Wall clock time and date at job start Tue Mar 31 2020 03:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36449 * 124.85211 * 2 1 4 4 C 1.34483 * 108.85699 * 179.77091 * 3 2 1 5 5 C 1.46687 * 106.33197 * 0.38295 * 4 3 2 6 6 C 1.47268 * 126.94192 * 179.88590 * 5 4 3 7 7 O 1.21624 * 120.00001 * 179.67877 * 6 5 4 8 8 N 1.34775 * 119.99657 * 359.68603 * 6 5 4 9 9 C 1.46500 * 119.99538 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.47149 * 179.97438 * 9 8 6 11 11 H 1.08999 * 110.77535 * 51.76040 * 10 9 8 12 12 C 1.54315 * 110.71722 * 288.52141 * 10 9 8 13 13 N 1.47023 * 107.27241 * 219.44307 * 12 10 9 14 14 C 1.36933 * 125.65507 * 178.99274 * 13 12 10 15 15 H 1.08004 * 119.99383 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00263 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00277 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99805 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47378 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47332 * 120.00014 * 18 16 14 21 21 H 1.48503 * 109.47041 * 239.99753 * 18 16 14 22 22 C 1.47426 * 108.69981 * 358.93706 * 13 12 10 23 23 C 1.54907 * 104.82942 * 24.13288 * 22 13 12 24 24 H 1.09005 * 111.04094 * 81.08152 * 23 22 13 25 25 O 1.42903 * 111.00431 * 204.90944 * 23 22 13 26 26 C 1.34661 * 124.85060 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46885 * 269.96930 * 1 2 3 28 28 H 1.08996 * 109.47692 * 29.97028 * 1 2 3 29 29 H 1.09001 * 109.47477 * 149.97485 * 1 2 3 30 30 H 1.08006 * 125.56747 * 359.97438 * 3 2 1 31 31 H 1.07996 * 126.83535 * 180.25417 * 4 3 2 32 32 H 0.96993 * 120.00285 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47659 * 59.99915 * 9 8 6 34 34 H 1.09007 * 109.46961 * 299.99408 * 9 8 6 35 35 H 1.09003 * 109.88697 * 338.85781 * 12 10 9 36 36 H 1.09000 * 109.88663 * 100.02422 * 12 10 9 37 37 H 0.96999 * 120.00355 * 179.97438 * 17 16 14 38 38 H 1.08994 * 110.37345 * 265.29076 * 22 13 12 39 39 H 1.09007 * 110.36591 * 142.96519 * 22 13 12 40 40 H 0.96700 * 114.00311 * 292.19952 * 25 23 22 41 41 H 1.08001 * 125.79803 * 359.95644 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7492 0.0051 5 6 3.5462 -0.7177 -0.0009 6 6 4.7284 -1.5958 -0.0009 7 8 4.5885 -2.8040 -0.0004 8 7 5.9653 -1.0606 -0.0012 9 6 7.1413 -1.9341 -0.0017 10 6 8.4110 -1.0802 -0.0026 11 1 8.3802 -0.3409 0.7977 12 6 8.6073 -0.3954 -1.3715 13 7 10.0443 -0.4386 -1.6791 14 6 10.6322 0.0479 -2.8161 15 1 10.0267 0.5116 -3.5810 16 6 12.0060 -0.0549 -2.9857 17 7 12.7438 -0.6195 -2.0535 18 14 12.8077 0.6082 -4.5373 19 1 11.7670 1.1900 -5.4225 20 1 13.7935 1.6581 -4.1752 21 1 13.5000 -0.4969 -5.2478 22 6 10.7479 -1.0913 -0.5600 23 6 9.6733 -1.9734 0.1234 24 1 9.5414 -2.9141 -0.4112 25 8 9.9998 -2.2083 1.4946 26 6 2.2345 -1.1051 -0.0005 27 1 -0.3633 -0.0006 1.0277 28 1 -0.3634 0.8902 -0.5133 29 1 -0.3634 -0.8897 -0.5142 30 1 1.8828 2.1373 -0.0004 31 1 4.3980 1.4017 0.0103 32 1 6.0768 -0.0971 -0.0018 33 1 7.1264 -2.5632 -0.8917 34 1 7.1269 -2.5634 0.8883 35 1 8.0479 -0.9318 -2.1380 36 1 8.2702 0.6399 -1.3199 37 1 13.7038 -0.6916 -2.1722 38 1 11.1255 -0.3443 0.1381 39 1 11.5642 -1.7094 -0.9339 40 1 10.7821 -2.7620 1.6234 41 1 1.8766 -2.1241 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957975325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:58 Heat of formation + Delta-G solvation = -6.683326 kcal Electronic energy + Delta-G solvation = -23044.913402 eV Core-core repulsion = 19540.615808 eV Total energy + Delta-G solvation = -3504.297593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.34816 -39.13881 -37.98979 -35.06702 -34.47828 -33.06410 -32.09827 -29.78058 -29.23695 -27.63862 -26.84756 -25.36844 -23.63884 -22.12250 -20.52483 -20.24712 -19.88184 -19.29429 -18.00354 -16.96773 -16.70514 -15.73810 -15.68945 -15.50426 -15.03446 -14.77524 -14.31391 -13.97905 -13.77394 -13.29538 -13.26929 -12.97712 -12.82373 -12.78661 -12.43823 -12.37035 -12.12929 -11.87645 -11.47833 -11.20968 -10.90615 -10.78227 -10.55823 -10.00713 -9.94388 -9.76769 -9.57518 -9.10118 -8.89304 -8.70223 -8.68543 -8.43474 -6.87595 -5.68885 -3.11082 1.74142 2.28527 2.58772 3.38716 3.44234 3.46816 3.57971 3.71246 4.38114 4.44395 4.70311 4.72727 4.77710 4.80851 4.98125 5.07960 5.26440 5.32910 5.33450 5.47916 5.59827 5.73589 5.75240 5.92424 6.02851 6.11110 6.18565 6.30434 6.46766 6.57887 6.60642 6.73999 6.85244 6.89991 7.01344 7.39565 7.57968 7.77345 7.83344 8.20604 8.32491 8.54117 9.17685 9.78563 10.42188 11.35268 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021342 B = 0.003155 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.639034 B = 8872.803849 C = 9790.846402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.020 4.020 4 C -0.167 4.167 5 C -0.230 4.230 6 C 0.589 3.411 7 O -0.560 6.560 8 N -0.720 5.720 9 C 0.135 3.865 10 C -0.104 4.104 11 H 0.085 0.915 12 C 0.141 3.859 13 N -0.602 5.602 14 C -0.222 4.222 15 H 0.080 0.920 16 C -0.012 4.012 17 N -0.923 5.923 18 Si 0.916 3.084 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.129 3.871 23 C 0.081 3.919 24 H 0.061 0.939 25 O -0.569 6.569 26 C 0.071 3.929 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.166 0.834 31 H 0.147 0.853 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.025 0.975 37 H 0.252 0.748 38 H 0.022 0.978 39 H 0.109 0.891 40 H 0.376 0.624 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.451 1.624 6.003 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.146 4.146 4 C -0.191 4.191 5 C -0.240 4.240 6 C 0.377 3.623 7 O -0.440 6.440 8 N -0.370 5.370 9 C 0.011 3.989 10 C -0.123 4.123 11 H 0.104 0.896 12 C 0.015 3.985 13 N -0.329 5.329 14 C -0.350 4.350 15 H 0.098 0.902 16 C -0.207 4.207 17 N -0.572 5.572 18 Si 0.747 3.253 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.003 3.997 23 C 0.020 3.980 24 H 0.079 0.921 25 O -0.374 6.374 26 C -0.064 4.064 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.183 0.817 31 H 0.165 0.835 32 H 0.235 0.765 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.126 0.874 40 H 0.223 0.777 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -22.224 1.196 5.989 23.048 hybrid contribution 0.969 0.655 -0.864 1.454 sum -21.255 1.851 5.125 21.943 Atomic orbital electron populations 1.22102 0.77002 1.04627 1.03473 1.43612 1.06707 1.05971 1.56313 1.21738 0.90591 0.91233 1.11068 1.22104 0.96293 0.93305 1.07400 1.20412 0.92631 0.93390 1.17560 1.17360 0.82403 0.86960 0.75563 1.90751 1.86723 1.14780 1.51731 1.45807 1.05398 1.10586 1.75171 1.21394 0.82732 0.92550 1.02174 1.22395 0.92756 0.97919 0.99266 0.89622 1.21382 0.87827 0.96973 0.92280 1.44341 1.00463 1.69302 1.18802 1.19146 0.90558 1.31055 0.94219 0.90226 1.24803 0.96071 1.01322 0.98546 1.69776 1.04938 1.49293 1.33203 0.85970 0.79211 0.78068 0.82084 1.20470 1.21732 1.21708 1.22534 0.93919 0.94790 0.88443 1.23316 0.95596 0.97425 0.81644 0.92137 1.86373 1.50689 1.74557 1.25748 1.21771 0.89846 0.91692 1.03123 0.90713 0.89633 0.89634 0.81651 0.83528 0.76514 0.91378 0.91314 0.95238 0.95727 0.93714 0.96033 0.87373 0.77710 0.80891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.28 11.03 59.85 0.66 0.94 16 2 N -0.45 -3.80 3.09 -124.53 -0.38 -4.18 16 3 C -0.02 -0.18 11.34 -16.82 -0.19 -0.37 16 4 C -0.17 -1.80 10.56 -37.50 -0.40 -2.20 16 5 C -0.23 -3.04 6.29 -103.35 -0.65 -3.69 16 6 C 0.59 9.47 7.81 -12.59 -0.10 9.38 16 7 O -0.56 -10.81 16.91 5.26 0.09 -10.72 16 8 N -0.72 -10.81 5.47 -61.43 -0.34 -11.15 16 9 C 0.14 2.25 5.02 -4.04 -0.02 2.23 16 10 C -0.10 -1.89 2.70 -88.79 -0.24 -2.13 16 11 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 12 C 0.14 2.94 6.75 -3.07 -0.02 2.92 16 13 N -0.60 -15.40 3.39 -170.08 -0.58 -15.98 16 14 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16 15 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 16 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 17 N -0.92 -26.71 10.09 55.49 0.56 -26.16 16 18 Si 0.92 22.00 29.55 -169.99 -5.02 16.97 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 C 0.13 3.12 5.62 -2.53 -0.01 3.10 16 23 C 0.08 1.58 3.88 -24.59 -0.10 1.48 16 24 H 0.06 1.16 8.05 -51.93 -0.42 0.75 16 25 O -0.57 -10.13 13.47 -35.23 -0.47 -10.60 16 26 C 0.07 0.78 11.12 -16.84 -0.19 0.59 16 27 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.08 0.21 8.13 -51.93 -0.42 -0.21 16 29 H 0.08 0.25 8.13 -51.93 -0.42 -0.17 16 30 H 0.17 0.93 8.06 -52.48 -0.42 0.50 16 31 H 0.15 1.36 7.69 -52.49 -0.40 0.95 16 32 H 0.40 5.23 7.59 -40.82 -0.31 4.92 16 33 H 0.07 1.21 7.93 -51.93 -0.41 0.79 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.03 0.62 7.68 -51.93 -0.40 0.22 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.11 2.90 5.88 -51.92 -0.31 2.59 16 40 H 0.38 5.22 9.12 45.56 0.42 5.64 16 41 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -35.21 344.34 -7.64 -42.85 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.18 Total: 8.27 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -1.50 Total: 5.51 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.74 Total: -57.47 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.39 Total: -21.32 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.21 -7.64 -42.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957975325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.167 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds