Wall clock time and date at job start Tue Mar 31 2020 03:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36449 * 124.85211 * 2 1 4 4 C 1.34483 * 108.85699 * 179.77091 * 3 2 1 5 5 C 1.46687 * 106.33197 * 0.38295 * 4 3 2 6 6 C 1.47268 * 126.94192 * 179.88590 * 5 4 3 7 7 O 1.21624 * 120.00001 * 179.67877 * 6 5 4 8 8 N 1.34775 * 119.99657 * 359.68603 * 6 5 4 9 9 C 1.46500 * 119.99538 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.47149 * 179.97438 * 9 8 6 11 11 H 1.08999 * 110.77535 * 51.76040 * 10 9 8 12 12 C 1.54315 * 110.71722 * 288.52141 * 10 9 8 13 13 N 1.47023 * 107.27241 * 219.44307 * 12 10 9 14 14 C 1.36933 * 125.65507 * 178.99274 * 13 12 10 15 15 H 1.08004 * 119.99383 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00263 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00277 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99805 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47378 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47332 * 120.00014 * 18 16 14 21 21 H 1.48503 * 109.47041 * 239.99753 * 18 16 14 22 22 C 1.47426 * 108.69981 * 358.93706 * 13 12 10 23 23 C 1.54907 * 104.82942 * 24.13288 * 22 13 12 24 24 H 1.09005 * 111.04094 * 81.08152 * 23 22 13 25 25 O 1.42903 * 111.00431 * 204.90944 * 23 22 13 26 26 C 1.34661 * 124.85060 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46885 * 269.96930 * 1 2 3 28 28 H 1.08996 * 109.47692 * 29.97028 * 1 2 3 29 29 H 1.09001 * 109.47477 * 149.97485 * 1 2 3 30 30 H 1.08006 * 125.56747 * 359.97438 * 3 2 1 31 31 H 1.07996 * 126.83535 * 180.25417 * 4 3 2 32 32 H 0.96993 * 120.00285 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47659 * 59.99915 * 9 8 6 34 34 H 1.09007 * 109.46961 * 299.99408 * 9 8 6 35 35 H 1.09003 * 109.88697 * 338.85781 * 12 10 9 36 36 H 1.09000 * 109.88663 * 100.02422 * 12 10 9 37 37 H 0.96999 * 120.00355 * 179.97438 * 17 16 14 38 38 H 1.08994 * 110.37345 * 265.29076 * 22 13 12 39 39 H 1.09007 * 110.36591 * 142.96519 * 22 13 12 40 40 H 0.96700 * 114.00311 * 292.19952 * 25 23 22 41 41 H 1.08001 * 125.79803 * 359.95644 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7492 0.0051 5 6 3.5462 -0.7177 -0.0009 6 6 4.7284 -1.5958 -0.0009 7 8 4.5885 -2.8040 -0.0004 8 7 5.9653 -1.0606 -0.0012 9 6 7.1413 -1.9341 -0.0017 10 6 8.4110 -1.0802 -0.0026 11 1 8.3802 -0.3409 0.7977 12 6 8.6073 -0.3954 -1.3715 13 7 10.0443 -0.4386 -1.6791 14 6 10.6322 0.0479 -2.8161 15 1 10.0267 0.5116 -3.5810 16 6 12.0060 -0.0549 -2.9857 17 7 12.7438 -0.6195 -2.0535 18 14 12.8077 0.6082 -4.5373 19 1 11.7670 1.1900 -5.4225 20 1 13.7935 1.6581 -4.1752 21 1 13.5000 -0.4969 -5.2478 22 6 10.7479 -1.0913 -0.5600 23 6 9.6733 -1.9734 0.1234 24 1 9.5414 -2.9141 -0.4112 25 8 9.9998 -2.2083 1.4946 26 6 2.2345 -1.1051 -0.0005 27 1 -0.3633 -0.0006 1.0277 28 1 -0.3634 0.8902 -0.5133 29 1 -0.3634 -0.8897 -0.5142 30 1 1.8828 2.1373 -0.0004 31 1 4.3980 1.4017 0.0103 32 1 6.0768 -0.0971 -0.0018 33 1 7.1264 -2.5632 -0.8917 34 1 7.1269 -2.5634 0.8883 35 1 8.0479 -0.9318 -2.1380 36 1 8.2702 0.6399 -1.3199 37 1 13.7038 -0.6916 -2.1722 38 1 11.1255 -0.3443 0.1381 39 1 11.5642 -1.7094 -0.9339 40 1 10.7821 -2.7620 1.6234 41 1 1.8766 -2.1241 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957975325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:56 Heat of formation + Delta-G solvation = -33.221780 kcal Electronic energy + Delta-G solvation = -23046.064195 eV Core-core repulsion = 19540.615808 eV Total energy + Delta-G solvation = -3505.448387 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.10200 -40.48417 -39.53293 -36.64601 -36.01952 -34.11931 -33.54668 -31.41739 -30.09380 -29.31450 -27.79921 -26.92628 -25.17143 -23.26581 -22.23090 -21.42084 -21.00673 -20.44259 -19.04534 -18.77220 -18.24053 -17.09439 -16.90250 -16.47896 -16.43535 -16.02812 -15.63286 -15.44489 -15.00172 -14.74606 -14.39011 -14.29478 -14.01488 -13.89420 -13.63435 -13.28967 -13.25129 -13.10879 -12.99802 -12.94350 -12.77343 -12.36806 -12.27687 -11.90246 -11.83061 -11.40307 -11.02209 -10.78265 -10.73402 -10.11739 -9.48634 -9.26248 -8.92412 -7.79550 -5.24902 0.79128 1.47951 1.48627 1.55207 1.59192 1.93640 2.43218 2.48874 2.61338 3.21701 3.31319 3.62485 3.74431 3.91989 4.01120 4.03788 4.10945 4.11590 4.34339 4.43761 4.47632 4.49834 4.61355 4.63178 4.77284 4.77537 4.90284 4.97510 5.04437 5.16646 5.27311 5.42808 5.46976 5.49537 5.73801 5.79071 6.09278 6.24769 6.37936 6.67811 6.89483 7.07855 7.34160 7.73711 8.36843 9.22744 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021342 B = 0.003155 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.639034 B = 8872.803849 C = 9790.846402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.443 5.443 3 C -0.008 4.008 4 C -0.187 4.187 5 C -0.268 4.268 6 C 0.585 3.415 7 O -0.601 6.601 8 N -0.713 5.713 9 C 0.149 3.851 10 C -0.086 4.086 11 H 0.092 0.908 12 C 0.141 3.859 13 N -0.624 5.624 14 C -0.238 4.238 15 H 0.084 0.916 16 C -0.067 4.067 17 N -0.950 5.950 18 Si 0.982 3.018 19 H -0.266 1.266 20 H -0.292 1.292 21 H -0.291 1.291 22 C 0.135 3.865 23 C 0.096 3.904 24 H 0.067 0.933 25 O -0.568 6.568 26 C 0.069 3.931 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.202 0.798 31 H 0.155 0.845 32 H 0.411 0.589 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.036 0.964 37 H 0.248 0.752 38 H -0.007 1.007 39 H 0.080 0.920 40 H 0.394 0.606 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.834 2.877 5.892 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.135 4.135 4 C -0.211 4.211 5 C -0.278 4.278 6 C 0.376 3.624 7 O -0.485 6.485 8 N -0.364 5.364 9 C 0.024 3.976 10 C -0.106 4.106 11 H 0.110 0.890 12 C 0.016 3.984 13 N -0.351 5.351 14 C -0.367 4.367 15 H 0.102 0.898 16 C -0.260 4.260 17 N -0.599 5.599 18 Si 0.811 3.189 19 H -0.190 1.190 20 H -0.219 1.219 21 H -0.218 1.218 22 C 0.009 3.991 23 C 0.035 3.965 24 H 0.085 0.915 25 O -0.375 6.375 26 C -0.068 4.068 27 H 0.107 0.893 28 H 0.126 0.874 29 H 0.114 0.886 30 H 0.219 0.781 31 H 0.173 0.827 32 H 0.247 0.753 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.011 0.989 39 H 0.098 0.902 40 H 0.244 0.756 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -24.645 2.479 5.891 25.461 hybrid contribution 1.621 0.294 -0.793 1.829 sum -23.024 2.773 5.098 23.744 Atomic orbital electron populations 1.22454 0.74159 1.06334 1.04936 1.43939 1.08407 1.05096 1.54336 1.22291 0.89943 0.92635 1.08662 1.22304 0.97887 0.92181 1.08688 1.20363 0.92309 0.94427 1.20704 1.17841 0.83223 0.86841 0.74520 1.90713 1.87296 1.16587 1.53887 1.45697 1.04814 1.10918 1.74941 1.21109 0.82645 0.92243 1.01563 1.22218 0.92797 0.97649 0.97904 0.88963 1.21503 0.85380 0.97883 0.93635 1.44626 1.02494 1.69400 1.18589 1.19514 0.91100 1.30942 0.95139 0.89804 1.25655 0.96700 1.02028 1.01588 1.70012 1.04764 1.50325 1.34841 0.84948 0.78172 0.77137 0.78691 1.19022 1.21913 1.21794 1.22311 0.94732 0.94171 0.87910 1.22995 0.94404 0.96898 0.82175 0.91522 1.86346 1.51844 1.75086 1.24264 1.21918 0.89695 0.92818 1.02418 0.89323 0.87428 0.88582 0.78135 0.82697 0.75313 0.92440 0.91519 0.95149 0.94586 0.94209 0.98881 0.90241 0.75648 0.80317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 11.03 127.77 1.41 1.69 16 2 N -0.44 -6.27 3.09 -547.90 -1.69 -7.96 16 3 C -0.01 -0.12 11.34 83.12 0.94 0.82 16 4 C -0.19 -3.72 10.56 23.62 0.25 -3.47 16 5 C -0.27 -6.91 6.29 -19.04 -0.12 -7.03 16 6 C 0.58 18.89 7.81 86.62 0.68 19.56 16 7 O -0.60 -23.64 16.91 -4.11 -0.07 -23.71 16 8 N -0.71 -21.14 5.47 -466.50 -2.55 -23.69 16 9 C 0.15 4.89 5.02 86.38 0.43 5.32 16 10 C -0.09 -3.08 2.70 -9.61 -0.03 -3.10 16 11 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 12 C 0.14 5.80 6.75 86.73 0.59 6.39 16 13 N -0.62 -32.28 3.39 -692.00 -2.35 -34.63 16 14 C -0.24 -13.34 10.27 84.03 0.86 -12.48 16 15 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 16 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 17 N -0.95 -56.25 10.09 21.65 0.22 -56.04 16 18 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 22 C 0.13 6.67 5.62 86.85 0.49 7.16 16 23 C 0.10 3.74 3.88 31.98 0.12 3.86 16 24 H 0.07 2.54 8.05 -2.38 -0.02 2.52 16 25 O -0.57 -19.71 13.47 -148.98 -2.01 -21.71 16 26 C 0.07 1.43 11.12 83.91 0.93 2.37 16 27 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.11 0.07 8.13 -2.39 -0.02 0.05 16 29 H 0.10 0.27 8.13 -2.39 -0.02 0.26 16 30 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 31 H 0.16 2.63 7.69 -2.91 -0.02 2.61 16 32 H 0.41 10.38 7.59 -92.71 -0.70 9.68 16 33 H 0.06 2.03 7.93 -2.39 -0.02 2.01 16 34 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.03 1.26 7.68 -2.39 -0.02 1.24 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 38 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 39 H 0.08 4.41 5.88 -2.38 -0.01 4.40 16 40 H 0.39 10.57 9.12 -74.06 -0.68 9.89 16 41 H 0.18 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -77.32 344.34 0.28 -77.04 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.33 Total: 25.42 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 7.03 Total: 17.74 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -6.37 Total: -122.31 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -2.08 Total: -45.42 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -77.32 0.28 -77.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957975325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.821 kcal (2) G-P(sol) polarization free energy of solvation -77.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds