Wall clock time and date at job start Tue Mar 31 2020 03:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21281 * 119.99807 * 2 1 4 4 N 1.34777 * 119.99861 * 179.97438 * 2 1 3 5 5 C 1.47584 * 134.49209 * 179.97438 * 4 2 1 6 6 C 1.53950 * 86.11555 * 155.36661 * 5 4 2 7 7 C 1.50700 * 113.74138 * 137.95404 * 6 5 4 8 8 O 1.21288 * 119.99993 * 1.92543 * 7 6 5 9 9 N 1.34770 * 120.00255 * 181.92310 * 7 6 5 10 10 C 1.46501 * 120.00266 * 179.97438 * 9 7 6 11 11 H 1.09000 * 115.51386 * 350.42349 * 10 9 7 12 12 C 1.52999 * 117.44325 * 205.00161 * 10 9 7 13 13 H 1.08997 * 119.54141 * 5.76474 * 12 10 9 14 14 C 1.54391 * 118.12065 * 160.85695 * 12 10 9 15 15 N 1.48146 * 104.61947 * 87.19330 * 14 12 10 16 16 C 1.36938 * 127.84066 * 140.15552 * 15 14 12 17 17 H 1.07995 * 119.99318 * 344.36447 * 16 15 14 18 18 C 1.38811 * 119.99898 * 164.36181 * 16 15 14 19 19 N 1.31619 * 120.00095 * 350.59074 * 18 16 15 20 20 Si 1.86796 * 119.99715 * 170.58940 * 18 16 15 21 21 H 1.48494 * 109.47408 * 90.00369 * 20 18 16 22 22 H 1.48500 * 109.46988 * 210.00377 * 20 18 16 23 23 H 1.48502 * 109.47368 * 329.99978 * 20 18 16 24 24 C 1.48146 * 104.32090 * 320.41206 * 15 14 12 25 25 C 1.52997 * 117.40369 * 135.77428 * 10 9 7 26 26 H 1.09000 * 119.54489 * 355.90049 * 25 10 9 27 27 C 1.47813 * 134.45896 * 359.87980 * 4 2 1 28 28 H 1.09002 * 109.47165 * 240.00189 * 1 2 3 29 29 H 1.09000 * 109.47045 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47065 * 120.00568 * 1 2 3 31 31 H 1.09002 * 113.76738 * 41.06831 * 5 4 2 32 32 H 1.09002 * 113.77123 * 269.66659 * 5 4 2 33 33 H 1.09001 * 113.74030 * 269.15626 * 6 5 4 34 34 H 0.96998 * 120.00053 * 0.02562 * 9 7 6 35 35 H 1.09001 * 110.40604 * 328.40326 * 14 12 10 36 36 H 1.09006 * 110.50679 * 206.02477 * 14 12 10 37 37 H 0.96999 * 119.99846 * 179.97438 * 19 18 16 38 38 H 1.09005 * 110.40864 * 158.37289 * 24 15 14 39 39 H 1.09005 * 110.40676 * 280.80148 * 24 15 14 40 40 H 1.08998 * 113.77675 * 90.36518 * 27 4 2 41 41 H 1.09006 * 113.83076 * 318.90867 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6098 -1.5366 0.0002 6 6 3.1596 -2.8618 0.6415 7 6 3.8592 -4.0743 0.0835 8 8 4.7157 -3.9432 -0.7653 9 7 3.5333 -5.3043 0.5275 10 6 4.2131 -6.4831 -0.0153 11 1 4.8477 -6.3012 -0.8827 12 6 3.4672 -7.8175 0.0454 13 1 2.4349 -7.8408 0.3945 14 6 3.9319 -8.9542 -0.8904 15 7 5.0002 -9.6480 -0.1339 16 6 5.2356 -10.9947 -0.0564 17 1 4.4745 -11.6947 -0.3680 18 6 6.4525 -11.4601 0.4225 19 7 7.4443 -10.6193 0.6270 20 14 6.6825 -13.2797 0.7768 21 1 7.1841 -13.9620 -0.4430 22 1 7.6643 -13.4493 1.8780 23 1 5.3820 -13.8743 1.1773 24 6 5.7520 -8.5546 0.5248 25 6 4.6673 -7.5540 0.9785 26 1 4.5378 -7.3848 2.0475 27 6 1.7848 -2.5913 0.0034 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 4.2236 -0.9179 0.6549 32 1 4.0333 -1.6528 -0.9974 33 1 3.1497 -2.8409 1.7312 34 1 2.8482 -5.4092 1.2061 35 1 4.3288 -8.5437 -1.8189 36 1 3.1088 -9.6376 -1.0991 37 1 8.2945 -10.9445 0.9620 38 1 6.3013 -8.9359 1.3857 39 1 6.4332 -8.0818 -0.1827 40 1 1.6714 -3.0179 -0.9932 41 1 0.9440 -2.8133 0.6606 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958672750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:48 Heat of formation + Delta-G solvation = 2.701833 kcal Electronic energy + Delta-G solvation = -22747.506629 eV Core-core repulsion = 19243.616007 eV Total energy + Delta-G solvation = -3503.890622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.85009 -40.70349 -39.75939 -38.31582 -36.06602 -34.33627 -32.40428 -31.87965 -29.60076 -28.90338 -27.61142 -27.15146 -25.02950 -23.14583 -21.91458 -21.14650 -20.84023 -20.00219 -18.86573 -18.58693 -17.99155 -17.61701 -16.84723 -16.70598 -16.46568 -15.97748 -15.60556 -15.28740 -14.90958 -14.63028 -14.30732 -14.03852 -13.74109 -13.66429 -13.43690 -13.32564 -13.24094 -13.10868 -12.93300 -12.84509 -12.70842 -12.14222 -12.04249 -12.03970 -11.86378 -11.62784 -11.21140 -10.87064 -10.78290 -10.65615 -9.84771 -9.68197 -8.91226 -7.91553 -5.28221 1.45488 1.47620 1.49073 1.54590 1.58695 1.66010 2.07538 2.49423 2.87013 3.16994 3.29324 3.48263 3.60215 3.75434 3.86799 3.95148 3.98123 4.14563 4.18304 4.34544 4.42963 4.47780 4.51435 4.55543 4.60189 4.66914 4.76462 4.86191 4.93850 5.02573 5.02722 5.11928 5.31650 5.44162 5.46609 5.57615 5.65596 6.17440 6.53249 6.63104 7.00549 7.06019 7.23583 7.68413 8.46441 9.22540 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.054895 B = 0.002446 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.942927 B =11442.663782 C =11703.477522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.524 3.476 3 O -0.606 6.606 4 N -0.649 5.649 5 C 0.113 3.887 6 C -0.130 4.130 7 C 0.527 3.473 8 O -0.581 6.581 9 N -0.674 5.674 10 C 0.116 3.884 11 H 0.102 0.898 12 C -0.155 4.155 13 H 0.147 0.853 14 C 0.145 3.855 15 N -0.618 5.618 16 C -0.239 4.239 17 H 0.085 0.915 18 C -0.066 4.066 19 N -0.950 5.950 20 Si 0.981 3.019 21 H -0.286 1.286 22 H -0.294 1.294 23 H -0.265 1.265 24 C 0.187 3.813 25 C -0.186 4.186 26 H 0.124 0.876 27 C 0.130 3.870 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.160 0.840 34 H 0.423 0.577 35 H 0.017 0.983 36 H 0.067 0.933 37 H 0.249 0.751 38 H 0.054 0.946 39 H -0.009 1.009 40 H 0.096 0.904 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.963 15.495 3.195 24.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.317 3.683 3 O -0.488 6.488 4 N -0.384 5.384 5 C -0.010 4.010 6 C -0.152 4.152 7 C 0.314 3.686 8 O -0.460 6.460 9 N -0.324 5.324 10 C 0.009 3.991 11 H 0.120 0.880 12 C -0.175 4.175 13 H 0.165 0.835 14 C 0.019 3.981 15 N -0.342 5.342 16 C -0.368 4.368 17 H 0.102 0.898 18 C -0.259 4.259 19 N -0.598 5.598 20 Si 0.809 3.191 21 H -0.213 1.213 22 H -0.221 1.221 23 H -0.189 1.189 24 C 0.061 3.939 25 C -0.207 4.207 26 H 0.142 0.858 27 C 0.008 3.992 28 H 0.135 0.865 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.177 0.823 34 H 0.261 0.739 35 H 0.035 0.965 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.009 0.991 40 H 0.115 0.885 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.030 16.141 2.645 24.344 hybrid contribution 0.937 -1.000 0.189 1.383 sum -17.093 15.141 2.834 23.010 Atomic orbital electron populations 1.21892 0.87163 1.06081 1.06568 1.21456 0.92116 0.80924 0.73838 1.90715 1.72410 1.32606 1.53083 1.50192 1.08779 1.06505 1.72932 1.23038 0.84305 0.92225 1.01439 1.23333 0.97426 0.90170 1.04284 1.20778 0.82089 0.84616 0.81125 1.90754 1.34403 1.86626 1.34255 1.45124 1.40751 1.03747 1.42768 1.21361 0.98484 0.81275 0.97981 0.88031 1.24191 0.97724 0.93967 1.01642 0.83521 1.21315 0.91547 0.92617 0.92590 1.45490 1.33307 1.01784 1.53618 1.19401 0.98025 0.81576 1.37768 0.89751 1.25788 0.94997 1.02350 1.02771 1.70113 1.03025 1.34998 1.51619 0.85049 0.77698 0.79262 0.77096 1.21318 1.22075 1.18937 1.20761 0.91256 0.86291 0.95549 1.24384 0.98454 1.00265 0.97628 0.85780 1.23421 0.96325 0.76856 1.02570 0.86459 0.89264 0.87355 0.89916 0.90092 0.82252 0.73897 0.96494 0.91474 0.94177 0.92726 0.99063 0.88546 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 10.07 71.24 0.72 -0.48 16 2 C 0.52 9.70 8.17 87.66 0.72 10.41 16 3 O -0.61 -18.12 17.81 -3.03 -0.05 -18.17 16 4 N -0.65 -9.71 3.61 -836.05 -3.02 -12.73 16 5 C 0.11 2.05 8.17 86.49 0.71 2.75 16 6 C -0.13 -1.50 4.33 -10.87 -0.05 -1.55 16 7 C 0.53 10.80 7.36 87.66 0.65 11.44 16 8 O -0.58 -18.54 15.48 -3.06 -0.05 -18.59 16 9 N -0.67 -12.40 5.56 -442.54 -2.46 -14.86 16 10 C 0.12 3.35 5.98 44.99 0.27 3.62 16 11 H 0.10 3.66 7.40 -2.39 -0.02 3.65 16 12 C -0.15 -4.54 7.06 -9.89 -0.07 -4.61 16 13 H 0.15 3.16 8.14 -2.39 -0.02 3.14 16 14 C 0.14 5.67 7.04 86.54 0.61 6.28 16 15 N -0.62 -31.25 3.38 -688.12 -2.32 -33.57 16 16 C -0.24 -13.15 10.35 84.03 0.87 -12.28 16 17 H 0.08 4.38 7.85 -2.91 -0.02 4.36 16 18 C -0.07 -3.69 5.39 84.86 0.46 -3.24 16 19 N -0.95 -57.28 10.89 21.65 0.24 -57.04 16 20 Si 0.98 44.87 29.56 68.60 2.03 46.90 16 21 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 24 C 0.19 9.14 5.70 86.54 0.49 9.63 16 25 C -0.19 -6.40 7.06 -9.89 -0.07 -6.47 16 26 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 27 C 0.13 0.89 8.18 86.45 0.71 1.60 16 28 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.09 0.78 8.12 -2.39 -0.02 0.76 16 30 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.82 7.43 -2.39 -0.02 1.80 16 33 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.42 4.17 8.83 -92.71 -0.82 3.35 16 35 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 37 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 38 H 0.05 3.02 6.54 -2.38 -0.02 3.00 16 39 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 40 H 0.10 0.71 8.09 -2.39 -0.02 0.69 16 41 H 0.14 -0.21 8.14 -2.38 -0.02 -0.23 16 Total: -1.00 -83.54 346.46 0.59 -82.95 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.22 Total: 8.00 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 6.00 Total: 17.12 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -7.57 Total: -118.21 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.10 Total: -36.76 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -83.54 0.59 -82.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958672750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.657 kcal (2) G-P(sol) polarization free energy of solvation -83.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds