7280 -1.0539 0.7058 23 6 9.6805 -1.9713 0.0404 24 1 9.5092 -2.8625 0.6442 25 8 10.0871 -2.3260 -1.2829 26 6 2.2345 -1.1050 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5134 30 1 1.8828 2.1373 0.0004 31 1 4.3981 1.4017 0.0114 32 1 6.0769 -0.0970 0.0018 33 1 7.1272 -2.5643 -0.8853 34 1 7.1261 -2.5622 0.8947 35 1 8.0006 0.6508 1.2686 36 1 8.1842 -0.8861 2.1663 37 1 13.6706 0.3524 1.6332 38 1 11.3405 -0.5754 -0.0583 39 1 11.3602 -1.6352 1.3771 40 1 10.8767 -2.8831 -1.3157 41 1 1.8767 -2.1241 0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957975324.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:53 Heat of formation + Delta-G solvation = -34.620579 kcal Electronic energy + Delta-G solvation = -23068.381337 eV Core-core repulsion = 19562.872294 eV Total energy + Delta-G solvation = -3505.509044 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.09525 -40.47202 -39.53434 -36.63766 -35.99350 -34.08777 -33.53692 -31.40725 -30.08566 -29.32192 -27.79307 -26.91340 -25.17313 -23.26766 -22.16141 -21.48957 -20.99824 -20.45669 -19.04692 -18.70008 -18.16570 -17.11588 -16.86928 -16.45016 -16.42210 -16.04064 -15.64326 -15.58629 -14.97388 -14.63602 -14.41630 -14.30112 -13.97355 -13.88497 -13.66196 -13.26190 -13.19530 -13.09320 -13.01740 -12.92776 -12.67268 -12.40404 -12.32142 -11.90339 -11.78117 -11.48549 -11.00338 -10.78401 -10.71116 -10.09804 -9.47958 -9.25457 -8.93137 -7.85289 -5.22036 0.80169 1.47161 1.50670 1.55671 1.56770 1.94496 2.44737 2.49645 2.62394 3.24921 3.35423 3.60025 3.72120 3.90852 4.01470 4.04490 4.12025 4.15478 4.34531 4.41662 4.48014 4.50182 4.61620 4.64655 4.76751 4.77652 4.89858 4.97352 5.05128 5.17281 5.30311 5.41411 5.48377 5.50502 5.71563 5.79788 6.10056 6.17058 6.38487 6.68641 6.89840 7.07706 7.35121 7.74463 8.38430 9.24810 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019865 B = 0.003273 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.183501 B = 8552.564288 C = 9726.354128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.443 5.443 3 C -0.009 4.009 4 C -0.187 4.187 5 C -0.268 4.268 6 C 0.586 3.414 7 O -0.601 6.601 8 N -0.714 5.714 9 C 0.149 3.851 10 C -0.089 4.089 11 H 0.085 0.915 12 C 0.141 3.859 13 N -0.625 5.625 14 C -0.244 4.244 15 H 0.087 0.913 16 C -0.068 4.068 17 N -0.953 5.953 18 Si 0.981 3.019 19 H -0.276 1.276 20 H -0.296 1.296 21 H -0.275 1.275 22 C 0.162 3.838 23 C 0.096 3.904 24 H 0.075 0.925 25 O -0.569 6.569 26 C 0.069 3.931 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.201 0.799 31 H 0.154 0.846 32 H 0.410 0.590 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.028 0.972 37 H 0.247 0.753 38 H 0.020 0.980 39 H 0.014 0.986 40 H 0.393 0.607 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.169 0.489 -4.449 24.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.136 4.136 4 C -0.211 4.211 5 C -0.278 4.278 6 C 0.377 3.623 7 O -0.484 6.484 8 N -0.364 5.364 9 C 0.025 3.975 10 C -0.108 4.108 11 H 0.103 0.897 12 C 0.016 3.984 13 N -0.352 5.352 14 C -0.373 4.373 15 H 0.105 0.895 16 C -0.260 4.260 17 N -0.601 5.601 18 Si 0.809 3.191 19 H -0.202 1.202 20 H -0.222 1.222 21 H -0.201 1.201 22 C 0.036 3.964 23 C 0.036 3.964 24 H 0.093 0.907 25 O -0.376 6.376 26 C -0.068 4.068 27 H 0.105 0.895 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.218 0.782 31 H 0.172 0.828 32 H 0.246 0.754 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.038 0.962 39 H 0.032 0.968 40 H 0.242 0.758 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -24.947 0.125 -4.559 25.360 hybrid contribution 1.746 0.562 0.693 1.961 sum -23.200 0.686 -3.866 23.530 Atomic orbital electron populations 1.22455 0.74164 1.06367 1.04894 1.43935 1.08404 1.05098 1.54341 1.22279 0.89964 0.92633 1.08720 1.22303 0.97849 0.92271 1.08667 1.20369 0.92372 0.94364 1.20698 1.17812 0.83177 0.86827 0.74532 1.90713 1.87289 1.16496 1.53909 1.45701 1.04852 1.10951 1.74914 1.21062 0.82494 0.92164 1.01796 1.22397 0.92441 0.96996 0.99013 0.89655 1.21740 0.85116 0.97636 0.93905 1.44611 1.01380 1.31277 1.57924 1.19474 0.90555 1.04321 1.22950 0.89483 1.25699 0.96669 1.01719 1.01948 1.70164 1.03319 1.39092 1.47563 0.85110 0.76664 0.78833 0.78472 1.20226 1.22200 1.20091 1.21591 0.92079 0.89310 0.93438 1.22895 0.93700 0.96159 0.83638 0.90738 1.86396 1.50524 1.73816 1.26888 1.21923 0.89670 0.92815 1.02388 0.89453 0.87418 0.88474 0.78219 0.82823 0.75380 0.91566 0.91916 0.92538 0.95406 0.94371 0.96178 0.96815 0.75755 0.80234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 11.03 127.77 1.41 1.69 16 2 N -0.44 -6.27 3.09 -547.89 -1.69 -7.96 16 3 C -0.01 -0.13 11.34 83.12 0.94 0.81 16 4 C -0.19 -3.77 10.56 23.62 0.25 -3.52 16 5 C -0.27 -6.86 6.29 -19.04 -0.12 -6.98 16 6 C 0.59 18.61 7.81 86.62 0.68 19.29 16 7 O -0.60 -23.11 16.91 -4.14 -0.07 -23.18 16 8 N -0.71 -20.88 5.40 -466.51 -2.52 -23.40 16 9 C 0.15 4.75 5.12 86.38 0.44 5.19 16 10 C -0.09 -3.15 2.83 -9.40 -0.03 -3.17 16 11 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 12 C 0.14 5.67 6.41 86.86 0.56 6.23 16 13 N -0.62 -32.19 3.39 -691.98 -2.35 -34.54 16 14 C -0.24 -13.66 10.28 84.04 0.86 -12.80 16 15 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 16 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 17 N -0.95 -57.45 10.31 21.66 0.22 -57.23 16 18 Si 0.98 45.65 29.55 68.60 2.03 47.68 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 C 0.16 8.04 5.15 86.73 0.45 8.49 16 23 C 0.10 3.69 3.80 31.78 0.12 3.81 16 24 H 0.07 2.62 8.04 -2.39 -0.02 2.60 16 25 O -0.57 -20.02 13.39 -148.98 -1.99 -22.02 16 26 C 0.07 1.43 11.12 83.92 0.93 2.36 16 27 H 0.09 0.25 8.14 -2.38 -0.02 0.23 16 28 H 0.11 0.06 8.13 -2.39 -0.02 0.04 16 29 H 0.10 0.25 8.13 -2.39 -0.02 0.23 16 30 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.15 2.70 7.70 -2.91 -0.02 2.68 16 32 H 0.41 10.46 7.46 -92.71 -0.69 9.77 16 33 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.06 2.07 8.10 -2.39 -0.02 2.05 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.03 1.12 8.00 -2.39 -0.02 1.10 16 37 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.02 1.13 7.30 -2.39 -0.02 1.12 16 39 H 0.01 0.75 7.50 -2.39 -0.02 0.74 16 40 H 0.39 10.70 9.12 -74.06 -0.68 10.03 16 41 H 0.18 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -78.39 344.88 0.27 -78.12 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -0.32 Total: 24.53 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 6.96 Total: 18.01 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -6.34 Total: -123.14 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -2.06 Total: -45.20 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -78.39 0.27 -78.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957975324.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.503 kcal (2) G-P(sol) polarization free energy of solvation -78.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds