Wall clock time and date at job start Tue Mar 31 2020 03:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46762 * 124.34623 * 2 1 4 4 C 1.54482 * 105.47090 * 196.99412 * 3 2 1 5 5 C 1.54623 * 101.76564 * 334.58380 * 4 3 2 6 6 H 1.09002 * 110.48594 * 266.11689 * 5 4 3 7 7 C 1.50701 * 110.60197 * 143.53185 * 5 4 3 8 8 O 1.21285 * 119.99698 * 1.92016 * 7 5 4 9 9 N 1.34772 * 120.00157 * 181.91457 * 7 5 4 10 10 C 1.46504 * 119.99972 * 180.02562 * 9 7 5 11 11 H 1.08997 * 115.51198 * 350.41740 * 10 9 7 12 12 C 1.52998 * 117.44124 * 205.00029 * 10 9 7 13 13 H 1.09001 * 119.54105 * 5.71347 * 12 10 9 14 14 C 1.54386 * 118.12071 * 160.80614 * 12 10 9 15 15 N 1.48147 * 104.61492 * 87.19355 * 14 12 10 16 16 C 1.36940 * 127.83697 * 140.41290 * 15 14 12 17 17 H 1.07998 * 119.99753 * 195.56528 * 16 15 14 18 18 C 1.38810 * 120.00357 * 15.57159 * 16 15 14 19 19 N 1.31622 * 119.99527 * 9.10302 * 18 16 15 20 20 Si 1.86793 * 120.00316 * 189.09709 * 18 16 15 21 21 H 1.48498 * 109.47036 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46942 * 119.99959 * 20 18 16 23 23 H 1.48502 * 109.47549 * 239.99797 * 20 18 16 24 24 C 1.48144 * 104.32625 * 320.41291 * 15 14 12 25 25 C 1.52995 * 117.44153 * 135.76392 * 10 9 7 26 26 H 1.08999 * 119.54379 * 355.87688 * 25 10 9 27 27 C 1.34414 * 124.35118 * 179.97438 * 2 1 3 28 28 O 1.21280 * 124.94302 * 359.64553 * 27 2 1 29 29 H 1.09004 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47504 * 300.05149 * 1 2 3 31 31 H 1.08999 * 109.47199 * 60.05364 * 1 2 3 32 32 H 1.09001 * 110.24405 * 315.98927 * 3 2 1 33 33 H 1.08993 * 110.25079 * 77.90827 * 3 2 1 34 34 H 1.08999 * 110.96650 * 216.46085 * 4 3 2 35 35 H 1.09008 * 110.97165 * 92.70177 * 4 3 2 36 36 H 0.97006 * 119.99937 * 0.02562 * 9 7 5 37 37 H 1.09003 * 110.40798 * 205.97718 * 14 12 10 38 38 H 1.08992 * 110.41222 * 328.29081 * 14 12 10 39 39 H 0.97001 * 119.99704 * 179.97438 * 19 18 16 40 40 H 1.08993 * 110.40832 * 158.36747 * 24 15 14 41 41 H 1.09000 * 110.40611 * 280.80865 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7011 0.7486 -0.4352 5 6 3.6898 -0.7377 -0.0092 6 1 4.1192 -0.8527 0.9860 7 6 4.4412 -1.5810 -1.0069 8 8 4.9782 -1.0580 -1.9604 9 7 4.5165 -2.9161 -0.8397 10 6 5.2475 -3.7358 -1.8093 11 1 5.5614 -3.2209 -2.7172 12 6 4.8437 -5.2061 -1.9362 13 1 3.9794 -5.5756 -1.3844 14 6 5.2534 -5.9653 -3.2165 15 7 6.6111 -6.4822 -2.9262 16 6 7.1357 -7.7013 -3.2634 17 1 8.0373 -8.0526 -2.7837 18 6 6.5088 -8.4857 -4.2219 19 7 5.5192 -7.9893 -4.9337 20 14 7.0696 -10.2453 -4.5015 21 1 8.1907 -10.5599 -3.5799 22 1 5.9394 -11.1725 -4.2400 23 1 7.5240 -10.4028 -5.9065 24 6 7.2726 -5.3809 -2.1884 25 6 6.1749 -4.8207 -1.2584 26 1 6.3183 -4.9092 -0.1815 27 6 2.2234 -1.1097 0.0005 28 8 1.7946 -2.2442 0.0072 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5146 0.8895 31 1 -0.3633 0.5130 -0.8904 32 1 1.8985 1.9381 -0.7105 33 1 2.3290 1.6441 0.9999 34 1 4.4752 1.3012 0.0973 35 1 3.8273 0.8444 -1.5136 36 1 4.0867 -3.3344 -0.0772 37 1 4.5656 -6.7894 -3.4062 38 1 5.2773 -5.2872 -4.0694 39 1 5.0813 -8.5372 -5.6038 40 1 8.1081 -5.7639 -1.6026 41 1 7.6137 -4.6109 -2.8804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961542370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:12 Heat of formation + Delta-G solvation = -25.249884 kcal Electronic energy + Delta-G solvation = -23379.437180 eV Core-core repulsion = 19874.334481 eV Total energy + Delta-G solvation = -3505.102700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.05353 -40.74472 -39.59077 -37.55987 -36.09284 -34.43410 -33.76342 -32.10111 -29.12693 -28.94513 -27.80202 -27.46892 -24.30822 -22.96100 -21.96441 -21.77400 -20.93391 -20.56429 -18.90473 -18.51933 -17.95185 -17.66134 -17.26894 -16.75032 -16.29713 -15.74140 -15.57142 -15.20645 -14.92175 -14.76536 -14.66382 -14.39888 -13.90485 -13.73838 -13.44649 -13.38720 -13.26233 -13.11377 -12.92736 -12.76513 -12.66836 -12.13951 -12.02455 -12.02139 -11.89389 -11.69818 -11.25174 -10.95801 -10.87145 -10.72530 -9.76998 -9.74514 -8.94978 -7.93167 -5.30686 1.12869 1.45868 1.47359 1.48235 1.58644 1.90043 2.11969 2.47377 2.79347 3.18397 3.24315 3.31880 3.56862 3.74674 3.79451 3.88520 3.95722 4.09919 4.14719 4.34353 4.36173 4.43138 4.47812 4.65404 4.71629 4.79660 4.86377 4.87434 4.96468 5.00825 5.17541 5.24907 5.37459 5.42506 5.47397 5.49869 5.60710 5.96262 6.13965 6.40230 6.97123 6.97653 7.07798 7.65002 8.43651 9.21148 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034594 B = 0.003013 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.205417 B = 9290.119182 C = 9705.904204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.619 5.619 3 C 0.102 3.898 4 C -0.113 4.113 5 C -0.140 4.140 6 H 0.170 0.830 7 C 0.529 3.471 8 O -0.569 6.569 9 N -0.678 5.678 10 C 0.115 3.885 11 H 0.109 0.891 12 C -0.186 4.186 13 H 0.117 0.883 14 C 0.191 3.809 15 N -0.617 5.617 16 C -0.241 4.241 17 H 0.086 0.914 18 C -0.065 4.065 19 N -0.950 5.950 20 Si 0.985 3.015 21 H -0.262 1.262 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.150 3.850 25 C -0.159 4.159 26 H 0.136 0.864 27 C 0.514 3.486 28 O -0.562 6.562 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.077 0.923 36 H 0.415 0.585 37 H 0.057 0.943 38 H -0.004 1.004 39 H 0.250 0.750 40 H 0.068 0.932 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 22.141 16.094 28.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.353 5.353 3 C -0.019 4.019 4 C -0.150 4.150 5 C -0.164 4.164 6 H 0.187 0.813 7 C 0.315 3.685 8 O -0.448 6.448 9 N -0.326 5.326 10 C 0.008 3.992 11 H 0.127 0.873 12 C -0.207 4.207 13 H 0.134 0.866 14 C 0.065 3.935 15 N -0.341 5.341 16 C -0.369 4.369 17 H 0.103 0.897 18 C -0.259 4.259 19 N -0.597 5.597 20 Si 0.812 3.188 21 H -0.186 1.186 22 H -0.218 1.218 23 H -0.219 1.219 24 C 0.025 3.975 25 C -0.180 4.180 26 H 0.154 0.846 27 C 0.300 3.700 28 O -0.442 6.442 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.147 0.853 35 H 0.096 0.904 36 H 0.252 0.748 37 H 0.075 0.925 38 H 0.014 0.986 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -7.887 21.743 15.284 27.723 hybrid contribution -0.217 -1.458 -0.430 1.535 sum -8.104 20.285 14.854 26.416 Atomic orbital electron populations 1.21760 0.76574 1.03323 1.03680 1.48290 1.07638 1.07508 1.71829 1.22452 0.88658 0.86251 1.04551 1.22681 0.98495 0.90092 1.03780 1.22245 0.93248 0.98337 1.02602 0.81309 1.20449 0.79779 0.82182 0.86059 1.90701 1.48499 1.72823 1.32775 1.45263 1.53128 1.06500 1.27723 1.21416 0.97456 0.86344 0.93963 0.87346 1.24303 0.99301 0.95629 1.01502 0.86553 1.20745 0.87549 0.94514 0.90668 1.45486 1.10157 1.13244 1.65171 1.19468 1.09042 0.92253 1.16162 0.89652 1.25822 0.99671 1.03487 0.96907 1.70124 1.27342 1.36744 1.25526 0.84929 0.77594 0.78909 0.77358 1.18587 1.21754 1.21855 1.21259 0.93967 0.89574 0.92732 1.24297 0.92232 1.01290 1.00181 0.84632 1.20672 0.88946 0.84789 0.75592 1.90755 1.78811 1.22532 1.52052 0.91916 0.89105 0.90429 0.88069 0.87319 0.85334 0.90410 0.74798 0.92463 0.98597 0.94118 0.91381 0.96031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 11.14 127.77 1.42 2.43 16 2 N -0.62 -9.19 3.33 -842.92 -2.81 -12.00 16 3 C 0.10 0.74 7.35 86.83 0.64 1.37 16 4 C -0.11 -1.30 6.47 31.65 0.20 -1.10 16 5 C -0.14 -2.45 3.32 -11.55 -0.04 -2.49 16 6 H 0.17 1.77 8.14 -2.39 -0.02 1.75 16 7 C 0.53 14.77 7.14 87.66 0.63 15.40 16 8 O -0.57 -19.97 15.08 -3.04 -0.05 -20.02 16 9 N -0.68 -19.89 5.27 -442.54 -2.33 -22.22 16 10 C 0.12 4.18 5.98 44.99 0.27 4.45 16 11 H 0.11 4.50 7.40 -2.39 -0.02 4.48 16 12 C -0.19 -7.64 7.05 -9.89 -0.07 -7.71 16 13 H 0.12 4.50 8.14 -2.39 -0.02 4.48 16 14 C 0.19 10.08 5.70 86.53 0.49 10.57 16 15 N -0.62 -33.27 3.38 -688.16 -2.33 -35.59 16 16 C -0.24 -13.86 10.35 84.03 0.87 -12.99 16 17 H 0.09 4.65 7.84 -2.91 -0.02 4.62 16 18 C -0.07 -3.82 5.40 84.86 0.46 -3.36 16 19 N -0.95 -59.05 10.86 21.65 0.24 -58.82 16 20 Si 0.98 46.50 29.56 68.60 2.03 48.52 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 C 0.15 6.52 7.04 86.54 0.61 7.13 16 25 C -0.16 -5.77 7.06 -9.89 -0.07 -5.84 16 26 H 0.14 4.09 8.14 -2.39 -0.02 4.07 16 27 C 0.51 11.24 7.44 87.90 0.65 11.90 16 28 O -0.56 -17.07 16.31 -3.03 -0.05 -17.12 16 29 H 0.06 1.02 7.53 -2.39 -0.02 1.00 16 30 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 1.35 7.04 -2.38 -0.02 1.33 16 36 H 0.42 10.75 8.19 -92.70 -0.76 9.99 16 37 H 0.06 3.37 6.51 -2.39 -0.02 3.36 16 38 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 39 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 40 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -80.19 338.96 1.05 -79.13 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.29 Total: 18.36 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 6.07 Total: 19.76 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -7.23 Total: -128.64 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.10 Total: -37.14 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -80.19 1.05 -79.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961542370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.880 kcal (2) G-P(sol) polarization free energy of solvation -80.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds