Wall clock time and date at job start Tue Mar 31 2020 03:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46767 * 124.35159 * 2 1 4 4 C 1.54481 * 105.47573 * 197.04331 * 3 2 1 5 5 H 1.08996 * 111.00344 * 216.45598 * 4 3 2 6 6 C 1.50695 * 110.96904 * 92.70448 * 4 3 2 7 7 O 1.21286 * 120.00161 * 6.17062 * 6 4 3 8 8 N 1.34773 * 120.00046 * 186.16402 * 6 4 3 9 9 C 1.46499 * 119.99942 * 180.02562 * 8 6 4 10 10 H 1.09001 * 115.49715 * 350.38829 * 9 8 6 11 11 C 1.53003 * 117.44409 * 205.00138 * 9 8 6 12 12 H 1.08995 * 119.53988 * 5.72132 * 11 9 8 13 13 C 1.54389 * 118.12264 * 160.81259 * 11 9 8 14 14 N 1.48141 * 104.61972 * 89.21099 * 13 11 9 15 15 C 1.36937 * 127.83847 * 140.41544 * 14 13 11 16 16 H 1.07999 * 120.00246 * 338.92854 * 15 14 13 17 17 C 1.38815 * 119.99944 * 158.93083 * 15 14 13 18 18 N 1.31622 * 120.00119 * 335.61650 * 17 15 14 19 19 Si 1.86801 * 119.99974 * 155.61203 * 17 15 14 20 20 H 1.48501 * 109.46843 * 90.00213 * 19 17 15 21 21 H 1.48498 * 109.47072 * 330.00315 * 19 17 15 22 22 H 1.48498 * 109.47087 * 209.99922 * 19 17 15 23 23 C 1.48145 * 104.32122 * 320.67503 * 14 13 11 24 24 C 1.53987 * 104.81847 * 39.27719 * 23 14 13 25 25 H 1.08998 * 118.03460 * 115.98808 * 24 23 14 26 26 C 1.54630 * 101.76329 * 334.59023 * 4 3 2 27 27 C 1.34421 * 124.34870 * 180.02562 * 2 1 3 28 28 O 1.21282 * 124.94007 * 359.53157 * 27 2 1 29 29 H 1.08997 * 109.47202 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46682 * 299.99299 * 1 2 3 31 31 H 1.09004 * 109.47318 * 59.98692 * 1 2 3 32 32 H 1.09001 * 110.23899 * 78.04762 * 3 2 1 33 33 H 1.08997 * 110.24811 * 316.04729 * 3 2 1 34 34 H 0.97003 * 120.00208 * 0.02562 * 8 6 4 35 35 H 1.09000 * 110.40621 * 330.42534 * 13 11 9 36 36 H 1.09000 * 110.50656 * 208.05012 * 13 11 9 37 37 H 0.97006 * 119.99914 * 354.46921 * 18 17 15 38 38 H 1.09003 * 110.40893 * 158.10934 * 23 14 13 39 39 H 1.09003 * 110.41009 * 280.54046 * 23 14 13 40 40 H 1.08999 * 110.48807 * 143.47504 * 26 4 3 41 41 H 1.09000 * 110.48430 * 266.11704 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7488 -0.4364 5 1 4.4759 1.3008 0.0954 6 6 3.8743 0.8821 -1.9274 7 8 3.0099 1.4113 -2.5936 8 7 4.9900 0.4133 -2.5205 9 6 5.1589 0.5434 -3.9700 10 1 4.2775 0.8786 -4.5168 11 6 6.0807 -0.4604 -4.6654 12 1 6.5037 -1.2868 -4.0942 13 6 5.9361 -0.6452 -6.1914 14 7 6.8520 0.3604 -6.7782 15 6 7.6679 0.2183 -7.8688 16 1 7.9580 -0.7674 -8.2014 17 6 8.1222 1.3412 -8.5467 18 7 7.4419 2.4664 -8.4865 19 14 9.6992 1.2555 -9.5444 20 1 9.3823 0.8489 -10.9371 21 1 10.6171 0.2600 -8.9348 22 1 10.3516 2.5894 -9.5545 23 6 6.6898 1.5525 -5.9137 24 6 6.5745 0.9900 -4.4849 25 1 7.3553 1.2463 -3.7689 26 6 3.6897 -0.7379 -0.0113 27 6 2.2234 -1.1098 -0.0005 28 8 1.7945 -2.2442 0.0071 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 2.3310 1.6425 1.0005 33 1 1.8982 1.9385 -0.7098 34 1 5.6813 -0.0102 -1.9878 35 1 4.9095 -0.4514 -6.5021 36 1 6.2376 -1.6509 -6.4845 37 1 6.5832 2.4904 -8.0359 38 1 7.5607 2.2029 -5.9959 39 1 5.7827 2.0948 -6.1804 40 1 4.2323 -1.3458 -0.7353 41 1 4.1198 -0.8534 0.9836 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960170088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:54 Heat of formation + Delta-G solvation = -3.620875 kcal Electronic energy + Delta-G solvation = -23318.989790 eV Core-core repulsion = 19814.824995 eV Total energy + Delta-G solvation = -3504.164795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.18052 -39.55020 -38.41097 -36.47163 -34.76445 -33.51373 -32.57601 -30.12335 -28.09251 -27.48061 -27.18749 -25.47460 -23.80621 -21.74926 -20.64467 -20.13693 -19.84289 -19.43384 -17.89649 -17.48782 -17.08753 -16.46784 -16.01004 -15.74355 -15.00341 -14.51451 -14.09127 -13.95754 -13.86304 -13.79071 -13.61789 -13.19452 -12.98200 -12.71237 -12.49823 -12.40348 -12.25355 -11.91874 -11.89016 -11.57364 -10.86997 -10.71030 -10.60797 -10.31760 -10.16388 -10.07872 -10.02690 -9.69127 -9.32861 -9.04844 -8.61509 -8.43584 -7.02992 -6.16791 -3.22656 2.26058 2.33934 2.68162 2.85230 3.47676 3.51777 3.67074 3.82965 3.89089 4.07099 4.25723 4.45769 4.53563 4.84373 4.89106 4.94137 4.96651 5.15772 5.17504 5.18826 5.24666 5.31533 5.36784 5.39410 5.45509 5.66480 5.73409 5.89188 6.01077 6.13576 6.33691 6.54844 6.57513 6.70494 6.75583 6.92746 6.95190 7.34237 7.70631 7.84118 8.03137 8.41224 8.93551 9.74514 10.36823 11.19334 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.039213 B = 0.002864 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.877664 B = 9772.934757 C = 9950.345148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.619 5.619 3 C 0.115 3.885 4 C -0.126 4.126 5 H 0.129 0.871 6 C 0.522 3.478 7 O -0.529 6.529 8 N -0.693 5.693 9 C 0.094 3.906 10 H 0.134 0.866 11 C -0.174 4.174 12 H 0.104 0.896 13 C 0.154 3.846 14 N -0.596 5.596 15 C -0.332 4.332 16 H 0.065 0.935 17 C -0.025 4.025 18 N -0.917 5.917 19 Si 1.072 2.928 20 H -0.293 1.293 21 H -0.292 1.292 22 H -0.285 1.285 23 C 0.165 3.835 24 C -0.176 4.176 25 H 0.107 0.893 26 C -0.147 4.147 27 C 0.516 3.484 28 O -0.532 6.532 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.400 0.600 35 H 0.026 0.974 36 H 0.054 0.946 37 H 0.269 0.731 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.108 0.892 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.630 -2.181 21.360 22.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.353 5.353 3 C -0.008 4.008 4 C -0.148 4.148 5 H 0.147 0.853 6 C 0.307 3.693 7 O -0.404 6.404 8 N -0.341 5.341 9 C -0.012 4.012 10 H 0.152 0.848 11 C -0.195 4.195 12 H 0.122 0.878 13 C 0.027 3.973 14 N -0.321 5.321 15 C -0.460 4.460 16 H 0.083 0.917 17 C -0.227 4.227 18 N -0.557 5.557 19 Si 0.901 3.099 20 H -0.221 1.221 21 H -0.219 1.219 22 H -0.211 1.211 23 C 0.039 3.961 24 C -0.197 4.197 25 H 0.125 0.875 26 C -0.188 4.188 27 C 0.304 3.696 28 O -0.408 6.408 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.235 0.765 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.126 0.874 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.420 -1.521 19.810 21.209 hybrid contribution -0.623 -1.133 1.278 1.818 sum -8.043 -2.654 21.088 22.725 Atomic orbital electron populations 1.21578 0.77666 1.03773 1.01776 1.48079 1.06824 1.07167 1.73252 1.22025 0.88353 0.88042 1.02365 1.22338 1.00159 0.98001 0.94254 0.85284 1.20149 0.81727 0.78131 0.89259 1.90729 1.41491 1.42941 1.65284 1.45289 1.20664 1.60173 1.07993 1.22533 0.95480 1.03702 0.79489 0.84802 1.24326 1.03025 0.93621 0.98517 0.87763 1.21134 0.93690 0.94598 0.87863 1.45255 1.46344 1.10280 1.30173 1.19745 1.25248 0.95246 1.05756 0.91707 1.25898 1.04697 0.93294 0.98826 1.70739 1.14205 1.28851 1.41926 0.83446 0.75477 0.75545 0.75443 1.22053 1.21866 1.21074 1.21028 0.99624 0.90701 0.84725 1.25073 0.95549 0.98974 1.00151 0.87477 1.22396 0.95825 0.95083 1.05464 1.20783 0.89094 0.84496 0.75253 1.90739 1.78513 1.21039 1.50553 0.89939 0.91942 0.91658 0.89994 0.88130 0.76547 0.95618 0.92710 0.91948 0.91332 0.95392 0.87414 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 11.14 59.85 0.67 1.43 16 2 N -0.62 -6.02 3.33 -180.28 -0.60 -6.62 16 3 C 0.12 0.86 6.73 -3.12 -0.02 0.84 16 4 C -0.13 -0.90 3.55 -90.14 -0.32 -1.22 16 5 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 6 C 0.52 6.17 7.16 -10.99 -0.08 6.09 16 7 O -0.53 -8.50 15.07 5.55 0.08 -8.41 16 8 N -0.69 -8.02 5.30 -51.65 -0.27 -8.30 16 9 C 0.09 1.47 6.20 -65.69 -0.41 1.06 16 10 H 0.13 2.43 7.40 -51.93 -0.38 2.04 16 11 C -0.17 -2.94 6.91 -89.22 -0.62 -3.56 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 13 C 0.15 3.23 7.04 -2.41 -0.02 3.22 16 14 N -0.60 -15.17 3.23 -169.11 -0.55 -15.71 16 15 C -0.33 -9.39 10.19 -15.06 -0.15 -9.55 16 16 H 0.07 1.82 7.94 -52.49 -0.42 1.40 16 17 C -0.03 -0.72 5.12 -17.43 -0.09 -0.81 16 18 N -0.92 -27.73 12.82 55.49 0.71 -27.02 16 19 Si 1.07 25.20 29.98 -169.99 -5.10 20.10 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.17 3.82 5.01 -2.62 -0.01 3.80 16 24 C -0.18 -3.12 7.22 -87.20 -0.63 -3.75 16 25 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 26 C -0.15 -1.09 6.39 -26.74 -0.17 -1.26 16 27 C 0.52 5.96 8.02 -10.86 -0.09 5.87 16 28 O -0.53 -8.29 17.35 5.56 0.10 -8.20 16 29 H 0.08 0.76 7.53 -51.93 -0.39 0.36 16 30 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.90 6.94 -51.93 -0.36 0.54 16 34 H 0.40 3.37 8.64 -40.82 -0.35 3.02 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.27 8.20 6.41 -40.82 -0.26 7.94 16 38 H 0.07 1.73 7.47 -51.93 -0.39 1.35 16 39 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 40 H 0.11 0.82 7.51 -51.93 -0.39 0.43 16 41 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -36.50 339.85 -8.38 -44.89 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.94 Total: 1.97 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.94 Total: 2.18 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.71 Total: -57.65 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.18 Total: -16.61 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.10 Total: 20.10 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.50 -8.38 -44.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960170088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.264 kcal (2) G-P(sol) polarization free energy of solvation -36.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds