Wall clock time and date at job start Tue Mar 31 2020 03:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46766 * 124.34696 * 2 1 4 4 C 1.54475 * 105.47204 * 197.03746 * 3 2 1 5 5 H 1.09003 * 110.99792 * 92.71875 * 4 3 2 6 6 C 1.50697 * 110.97230 * 216.46444 * 4 3 2 7 7 O 1.21286 * 120.00021 * 353.83869 * 6 4 3 8 8 N 1.34777 * 120.00483 * 173.83112 * 6 4 3 9 9 C 1.46498 * 120.00301 * 180.02562 * 8 6 4 10 10 H 1.09001 * 115.49542 * 350.38510 * 9 8 6 11 11 C 1.52996 * 117.44170 * 205.00169 * 9 8 6 12 12 H 1.08997 * 119.54105 * 4.11914 * 11 9 8 13 13 C 1.54395 * 118.89841 * 161.25518 * 11 9 8 14 14 N 1.47254 * 105.04823 * 85.90139 * 13 11 9 15 15 C 1.36948 * 127.37312 * 140.92264 * 14 13 11 16 16 H 1.08002 * 119.99897 * 345.23851 * 15 14 13 17 17 C 1.38813 * 119.99700 * 165.24479 * 15 14 13 18 18 N 1.31624 * 119.99937 * 350.56703 * 17 15 14 19 19 Si 1.86796 * 119.99818 * 170.57182 * 17 15 14 20 20 H 1.48498 * 109.47197 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47255 * 119.99877 * 19 17 15 22 22 H 1.48502 * 109.46944 * 239.99683 * 19 17 15 23 23 C 1.48139 * 104.78324 * 321.64858 * 14 13 11 24 24 C 1.53005 * 117.43977 * 135.76365 * 9 8 6 25 25 H 1.09001 * 119.54217 * 355.88023 * 24 9 8 26 26 C 1.54624 * 101.76875 * 334.58807 * 4 3 2 27 27 C 1.34416 * 124.35042 * 180.02562 * 2 1 3 28 28 O 1.21284 * 124.94110 * 359.60247 * 27 2 1 29 29 H 1.09005 * 109.47165 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47203 * 299.99892 * 1 2 3 31 31 H 1.09000 * 109.47344 * 59.99629 * 1 2 3 32 32 H 1.09003 * 110.24163 * 78.03780 * 3 2 1 33 33 H 1.08998 * 110.24852 * 316.03903 * 3 2 1 34 34 H 0.97005 * 119.99394 * 0.02562 * 8 6 4 35 35 H 1.09004 * 110.40520 * 205.99569 * 13 11 9 36 36 H 1.08997 * 110.40340 * 328.42803 * 13 11 9 37 37 H 0.96996 * 119.99855 * 180.02562 * 18 17 15 38 38 H 1.09000 * 110.40155 * 280.07275 * 23 14 13 39 39 H 1.08997 * 110.51044 * 157.68924 * 23 14 13 40 40 H 1.09002 * 110.49239 * 143.47155 * 26 4 3 41 41 H 1.09000 * 110.48833 * 266.12135 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7008 0.7489 -0.4362 5 1 3.8269 0.8452 -1.5146 6 6 4.7717 1.5123 0.2995 7 8 4.4683 2.4354 1.0254 8 7 6.0666 1.1694 0.1511 9 6 7.1076 1.9112 0.8668 10 1 6.7757 2.8214 1.3664 11 6 8.5144 1.9098 0.2654 12 1 8.6876 1.4250 -0.6953 13 6 9.5169 2.9966 0.7098 14 7 10.1427 2.4631 1.9313 15 6 11.4564 2.5643 2.3046 16 1 12.2015 2.8637 1.5824 17 6 11.8303 2.2819 3.6113 18 7 10.9100 2.0990 4.5343 19 14 13.6397 2.1616 4.0597 20 1 14.4666 2.4060 2.8506 21 1 13.9620 3.1774 5.0940 22 1 13.9289 0.8054 4.5908 23 6 9.0430 1.7811 2.6525 24 6 8.2138 1.0989 1.5431 25 1 8.1631 0.0101 1.5342 26 6 3.6898 -0.7377 -0.0111 27 6 2.2235 -1.1097 -0.0005 28 8 1.7946 -2.2442 0.0059 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.3308 1.6427 1.0005 33 1 1.8982 1.9385 -0.7099 34 1 6.3093 0.4313 -0.4296 35 1 10.2576 3.1722 -0.0704 36 1 8.9926 3.9209 0.9524 37 1 11.1713 1.9020 5.4474 38 1 8.4336 2.5072 3.1904 39 1 9.4420 1.0363 3.3411 40 1 4.2324 -1.3457 -0.7350 41 1 4.1197 -0.8532 0.9839 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960170100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:59 Heat of formation + Delta-G solvation = -2.384741 kcal Electronic energy + Delta-G solvation = -23064.676209 eV Core-core repulsion = 19560.565017 eV Total energy + Delta-G solvation = -3504.111193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08684 -39.65030 -38.42565 -36.50794 -34.63660 -33.44705 -32.48263 -30.32272 -28.09106 -27.30432 -27.19143 -25.69562 -23.70644 -21.70833 -20.59357 -20.12714 -19.79641 -19.35660 -17.78162 -17.16526 -16.91972 -16.34140 -16.07055 -15.61824 -15.05197 -14.74258 -14.17409 -14.11270 -13.86673 -13.67805 -13.32605 -13.27090 -12.78907 -12.76476 -12.57705 -12.29929 -11.95530 -11.75190 -11.61804 -11.50431 -11.02883 -10.87646 -10.48311 -10.35504 -10.25421 -10.16192 -9.88967 -9.78885 -9.24422 -9.08096 -8.79079 -8.43623 -6.90326 -5.83005 -3.17337 2.23794 2.38980 2.56477 2.96897 3.36146 3.42179 3.44676 3.84096 3.95019 4.21156 4.37215 4.45530 4.50218 4.78850 4.92250 4.98500 5.07165 5.14002 5.21108 5.30407 5.33851 5.34355 5.38059 5.50670 5.54967 5.79765 5.83515 6.04321 6.09462 6.16680 6.45084 6.63326 6.69732 6.70518 6.83983 7.31544 7.40412 7.50521 7.68495 7.80649 8.07503 8.17794 9.07837 9.71253 10.46041 11.31540 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.036843 B = 0.002721 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.798413 B =10288.850577 C =10503.175411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.624 5.624 3 C 0.118 3.882 4 C -0.123 4.123 5 H 0.120 0.880 6 C 0.527 3.473 7 O -0.531 6.531 8 N -0.692 5.692 9 C 0.096 3.904 10 H 0.133 0.867 11 C -0.184 4.184 12 H 0.103 0.897 13 C 0.159 3.841 14 N -0.592 5.592 15 C -0.230 4.230 16 H 0.078 0.922 17 C -0.005 4.005 18 N -0.914 5.914 19 Si 0.913 3.087 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.186 3.814 24 C -0.181 4.181 25 H 0.103 0.897 26 C -0.147 4.147 27 C 0.520 3.480 28 O -0.532 6.532 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.400 0.600 35 H 0.053 0.947 36 H 0.025 0.975 37 H 0.254 0.746 38 H 0.027 0.973 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.283 -3.269 -12.354 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.359 5.359 3 C -0.005 4.005 4 C -0.145 4.145 5 H 0.138 0.862 6 C 0.312 3.688 7 O -0.407 6.407 8 N -0.340 5.340 9 C -0.009 4.009 10 H 0.151 0.849 11 C -0.205 4.205 12 H 0.121 0.879 13 C 0.032 3.968 14 N -0.316 5.316 15 C -0.358 4.358 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.560 5.560 19 Si 0.743 3.257 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.216 1.216 23 C 0.060 3.940 24 C -0.202 4.202 25 H 0.121 0.879 26 C -0.187 4.187 27 C 0.308 3.692 28 O -0.408 6.408 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.234 0.766 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.109 0.891 40 H 0.130 0.870 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.636 -3.193 -11.601 21.350 hybrid contribution 1.045 -0.487 -0.139 1.161 sum -16.590 -3.680 -11.740 20.654 Atomic orbital electron populations 1.21583 0.77696 1.03807 1.01784 1.48194 1.06785 1.07341 1.73567 1.21985 0.87680 0.86755 1.04117 1.22245 0.94589 0.95242 1.02450 0.86199 1.19964 0.83048 0.84006 0.81745 1.90744 1.81830 1.29701 1.38404 1.45341 1.05446 1.35486 1.47757 1.21865 0.82434 0.97873 0.98744 0.84949 1.24349 0.94966 1.03653 0.97523 0.87902 1.20946 0.92693 0.92691 0.90519 1.44964 1.05622 1.61011 1.19961 1.19039 0.81649 1.41389 0.93709 0.90448 1.24899 0.97929 1.02075 0.95315 1.69910 1.31097 1.53503 1.01455 0.86047 0.84186 0.77383 0.78117 1.20362 1.21647 1.21608 1.21047 0.86846 0.95378 0.90767 1.24752 0.99693 0.98093 0.97701 0.87939 1.22381 0.95595 0.94952 1.05822 1.20766 0.88987 0.84392 0.75081 1.90740 1.78495 1.21041 1.50562 0.89846 0.91787 0.91887 0.88817 0.89523 0.76569 0.92863 0.95761 0.93538 0.95472 0.89136 0.86962 0.86891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 11.14 59.85 0.67 1.30 16 2 N -0.62 -5.53 3.33 -180.29 -0.60 -6.13 16 3 C 0.12 0.93 6.66 -3.12 -0.02 0.91 16 4 C -0.12 -0.93 3.54 -90.15 -0.32 -1.25 16 5 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 6 C 0.53 5.99 7.07 -10.99 -0.08 5.91 16 7 O -0.53 -8.20 15.14 5.55 0.08 -8.12 16 8 N -0.69 -7.78 5.51 -53.81 -0.30 -8.08 16 9 C 0.10 1.48 6.00 -67.93 -0.41 1.08 16 10 H 0.13 2.35 7.40 -51.93 -0.38 1.96 16 11 C -0.18 -3.02 7.04 -89.22 -0.63 -3.64 16 12 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 13 C 0.16 3.21 7.01 -2.90 -0.02 3.19 16 14 N -0.59 -14.82 3.36 -169.58 -0.57 -15.39 16 15 C -0.23 -6.28 10.32 -15.05 -0.16 -6.44 16 16 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 17 C 0.00 -0.14 5.40 -17.43 -0.09 -0.23 16 18 N -0.91 -26.49 10.88 55.49 0.60 -25.89 16 19 Si 0.91 21.64 29.56 -169.99 -5.03 16.62 16 20 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.19 4.36 5.71 -2.41 -0.01 4.35 16 24 C -0.18 -3.24 7.06 -89.22 -0.63 -3.87 16 25 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 26 C -0.15 -1.17 6.37 -26.74 -0.17 -1.34 16 27 C 0.52 5.63 8.02 -10.86 -0.09 5.55 16 28 O -0.53 -7.78 17.35 5.55 0.10 -7.68 16 29 H 0.08 0.65 7.53 -51.93 -0.39 0.25 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.90 7.06 -51.93 -0.37 0.53 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.40 3.31 8.83 -40.82 -0.36 2.95 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 2.38 6.53 -51.93 -0.34 2.05 16 40 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.11 0.97 7.89 -51.93 -0.41 0.56 16 LS Contribution 340.62 15.07 5.13 5.13 Total: -1.00 -34.13 340.62 -8.56 -42.69 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.03 Total: 1.35 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -1.96 Total: 5.50 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.86 Total: -55.48 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.18 Total: -15.80 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.13 -8.56 -42.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960170100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.307 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds