Wall clock time and date at job start Tue Mar 31 2020 03:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34413 * 124.34773 * 2 1 4 4 O 1.21281 * 124.94423 * 0.11658 * 3 2 1 5 5 C 1.51279 * 110.11774 * 180.14407 * 3 2 1 6 6 C 1.54630 * 104.19751 * 16.25199 * 5 3 2 7 7 C 1.46765 * 124.35001 * 179.70097 * 2 1 3 8 8 H 1.09001 * 110.24491 * 282.24671 * 7 2 1 9 9 C 1.50700 * 110.24594 * 44.24886 * 7 2 1 10 10 O 1.21281 * 120.00160 * 18.54753 * 9 7 2 11 11 N 1.34778 * 119.99860 * 198.54805 * 9 7 2 12 12 C 1.46497 * 120.00130 * 179.97438 * 11 9 7 13 13 H 1.09002 * 115.51454 * 350.41735 * 12 11 9 14 14 C 1.52995 * 117.44489 * 204.99399 * 12 11 9 15 15 H 1.09005 * 119.53984 * 5.72156 * 14 12 11 16 16 C 1.54385 * 118.12302 * 160.80715 * 14 12 11 17 17 N 1.48142 * 104.61760 * 87.19357 * 16 14 12 18 18 C 1.36940 * 127.83926 * 140.41578 * 17 16 14 19 19 H 1.08001 * 120.00357 * 195.57478 * 18 17 16 20 20 C 1.38819 * 119.99927 * 15.57223 * 18 17 16 21 21 N 1.31611 * 120.00047 * 9.10417 * 20 18 17 22 22 Si 1.86797 * 119.99815 * 189.10431 * 20 18 17 23 23 H 1.48499 * 109.47444 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47339 * 120.00298 * 22 20 18 25 25 H 1.48499 * 109.46863 * 239.99916 * 22 20 18 26 26 C 1.48145 * 104.32411 * 320.41668 * 17 16 14 27 27 C 1.52999 * 117.44261 * 135.75581 * 12 11 9 28 28 H 1.09005 * 119.54173 * 355.88377 * 27 12 11 29 29 H 1.08992 * 109.47180 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.46792 * 120.03111 * 1 2 3 31 31 H 1.09001 * 109.46806 * 240.02113 * 1 2 3 32 32 H 1.09001 * 110.49204 * 134.92771 * 5 3 2 33 33 H 1.09004 * 110.48904 * 257.44205 * 5 3 2 34 34 H 1.08997 * 110.97192 * 93.31785 * 6 5 3 35 35 H 1.08998 * 110.97110 * 217.05061 * 6 5 3 36 36 H 0.97007 * 119.99962 * 359.97438 * 11 9 7 37 37 H 1.08997 * 110.41218 * 205.97975 * 16 14 12 38 38 H 1.09002 * 110.40845 * 328.41286 * 16 14 12 39 39 H 0.96995 * 120.00757 * 180.02562 * 21 20 18 40 40 H 1.09005 * 110.40757 * 158.36578 * 26 17 16 41 41 H 1.08999 * 110.40855 * 280.67532 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1097 0.0000 4 8 1.7946 2.2442 0.0020 5 6 3.6898 0.7379 -0.0036 6 6 3.7027 -0.7497 -0.4252 7 6 2.2931 -1.2117 0.0063 8 1 2.3269 -1.6403 1.0080 9 6 1.7512 -2.2188 -0.9750 10 8 0.9947 -1.8631 -1.8537 11 7 2.1073 -3.5150 -0.8762 12 6 1.5801 -4.4942 -1.8298 13 1 0.7860 -4.1328 -2.4833 14 6 1.5103 -5.9536 -1.3759 15 1 1.7588 -6.2084 -0.3456 16 6 0.5729 -6.9104 -2.1436 17 7 1.3953 -7.4187 -3.2661 18 6 1.4309 -8.6904 -3.7728 19 1 2.2433 -8.9925 -4.4170 20 6 0.4226 -9.5913 -3.4584 21 7 -0.6549 -9.1785 -2.8253 22 14 0.5952 -11.3895 -3.9339 23 1 1.8895 -11.5948 -4.6324 24 1 0.5530 -12.2311 -2.7112 25 1 -0.5201 -11.7719 -4.8368 26 6 2.1704 -6.2391 -3.7161 27 6 2.5636 -5.5110 -2.4127 28 1 3.6220 -5.4396 -2.1621 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5144 -0.8898 31 1 -0.3633 -0.5135 0.8902 32 1 4.2354 1.3441 -0.7267 33 1 4.1163 0.8579 0.9924 34 1 3.8327 -0.8486 -1.5029 35 1 4.4755 -1.3005 0.1110 36 1 2.7127 -3.7995 -0.1737 37 1 0.2587 -7.7321 -1.5001 38 1 -0.2946 -6.3699 -2.5223 39 1 -1.3592 -9.8080 -2.6052 40 1 3.0615 -6.5544 -4.2589 41 1 1.5531 -5.5949 -4.3421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961581449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:06 Heat of formation + Delta-G solvation = 1.846156 kcal Electronic energy + Delta-G solvation = -23316.733238 eV Core-core repulsion = 19812.805511 eV Total energy + Delta-G solvation = -3503.927727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.15736 -39.55830 -38.36581 -36.38105 -34.65312 -33.18920 -32.62856 -30.46321 -28.55224 -27.22517 -26.85395 -25.66257 -23.24183 -21.92009 -20.77706 -20.42143 -19.59749 -19.37288 -17.83670 -17.18190 -16.87235 -16.35634 -16.09803 -15.32733 -15.01603 -14.75912 -14.20718 -14.13748 -13.80892 -13.64069 -13.35618 -13.02100 -12.83166 -12.75279 -12.39143 -12.28956 -12.14030 -11.61565 -11.58065 -11.51053 -11.05083 -10.89249 -10.46844 -10.30223 -10.25610 -10.16302 -10.03466 -9.79958 -9.30223 -8.92684 -8.79555 -8.45114 -6.92743 -5.85165 -3.19627 2.24014 2.30966 2.60691 3.03001 3.34433 3.40611 3.43035 3.90985 3.97902 4.19292 4.32513 4.42109 4.51082 4.63351 4.92531 5.06022 5.12364 5.23348 5.27003 5.30742 5.37998 5.42629 5.48120 5.50548 5.74805 5.76336 5.82323 6.02799 6.11700 6.13970 6.44545 6.62870 6.66106 6.79636 6.82103 7.27246 7.37508 7.46962 7.66083 7.86688 8.06176 8.14567 9.05445 9.68163 10.44462 11.29259 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.045836 B = 0.002797 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.726219 B =10009.556671 C =10309.509452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.599 5.599 3 C 0.519 3.481 4 O -0.532 6.532 5 C -0.153 4.153 6 C -0.121 4.121 7 C 0.114 3.886 8 H 0.105 0.895 9 C 0.508 3.492 10 O -0.523 6.523 11 N -0.691 5.691 12 C 0.094 3.906 13 H 0.131 0.869 14 C -0.178 4.178 15 H 0.104 0.896 16 C 0.184 3.816 17 N -0.593 5.593 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.005 4.005 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.155 3.845 27 C -0.181 4.181 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.400 0.600 37 H 0.092 0.908 38 H 0.026 0.974 39 H 0.254 0.746 40 H 0.052 0.948 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.416 14.910 9.472 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.333 5.333 3 C 0.307 3.693 4 O -0.409 6.409 5 C -0.193 4.193 6 C -0.159 4.159 7 C 0.005 3.995 8 H 0.123 0.877 9 C 0.292 3.708 10 O -0.398 6.398 11 N -0.340 5.340 12 C -0.012 4.012 13 H 0.149 0.851 14 C -0.199 4.199 15 H 0.122 0.878 16 C 0.058 3.942 17 N -0.316 5.316 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.561 5.561 22 Si 0.743 3.257 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.216 1.216 26 C 0.028 3.972 27 C -0.202 4.202 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.234 0.766 37 H 0.110 0.890 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 8.390 15.526 8.795 19.718 hybrid contribution 0.354 -1.269 0.276 1.346 sum 8.744 14.257 9.070 19.026 Atomic orbital electron populations 1.21789 0.77201 1.03813 1.02872 1.47823 1.06928 1.05610 1.72961 1.20843 0.89255 0.84193 0.75036 1.90731 1.78692 1.20818 1.50631 1.22358 0.94847 0.97006 1.05085 1.22614 0.93934 0.95583 1.03762 1.21638 0.91935 0.86411 0.99469 0.87746 1.20561 0.81623 0.82844 0.85724 1.90720 1.35062 1.79069 1.34963 1.45360 1.48868 1.06900 1.32877 1.21885 0.99821 0.84572 0.94928 0.85093 1.24657 1.03187 0.93369 0.98714 0.87819 1.21071 0.89970 0.93961 0.89177 1.45183 1.47085 1.04897 1.34449 1.19043 1.05066 0.85321 1.26156 0.90431 1.24910 0.95290 0.98942 1.01113 1.69894 1.07564 1.33400 1.45219 0.86033 0.77432 0.84510 0.77688 1.20345 1.21600 1.21644 1.21121 0.95415 0.89014 0.91644 1.24366 0.95512 1.01706 0.98613 0.87846 0.89949 0.89818 0.92279 0.87513 0.87339 0.89100 0.87971 0.76592 0.89003 0.95637 0.93536 0.92957 0.95475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.49 59.85 0.63 1.56 16 2 N -0.60 -6.49 3.00 -174.02 -0.52 -7.01 16 3 C 0.52 5.97 8.02 -10.86 -0.09 5.88 16 4 O -0.53 -8.22 17.35 5.56 0.10 -8.12 16 5 C -0.15 -1.02 6.86 -26.74 -0.18 -1.21 16 6 C -0.12 -0.71 6.68 -25.09 -0.17 -0.88 16 7 C 0.11 0.93 3.71 -68.16 -0.25 0.68 16 8 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 9 C 0.51 5.98 6.69 -10.98 -0.07 5.91 16 10 O -0.52 -8.46 14.05 5.56 0.08 -8.38 16 11 N -0.69 -7.65 5.56 -53.81 -0.30 -7.95 16 12 C 0.09 1.43 5.97 -67.94 -0.41 1.02 16 13 H 0.13 2.34 7.40 -51.93 -0.38 1.96 16 14 C -0.18 -3.09 7.05 -89.23 -0.63 -3.72 16 15 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 16 C 0.18 4.26 5.70 -2.41 -0.01 4.25 16 17 N -0.59 -14.74 3.38 -168.86 -0.57 -15.31 16 18 C -0.23 -6.19 10.35 -15.06 -0.16 -6.35 16 19 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 20 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 21 N -0.91 -26.24 10.86 55.49 0.60 -25.64 16 22 Si 0.91 21.47 29.56 -169.99 -5.03 16.45 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.15 3.14 7.04 -2.41 -0.02 3.12 16 27 C -0.18 -2.96 7.06 -89.22 -0.63 -3.59 16 28 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 29 H 0.08 0.92 7.53 -51.93 -0.39 0.53 16 30 H 0.08 1.07 6.19 -51.93 -0.32 0.75 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.64 7.90 -51.93 -0.41 0.23 16 35 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.40 3.10 8.83 -40.82 -0.36 2.74 16 37 H 0.09 2.37 6.51 -51.93 -0.34 2.03 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 338.06 15.07 5.09 5.09 Total: -1.00 -34.48 338.06 -8.61 -43.08 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.98 Total: 1.36 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -2.08 Total: 6.43 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.79 Total: -55.91 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.17 Total: -16.50 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.48 -8.61 -43.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961581449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.929 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds