Wall clock time and date at job start Tue Mar 31 2020 03:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46762 * 124.34623 * 2 1 4 4 C 1.54482 * 105.47090 * 196.99412 * 3 2 1 5 5 C 1.54623 * 101.76564 * 334.58380 * 4 3 2 6 6 H 1.09002 * 110.48594 * 266.11689 * 5 4 3 7 7 C 1.50701 * 110.60197 * 143.53185 * 5 4 3 8 8 O 1.21285 * 119.99698 * 1.92016 * 7 5 4 9 9 N 1.34772 * 120.00157 * 181.91457 * 7 5 4 10 10 C 1.46504 * 119.99972 * 180.02562 * 9 7 5 11 11 H 1.08997 * 115.51198 * 350.41740 * 10 9 7 12 12 C 1.52998 * 117.44124 * 205.00029 * 10 9 7 13 13 H 1.09001 * 119.54105 * 5.71347 * 12 10 9 14 14 C 1.54386 * 118.12071 * 160.80614 * 12 10 9 15 15 N 1.48147 * 104.61492 * 87.19355 * 14 12 10 16 16 C 1.36940 * 127.83697 * 140.41290 * 15 14 12 17 17 H 1.07998 * 119.99753 * 195.56528 * 16 15 14 18 18 C 1.38810 * 120.00357 * 15.57159 * 16 15 14 19 19 N 1.31622 * 119.99527 * 9.10302 * 18 16 15 20 20 Si 1.86793 * 120.00316 * 189.09709 * 18 16 15 21 21 H 1.48498 * 109.47036 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46942 * 119.99959 * 20 18 16 23 23 H 1.48502 * 109.47549 * 239.99797 * 20 18 16 24 24 C 1.48144 * 104.32625 * 320.41291 * 15 14 12 25 25 C 1.52995 * 117.44153 * 135.76392 * 10 9 7 26 26 H 1.08999 * 119.54379 * 355.87688 * 25 10 9 27 27 C 1.34414 * 124.35118 * 179.97438 * 2 1 3 28 28 O 1.21280 * 124.94302 * 359.64553 * 27 2 1 29 29 H 1.09004 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47504 * 300.05149 * 1 2 3 31 31 H 1.08999 * 109.47199 * 60.05364 * 1 2 3 32 32 H 1.09001 * 110.24405 * 315.98927 * 3 2 1 33 33 H 1.08993 * 110.25079 * 77.90827 * 3 2 1 34 34 H 1.08999 * 110.96650 * 216.46085 * 4 3 2 35 35 H 1.09008 * 110.97165 * 92.70177 * 4 3 2 36 36 H 0.97006 * 119.99937 * 0.02562 * 9 7 5 37 37 H 1.09003 * 110.40798 * 205.97718 * 14 12 10 38 38 H 1.08992 * 110.41222 * 328.29081 * 14 12 10 39 39 H 0.97001 * 119.99704 * 179.97438 * 19 18 16 40 40 H 1.08993 * 110.40832 * 158.36747 * 24 15 14 41 41 H 1.09000 * 110.40611 * 280.80865 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7011 0.7486 -0.4352 5 6 3.6898 -0.7377 -0.0092 6 1 4.1192 -0.8527 0.9860 7 6 4.4412 -1.5810 -1.0069 8 8 4.9782 -1.0580 -1.9604 9 7 4.5165 -2.9161 -0.8397 10 6 5.2475 -3.7358 -1.8093 11 1 5.5614 -3.2209 -2.7172 12 6 4.8437 -5.2061 -1.9362 13 1 3.9794 -5.5756 -1.3844 14 6 5.2534 -5.9653 -3.2165 15 7 6.6111 -6.4822 -2.9262 16 6 7.1357 -7.7013 -3.2634 17 1 8.0373 -8.0526 -2.7837 18 6 6.5088 -8.4857 -4.2219 19 7 5.5192 -7.9893 -4.9337 20 14 7.0696 -10.2453 -4.5015 21 1 8.1907 -10.5599 -3.5799 22 1 5.9394 -11.1725 -4.2400 23 1 7.5240 -10.4028 -5.9065 24 6 7.2726 -5.3809 -2.1884 25 6 6.1749 -4.8207 -1.2584 26 1 6.3183 -4.9092 -0.1815 27 6 2.2234 -1.1097 0.0005 28 8 1.7946 -2.2442 0.0072 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5146 0.8895 31 1 -0.3633 0.5130 -0.8904 32 1 1.8985 1.9381 -0.7105 33 1 2.3290 1.6441 0.9999 34 1 4.4752 1.3012 0.0973 35 1 3.8273 0.8444 -1.5136 36 1 4.0867 -3.3344 -0.0772 37 1 4.5656 -6.7894 -3.4062 38 1 5.2773 -5.2872 -4.0694 39 1 5.0813 -8.5372 -5.6038 40 1 8.1081 -5.7639 -1.6026 41 1 7.6137 -4.6109 -2.8804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961542370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:13 Heat of formation + Delta-G solvation = 0.039926 kcal Electronic energy + Delta-G solvation = -23378.340532 eV Core-core repulsion = 19874.334481 eV Total energy + Delta-G solvation = -3504.006051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.16484 -39.37398 -38.17006 -36.73244 -34.41882 -33.22621 -32.48988 -30.26282 -28.31425 -27.13100 -27.09531 -25.58781 -23.16955 -21.59016 -20.75732 -20.33183 -19.58494 -19.22967 -17.60613 -17.17697 -16.81574 -16.52574 -16.13812 -15.45836 -14.73515 -14.61844 -14.26282 -14.04459 -13.68653 -13.50711 -13.20650 -13.14754 -12.84070 -12.71882 -12.52995 -12.22347 -12.08731 -11.48379 -11.45791 -11.44562 -10.96014 -10.82295 -10.34252 -10.23107 -10.15333 -10.09779 -9.85769 -9.69543 -9.14128 -9.11609 -8.70105 -8.27863 -6.83097 -5.76267 -3.10542 2.07382 2.45161 2.75565 3.15230 3.40681 3.46226 3.48976 3.88039 4.03583 4.37745 4.47363 4.51929 4.55808 4.82379 4.89562 4.91798 5.10316 5.13546 5.23209 5.37435 5.42935 5.44159 5.46522 5.61324 5.74489 5.88003 5.95314 6.07238 6.20631 6.30466 6.57965 6.64903 6.73117 6.84918 6.94680 7.40041 7.57523 7.60084 7.75631 7.77212 8.23522 8.24132 9.14229 9.77061 10.54362 11.38155 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034594 B = 0.003013 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.205417 B = 9290.119182 C = 9705.904204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.622 5.622 3 C 0.101 3.899 4 C -0.116 4.116 5 C -0.149 4.149 6 H 0.135 0.865 7 C 0.533 3.467 8 O -0.534 6.534 9 N -0.683 5.683 10 C 0.094 3.906 11 H 0.131 0.869 12 C -0.178 4.178 13 H 0.104 0.896 14 C 0.185 3.815 15 N -0.593 5.593 16 C -0.226 4.226 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.914 5.914 20 Si 0.913 3.087 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.156 3.844 25 C -0.183 4.183 26 H 0.103 0.897 27 C 0.526 3.474 28 O -0.514 6.514 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.405 0.595 37 H 0.091 0.909 38 H 0.026 0.974 39 H 0.254 0.746 40 H 0.052 0.948 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.127 20.295 13.432 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.357 5.357 3 C -0.022 4.022 4 C -0.154 4.154 5 C -0.174 4.174 6 H 0.153 0.847 7 C 0.317 3.683 8 O -0.411 6.411 9 N -0.330 5.330 10 C -0.011 4.011 11 H 0.149 0.851 12 C -0.199 4.199 13 H 0.122 0.878 14 C 0.059 3.941 15 N -0.317 5.317 16 C -0.354 4.354 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.561 5.561 20 Si 0.743 3.257 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.030 3.970 25 C -0.204 4.204 26 H 0.121 0.879 27 C 0.312 3.688 28 O -0.389 6.389 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.240 0.760 37 H 0.109 0.891 38 H 0.044 0.956 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.082 19.821 12.576 24.826 hybrid contribution -0.141 -1.019 0.437 1.117 sum -8.223 18.802 13.012 24.299 Atomic orbital electron populations 1.21601 0.77528 1.04096 1.01619 1.48065 1.06740 1.07235 1.73661 1.22184 0.90495 0.87368 1.02121 1.22607 0.96208 0.91713 1.04893 1.22178 0.94857 0.97933 1.02420 0.84732 1.19626 0.80385 0.82465 0.85790 1.90711 1.47011 1.72271 1.31081 1.45329 1.53329 1.06207 1.28154 1.21861 0.98125 0.87251 0.93904 0.85139 1.24642 0.97748 0.93999 1.03493 0.87755 1.21055 0.88093 0.95802 0.89128 1.45188 1.09197 1.12587 1.64692 1.19039 1.08841 0.91276 1.16279 0.90470 1.24911 0.99305 0.99268 0.96871 1.69915 1.25949 1.35365 1.24832 0.86033 0.77793 0.84262 0.77573 1.20377 1.21645 1.21691 1.21112 0.92668 0.90714 0.92538 1.24368 0.94688 1.02069 0.99276 0.87937 1.20348 0.87994 0.84748 0.75688 1.90784 1.77970 1.20654 1.49506 0.89686 0.91888 0.91824 0.89839 0.90686 0.88395 0.87886 0.76007 0.89062 0.95649 0.93596 0.92982 0.95473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 11.14 59.85 0.67 1.30 16 2 N -0.62 -5.41 3.33 -180.29 -0.60 -6.01 16 3 C 0.10 0.57 7.35 -3.12 -0.02 0.54 16 4 C -0.12 -0.85 6.47 -25.10 -0.16 -1.02 16 5 C -0.15 -1.49 3.32 -91.78 -0.30 -1.79 16 6 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 7 C 0.53 7.73 7.14 -10.99 -0.08 7.65 16 8 O -0.53 -9.41 15.08 5.55 0.08 -9.33 16 9 N -0.68 -10.36 5.27 -53.81 -0.28 -10.64 16 10 C 0.09 1.71 5.98 -67.93 -0.41 1.31 16 11 H 0.13 2.62 7.40 -51.93 -0.38 2.24 16 12 C -0.18 -3.60 7.05 -89.23 -0.63 -4.23 16 13 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 14 C 0.19 4.65 5.70 -2.41 -0.01 4.63 16 15 N -0.59 -15.65 3.38 -168.86 -0.57 -16.22 16 16 C -0.23 -6.43 10.35 -15.06 -0.16 -6.58 16 17 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 18 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 19 N -0.91 -27.34 10.86 55.49 0.60 -26.74 16 20 Si 0.91 22.28 29.56 -169.99 -5.03 17.25 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 24 C 0.16 3.41 7.04 -2.41 -0.02 3.39 16 25 C -0.18 -3.42 7.06 -89.22 -0.63 -4.05 16 26 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 27 C 0.53 6.16 7.44 -10.86 -0.08 6.08 16 28 O -0.51 -7.86 16.31 5.56 0.09 -7.77 16 29 H 0.08 0.71 7.53 -51.93 -0.39 0.32 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.98 7.04 -51.92 -0.37 0.61 16 36 H 0.40 5.55 8.19 -40.82 -0.33 5.22 16 37 H 0.09 2.54 6.51 -51.93 -0.34 2.20 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -35.00 338.96 -8.53 -43.53 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.01 Total: 3.85 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.93 Total: 6.96 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.85 Total: -59.61 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: 0.17 Total: -17.10 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.00 -8.53 -43.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961542370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.573 kcal (2) G-P(sol) polarization free energy of solvation -35.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds