Wall clock time and date at job start Tue Mar 31 2020 03:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34413 * 124.34773 * 2 1 4 4 O 1.21281 * 124.94423 * 0.11658 * 3 2 1 5 5 C 1.51279 * 110.11774 * 180.14407 * 3 2 1 6 6 C 1.54630 * 104.19751 * 16.25199 * 5 3 2 7 7 C 1.46765 * 124.35001 * 179.70097 * 2 1 3 8 8 H 1.09001 * 110.24491 * 282.24671 * 7 2 1 9 9 C 1.50700 * 110.24594 * 44.24886 * 7 2 1 10 10 O 1.21281 * 120.00160 * 18.54753 * 9 7 2 11 11 N 1.34778 * 119.99860 * 198.54805 * 9 7 2 12 12 C 1.46497 * 120.00130 * 179.97438 * 11 9 7 13 13 H 1.09002 * 115.51454 * 350.41735 * 12 11 9 14 14 C 1.52995 * 117.44489 * 204.99399 * 12 11 9 15 15 H 1.09005 * 119.53984 * 5.72156 * 14 12 11 16 16 C 1.54385 * 118.12302 * 160.80715 * 14 12 11 17 17 N 1.48142 * 104.61760 * 87.19357 * 16 14 12 18 18 C 1.36940 * 127.83926 * 140.41578 * 17 16 14 19 19 H 1.08001 * 120.00357 * 195.57478 * 18 17 16 20 20 C 1.38819 * 119.99927 * 15.57223 * 18 17 16 21 21 N 1.31611 * 120.00047 * 9.10417 * 20 18 17 22 22 Si 1.86797 * 119.99815 * 189.10431 * 20 18 17 23 23 H 1.48499 * 109.47444 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47339 * 120.00298 * 22 20 18 25 25 H 1.48499 * 109.46863 * 239.99916 * 22 20 18 26 26 C 1.48145 * 104.32411 * 320.41668 * 17 16 14 27 27 C 1.52999 * 117.44261 * 135.75581 * 12 11 9 28 28 H 1.09005 * 119.54173 * 355.88377 * 27 12 11 29 29 H 1.08992 * 109.47180 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.46792 * 120.03111 * 1 2 3 31 31 H 1.09001 * 109.46806 * 240.02113 * 1 2 3 32 32 H 1.09001 * 110.49204 * 134.92771 * 5 3 2 33 33 H 1.09004 * 110.48904 * 257.44205 * 5 3 2 34 34 H 1.08997 * 110.97192 * 93.31785 * 6 5 3 35 35 H 1.08998 * 110.97110 * 217.05061 * 6 5 3 36 36 H 0.97007 * 119.99962 * 359.97438 * 11 9 7 37 37 H 1.08997 * 110.41218 * 205.97975 * 16 14 12 38 38 H 1.09002 * 110.40845 * 328.41286 * 16 14 12 39 39 H 0.96995 * 120.00757 * 180.02562 * 21 20 18 40 40 H 1.09005 * 110.40757 * 158.36578 * 26 17 16 41 41 H 1.08999 * 110.40855 * 280.67532 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1097 0.0000 4 8 1.7946 2.2442 0.0020 5 6 3.6898 0.7379 -0.0036 6 6 3.7027 -0.7497 -0.4252 7 6 2.2931 -1.2117 0.0063 8 1 2.3269 -1.6403 1.0080 9 6 1.7512 -2.2188 -0.9750 10 8 0.9947 -1.8631 -1.8537 11 7 2.1073 -3.5150 -0.8762 12 6 1.5801 -4.4942 -1.8298 13 1 0.7860 -4.1328 -2.4833 14 6 1.5103 -5.9536 -1.3759 15 1 1.7588 -6.2084 -0.3456 16 6 0.5729 -6.9104 -2.1436 17 7 1.3953 -7.4187 -3.2661 18 6 1.4309 -8.6904 -3.7728 19 1 2.2433 -8.9925 -4.4170 20 6 0.4226 -9.5913 -3.4584 21 7 -0.6549 -9.1785 -2.8253 22 14 0.5952 -11.3895 -3.9339 23 1 1.8895 -11.5948 -4.6324 24 1 0.5530 -12.2311 -2.7112 25 1 -0.5201 -11.7719 -4.8368 26 6 2.1704 -6.2391 -3.7161 27 6 2.5636 -5.5110 -2.4127 28 1 3.6220 -5.4396 -2.1621 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5144 -0.8898 31 1 -0.3633 -0.5135 0.8902 32 1 4.2354 1.3441 -0.7267 33 1 4.1163 0.8579 0.9924 34 1 3.8327 -0.8486 -1.5029 35 1 4.4755 -1.3005 0.1110 36 1 2.7127 -3.7995 -0.1737 37 1 0.2587 -7.7321 -1.5001 38 1 -0.2946 -6.3699 -2.5223 39 1 -1.3592 -9.8080 -2.6052 40 1 3.0615 -6.5544 -4.2589 41 1 1.5531 -5.5949 -4.3421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961581449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:05 Heat of formation + Delta-G solvation = -23.530421 kcal Electronic energy + Delta-G solvation = -23317.833649 eV Core-core repulsion = 19812.805511 eV Total energy + Delta-G solvation = -3505.028138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.99442 -40.75424 -39.64299 -37.30108 -36.10536 -34.47022 -33.65554 -32.17288 -29.43102 -28.91103 -27.64120 -27.48180 -24.19890 -23.15949 -21.96445 -21.74651 -20.87482 -20.45168 -18.88603 -18.65626 -17.99270 -17.40321 -17.04265 -16.71738 -16.26872 -15.99769 -15.53503 -15.16219 -14.84314 -14.79400 -14.63697 -14.57605 -13.77251 -13.69881 -13.48763 -13.34511 -13.26325 -13.04827 -12.87886 -12.81483 -12.74209 -12.09436 -12.03898 -12.00069 -11.87192 -11.65376 -11.21093 -10.95155 -10.85024 -10.68796 -9.84531 -9.65592 -8.92531 -7.92402 -5.29109 1.34379 1.44251 1.47699 1.48126 1.59213 1.76754 2.14138 2.48387 2.85207 3.24157 3.29903 3.38576 3.59021 3.69195 3.84229 3.94824 4.00922 4.07807 4.15249 4.31453 4.40283 4.41787 4.53764 4.60839 4.78085 4.85023 4.87094 4.92726 5.00151 5.00679 5.07222 5.29834 5.32613 5.42289 5.45266 5.54748 5.65259 6.00716 6.16664 6.49358 7.00244 7.03187 7.18657 7.67141 8.45071 9.21595 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.045836 B = 0.002797 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.726219 B =10009.556671 C =10309.509452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.607 5.607 3 C 0.504 3.496 4 O -0.585 6.585 5 C -0.141 4.141 6 C -0.111 4.111 7 C 0.117 3.883 8 H 0.149 0.851 9 C 0.508 3.492 10 O -0.573 6.573 11 N -0.672 5.672 12 C 0.117 3.883 13 H 0.099 0.901 14 C -0.177 4.177 15 H 0.133 0.867 16 C 0.186 3.814 17 N -0.617 5.617 18 C -0.240 4.240 19 H 0.083 0.917 20 C -0.063 4.063 21 N -0.948 5.948 22 Si 0.981 3.019 23 H -0.263 1.263 24 H -0.289 1.289 25 H -0.295 1.295 26 C 0.146 3.854 27 C -0.161 4.161 28 H 0.143 0.857 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.141 0.859 34 H 0.077 0.923 35 H 0.150 0.850 36 H 0.423 0.577 37 H 0.059 0.941 38 H -0.009 1.009 39 H 0.250 0.750 40 H 0.064 0.936 41 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.889 14.890 11.247 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.340 5.340 3 C 0.294 3.706 4 O -0.465 6.465 5 C -0.181 4.181 6 C -0.148 4.148 7 C 0.010 3.990 8 H 0.166 0.834 9 C 0.294 3.706 10 O -0.452 6.452 11 N -0.322 5.322 12 C 0.009 3.991 13 H 0.117 0.883 14 C -0.198 4.198 15 H 0.150 0.850 16 C 0.060 3.940 17 N -0.342 5.342 18 C -0.368 4.368 19 H 0.101 0.899 20 C -0.257 4.257 21 N -0.596 5.596 22 Si 0.809 3.191 23 H -0.187 1.187 24 H -0.215 1.215 25 H -0.222 1.222 26 C 0.020 3.980 27 C -0.182 4.182 28 H 0.160 0.840 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.158 0.842 34 H 0.096 0.904 35 H 0.168 0.832 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.009 0.991 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 11.929 15.500 10.596 22.245 hybrid contribution -0.798 -1.202 -0.354 1.486 sum 11.131 14.297 10.242 20.814 Atomic orbital electron populations 1.21691 0.78246 1.03068 1.02722 1.48062 1.06889 1.06796 1.72249 1.21811 0.91506 0.83476 0.73827 1.90696 1.80016 1.22848 1.52975 1.22419 0.90950 0.97516 1.07181 1.22751 0.93224 0.95167 1.03695 1.21968 0.92377 0.84364 1.00295 0.83381 1.21298 0.80536 0.83222 0.85522 1.90727 1.37331 1.79871 1.37237 1.45073 1.48813 1.05887 1.32462 1.21324 0.98686 0.84321 0.94724 0.88277 1.24317 1.02119 0.93754 0.99561 0.84969 1.20809 0.90383 0.93818 0.88960 1.45499 1.47729 1.05495 1.35427 1.19438 1.05021 0.86593 1.25788 0.89902 1.25759 0.95133 1.03073 1.01712 1.70096 1.08327 1.34439 1.46748 0.84982 0.77619 0.79369 0.77148 1.18741 1.21547 1.22184 1.21271 0.95012 0.87906 0.93802 1.24264 0.97293 1.01132 0.95530 0.83977 0.91060 0.92135 0.90179 0.86884 0.84152 0.90396 0.83206 0.73811 0.92269 0.99062 0.94117 0.91802 0.96804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.87 10.49 127.77 1.34 3.21 16 2 N -0.61 -12.15 3.00 -823.06 -2.47 -14.62 16 3 C 0.50 10.86 8.02 87.90 0.71 11.57 16 4 O -0.58 -18.24 17.35 -3.03 -0.05 -18.29 16 5 C -0.14 -1.34 6.86 30.59 0.21 -1.13 16 6 C -0.11 -0.73 6.68 31.65 0.21 -0.52 16 7 C 0.12 1.46 3.71 44.70 0.17 1.62 16 8 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 9 C 0.51 10.67 6.69 87.66 0.59 11.26 16 10 O -0.57 -18.46 14.05 -3.03 -0.04 -18.51 16 11 N -0.67 -12.40 5.56 -442.54 -2.46 -14.87 16 12 C 0.12 3.37 5.97 44.99 0.27 3.64 16 13 H 0.10 3.62 7.40 -2.39 -0.02 3.60 16 14 C -0.18 -5.87 7.05 -9.89 -0.07 -5.94 16 15 H 0.13 3.68 8.14 -2.38 -0.02 3.66 16 16 C 0.19 8.90 5.70 86.53 0.49 9.40 16 17 N -0.62 -31.21 3.38 -688.16 -2.33 -33.53 16 18 C -0.24 -13.19 10.35 84.03 0.87 -12.32 16 19 H 0.08 4.34 7.84 -2.91 -0.02 4.32 16 20 C -0.06 -3.53 5.40 84.86 0.46 -3.07 16 21 N -0.95 -56.44 10.86 21.65 0.24 -56.20 16 22 Si 0.98 44.67 29.56 68.60 2.03 46.69 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 26 C 0.15 5.85 7.04 86.53 0.61 6.46 16 27 C -0.16 -4.87 7.06 -9.89 -0.07 -4.94 16 28 H 0.14 3.30 8.14 -2.38 -0.02 3.28 16 29 H 0.07 1.69 7.53 -2.39 -0.02 1.67 16 30 H 0.06 1.63 6.19 -2.38 -0.01 1.61 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 0.79 7.90 -2.39 -0.02 0.77 16 35 H 0.15 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.42 4.14 8.83 -92.70 -0.82 3.32 16 37 H 0.06 3.19 6.51 -2.39 -0.02 3.17 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 40 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 41 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -82.02 338.06 0.92 -81.10 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.23 Total: 8.99 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 5.78 Total: 19.23 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -7.02 Total: -119.22 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.10 Total: -36.80 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -82.02 0.92 -81.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961581449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.571 kcal (2) G-P(sol) polarization free energy of solvation -82.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds