Wall clock time and date at job start Tue Mar 31 2020 03:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46767 * 124.35159 * 2 1 4 4 C 1.54481 * 105.47573 * 197.04331 * 3 2 1 5 5 H 1.08996 * 111.00344 * 216.45598 * 4 3 2 6 6 C 1.50695 * 110.96904 * 92.70448 * 4 3 2 7 7 O 1.21286 * 120.00161 * 6.17062 * 6 4 3 8 8 N 1.34773 * 120.00046 * 186.16402 * 6 4 3 9 9 C 1.46499 * 119.99942 * 180.02562 * 8 6 4 10 10 H 1.09001 * 115.49715 * 350.38829 * 9 8 6 11 11 C 1.53003 * 117.44409 * 205.00138 * 9 8 6 12 12 H 1.08995 * 119.53988 * 5.72132 * 11 9 8 13 13 C 1.54389 * 118.12264 * 160.81259 * 11 9 8 14 14 N 1.48141 * 104.61972 * 89.21099 * 13 11 9 15 15 C 1.36937 * 127.83847 * 140.41544 * 14 13 11 16 16 H 1.07999 * 120.00246 * 338.92854 * 15 14 13 17 17 C 1.38815 * 119.99944 * 158.93083 * 15 14 13 18 18 N 1.31622 * 120.00119 * 335.61650 * 17 15 14 19 19 Si 1.86801 * 119.99974 * 155.61203 * 17 15 14 20 20 H 1.48501 * 109.46843 * 90.00213 * 19 17 15 21 21 H 1.48498 * 109.47072 * 330.00315 * 19 17 15 22 22 H 1.48498 * 109.47087 * 209.99922 * 19 17 15 23 23 C 1.48145 * 104.32122 * 320.67503 * 14 13 11 24 24 C 1.53987 * 104.81847 * 39.27719 * 23 14 13 25 25 H 1.08998 * 118.03460 * 115.98808 * 24 23 14 26 26 C 1.54630 * 101.76329 * 334.59023 * 4 3 2 27 27 C 1.34421 * 124.34870 * 180.02562 * 2 1 3 28 28 O 1.21282 * 124.94007 * 359.53157 * 27 2 1 29 29 H 1.08997 * 109.47202 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46682 * 299.99299 * 1 2 3 31 31 H 1.09004 * 109.47318 * 59.98692 * 1 2 3 32 32 H 1.09001 * 110.23899 * 78.04762 * 3 2 1 33 33 H 1.08997 * 110.24811 * 316.04729 * 3 2 1 34 34 H 0.97003 * 120.00208 * 0.02562 * 8 6 4 35 35 H 1.09000 * 110.40621 * 330.42534 * 13 11 9 36 36 H 1.09000 * 110.50656 * 208.05012 * 13 11 9 37 37 H 0.97006 * 119.99914 * 354.46921 * 18 17 15 38 38 H 1.09003 * 110.40893 * 158.10934 * 23 14 13 39 39 H 1.09003 * 110.41009 * 280.54046 * 23 14 13 40 40 H 1.08999 * 110.48807 * 143.47504 * 26 4 3 41 41 H 1.09000 * 110.48430 * 266.11704 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7488 -0.4364 5 1 4.4759 1.3008 0.0954 6 6 3.8743 0.8821 -1.9274 7 8 3.0099 1.4113 -2.5936 8 7 4.9900 0.4133 -2.5205 9 6 5.1589 0.5434 -3.9700 10 1 4.2775 0.8786 -4.5168 11 6 6.0807 -0.4604 -4.6654 12 1 6.5037 -1.2868 -4.0942 13 6 5.9361 -0.6452 -6.1914 14 7 6.8520 0.3604 -6.7782 15 6 7.6679 0.2183 -7.8688 16 1 7.9580 -0.7674 -8.2014 17 6 8.1222 1.3412 -8.5467 18 7 7.4419 2.4664 -8.4865 19 14 9.6992 1.2555 -9.5444 20 1 9.3823 0.8489 -10.9371 21 1 10.6171 0.2600 -8.9348 22 1 10.3516 2.5894 -9.5545 23 6 6.6898 1.5525 -5.9137 24 6 6.5745 0.9900 -4.4849 25 1 7.3553 1.2463 -3.7689 26 6 3.6897 -0.7379 -0.0113 27 6 2.2234 -1.1098 -0.0005 28 8 1.7945 -2.2442 0.0071 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 2.3310 1.6425 1.0005 33 1 1.8982 1.9385 -0.7098 34 1 5.6813 -0.0102 -1.9878 35 1 4.9095 -0.4514 -6.5021 36 1 6.2376 -1.6509 -6.4845 37 1 6.5832 2.4904 -8.0359 38 1 7.5607 2.2029 -5.9959 39 1 5.7827 2.0948 -6.1804 40 1 4.2323 -1.3458 -0.7353 41 1 4.1198 -0.8534 0.9836 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960170088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:53 Heat of formation + Delta-G solvation = -30.838229 kcal Electronic energy + Delta-G solvation = -23320.170023 eV Core-core repulsion = 19814.824995 eV Total energy + Delta-G solvation = -3505.345029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.98940 -40.75316 -39.73123 -37.35865 -36.28898 -34.71161 -33.74220 -31.87384 -29.22028 -28.76352 -27.99133 -27.24631 -24.83356 -23.22011 -22.05147 -21.22752 -20.96646 -20.61570 -19.54169 -18.73971 -17.90741 -17.59785 -16.91121 -16.52574 -16.16320 -15.94073 -15.75140 -15.40156 -15.20761 -14.96299 -14.66959 -14.60470 -13.88927 -13.76824 -13.55829 -13.37813 -13.21698 -13.15539 -12.90232 -12.62683 -12.55303 -12.48503 -12.32683 -11.90331 -11.83232 -11.65635 -11.10219 -10.98776 -10.85261 -10.62982 -9.77835 -9.74984 -9.12139 -8.40820 -5.43296 1.40006 1.46674 1.57259 1.65891 1.82488 1.83919 2.07553 2.60922 2.66148 3.15455 3.21304 3.30421 3.40201 3.55105 3.66174 3.77225 3.85577 3.99482 4.25567 4.29339 4.31688 4.35891 4.45538 4.63690 4.66620 4.68773 4.75204 4.79450 4.81659 4.83245 4.86445 4.97626 5.15788 5.20384 5.41829 5.46040 5.60299 6.04824 6.23203 6.44043 6.77431 7.05233 7.14257 7.61233 8.28072 8.95038 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.039213 B = 0.002864 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.877664 B = 9772.934757 C = 9950.345148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.624 5.624 3 C 0.111 3.889 4 C -0.109 4.109 5 H 0.181 0.819 6 C 0.516 3.484 7 O -0.577 6.577 8 N -0.678 5.678 9 C 0.119 3.881 10 H 0.105 0.895 11 C -0.157 4.157 12 H 0.141 0.859 13 C 0.144 3.856 14 N -0.622 5.622 15 C -0.342 4.342 16 H 0.064 0.936 17 C -0.080 4.080 18 N -0.947 5.947 19 Si 1.125 2.875 20 H -0.282 1.282 21 H -0.272 1.272 22 H -0.288 1.288 23 C 0.169 3.831 24 C -0.175 4.175 25 H 0.136 0.864 26 C -0.136 4.136 27 C 0.497 3.503 28 O -0.587 6.587 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.422 0.578 35 H 0.014 0.986 36 H 0.060 0.940 37 H 0.253 0.747 38 H 0.038 0.962 39 H 0.002 0.998 40 H 0.108 0.892 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.064 -2.637 24.385 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.356 5.356 3 C -0.011 4.011 4 C -0.130 4.130 5 H 0.199 0.801 6 C 0.304 3.696 7 O -0.456 6.456 8 N -0.328 5.328 9 C 0.011 3.989 10 H 0.123 0.877 11 C -0.178 4.178 12 H 0.159 0.841 13 C 0.019 3.981 14 N -0.347 5.347 15 C -0.470 4.470 16 H 0.081 0.919 17 C -0.275 4.275 18 N -0.589 5.589 19 Si 0.948 3.052 20 H -0.208 1.208 21 H -0.197 1.197 22 H -0.214 1.214 23 C 0.043 3.957 24 C -0.197 4.197 25 H 0.154 0.846 26 C -0.176 4.176 27 C 0.287 3.713 28 O -0.468 6.468 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.142 0.858 33 H 0.101 0.899 34 H 0.260 0.740 35 H 0.031 0.969 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.020 0.980 40 H 0.126 0.874 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.858 -1.983 22.894 23.715 hybrid contribution -1.277 -0.976 0.319 1.639 sum -7.135 -2.959 23.213 24.464 Atomic orbital electron populations 1.21666 0.77555 1.03068 1.03056 1.48360 1.07462 1.07813 1.72014 1.22278 0.87917 0.86707 1.04231 1.22434 1.01494 0.98625 0.90400 0.80145 1.21128 0.80589 0.76594 0.91306 1.90730 1.43067 1.44950 1.66880 1.45108 1.21607 1.60188 1.05941 1.21997 0.93196 1.01755 0.81973 0.87703 1.24179 1.03352 0.94257 0.96001 0.84141 1.21272 0.92201 0.93803 0.90823 1.45553 1.47074 1.11773 1.30308 1.20063 1.25135 0.95267 1.06541 0.91855 1.27410 1.07222 0.92896 1.00019 1.70868 1.14174 1.29999 1.43833 0.82750 0.71969 0.75797 0.74665 1.20828 1.19666 1.21405 1.20834 0.97004 0.89835 0.88064 1.24816 0.98085 0.99041 0.97727 0.84623 1.22459 0.92720 0.94599 1.07792 1.21624 0.91224 0.84023 0.74479 1.90704 1.79791 1.23096 1.53232 0.91646 0.89103 0.91922 0.85800 0.89881 0.73976 0.96866 0.92169 0.93744 0.94361 0.97989 0.87363 0.82374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.39 11.14 127.77 1.42 2.81 16 2 N -0.62 -11.00 3.33 -842.88 -2.81 -13.81 16 3 C 0.11 1.26 6.73 86.83 0.58 1.85 16 4 C -0.11 -1.05 3.55 -10.48 -0.04 -1.08 16 5 H 0.18 0.03 8.14 -2.39 -0.02 0.01 16 6 C 0.52 10.79 7.16 87.66 0.63 11.42 16 7 O -0.58 -18.18 15.07 -3.05 -0.05 -18.23 16 8 N -0.68 -13.45 5.30 -435.70 -2.31 -15.76 16 9 C 0.12 3.55 6.20 46.44 0.29 3.84 16 10 H 0.11 3.87 7.40 -2.39 -0.02 3.86 16 11 C -0.16 -5.01 6.91 -9.89 -0.07 -5.08 16 12 H 0.14 3.54 8.14 -2.39 -0.02 3.52 16 13 C 0.14 6.12 7.04 86.54 0.61 6.72 16 14 N -0.62 -32.42 3.23 -688.94 -2.22 -34.64 16 15 C -0.34 -19.68 10.19 84.03 0.86 -18.83 16 16 H 0.06 3.58 7.94 -2.91 -0.02 3.55 16 17 C -0.08 -4.66 5.12 84.86 0.43 -4.22 16 18 N -0.95 -59.38 12.82 21.65 0.28 -59.10 16 19 Si 1.13 51.16 29.98 68.60 2.06 53.22 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 23 C 0.17 8.06 5.01 86.40 0.43 8.50 16 24 C -0.18 -6.00 7.22 -8.58 -0.06 -6.07 16 25 H 0.14 3.91 8.14 -2.39 -0.02 3.89 16 26 C -0.14 -1.42 6.39 30.59 0.20 -1.23 16 27 C 0.50 10.63 8.02 87.90 0.71 11.33 16 28 O -0.59 -18.30 17.35 -3.04 -0.05 -18.35 16 29 H 0.06 1.24 7.53 -2.39 -0.02 1.23 16 30 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 1.32 6.94 -2.39 -0.02 1.30 16 34 H 0.42 4.95 8.64 -92.71 -0.80 4.14 16 35 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 37 H 0.25 16.25 6.41 -92.70 -0.59 15.66 16 38 H 0.04 2.02 7.47 -2.39 -0.02 2.00 16 39 H 0.00 0.12 7.67 -2.39 -0.02 0.10 16 40 H 0.11 1.20 7.51 -2.39 -0.02 1.18 16 41 H 0.16 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -86.37 339.85 1.31 -85.07 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.42 Total: 11.63 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 5.99 Total: 9.96 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -7.06 Total: -123.31 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.10 Total: -36.58 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 2.06 Total: 53.22 kcal Total: -86.37 1.31 -85.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960170088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.231 kcal (2) G-P(sol) polarization free energy of solvation -86.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds