Wall clock time and date at job start Tue Mar 31 2020 03:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36599 * 126.57945 * 2 1 4 4 C 1.47522 * 125.77050 * 0.03477 * 3 2 1 5 5 O 1.21587 * 120.00179 * 359.72049 * 4 3 2 6 6 N 1.34777 * 120.00140 * 179.71491 * 4 3 2 7 7 C 1.46497 * 120.00376 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.46725 * 35.00314 * 7 6 4 9 9 C 1.52997 * 109.47188 * 275.00479 * 7 6 4 10 10 C 1.52992 * 109.47081 * 155.00022 * 7 6 4 11 11 C 1.53953 * 113.74647 * 278.74078 * 10 7 6 12 12 N 1.47803 * 86.03866 * 222.08719 * 11 10 7 13 13 C 1.36940 * 134.45480 * 204.64597 * 12 11 10 14 14 H 1.08004 * 120.00062 * 179.86839 * 13 12 11 15 15 C 1.38806 * 119.99897 * 359.86583 * 13 12 11 16 16 N 1.31618 * 120.00303 * 0.02562 * 15 13 12 17 17 Si 1.86812 * 119.99830 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47087 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46797 * 120.00021 * 17 15 13 20 20 H 1.48495 * 109.46799 * 239.99894 * 17 15 13 21 21 C 1.47580 * 91.05616 * 24.54814 * 12 11 10 22 22 N 1.34407 * 108.45639 * 179.77089 * 3 2 1 23 23 N 1.28756 * 109.52516 * 0.23022 * 22 3 2 24 24 N 1.34817 * 126.58495 * 180.16421 * 2 1 3 25 25 C 1.46508 * 126.58855 * 359.97085 * 24 2 1 26 26 H 1.09003 * 109.47365 * 90.00058 * 1 2 3 27 27 H 1.09005 * 109.47280 * 210.00034 * 1 2 3 28 28 H 1.09001 * 109.47483 * 330.00092 * 1 2 3 29 29 H 0.97006 * 119.99702 * 0.02562 * 6 4 3 30 30 H 1.09002 * 109.47153 * 299.99573 * 9 7 6 31 31 H 1.09001 * 109.46832 * 179.97438 * 9 7 6 32 32 H 1.09004 * 109.47261 * 59.99745 * 9 7 6 33 33 H 1.08997 * 112.94423 * 50.33745 * 10 7 6 34 34 H 1.08999 * 113.76379 * 336.35463 * 11 10 7 35 35 H 1.09004 * 113.76409 * 107.74717 * 11 10 7 36 36 H 0.96996 * 120.00162 * 180.02562 * 16 15 13 37 37 H 1.08999 * 113.77170 * 221.15419 * 21 12 11 38 38 H 1.09002 * 113.86789 * 89.76287 * 21 12 11 39 39 H 1.09003 * 109.46724 * 270.26812 * 25 24 2 40 40 H 1.08992 * 109.47200 * 30.26992 * 25 24 2 41 41 H 1.09000 * 109.46915 * 150.27694 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0007 5 8 0.6860 2.7628 -0.0037 6 7 2.7816 3.4988 0.0065 7 6 2.3374 4.8948 0.0066 8 1 1.4224 4.9849 0.5921 9 6 2.0695 5.3449 -1.4309 10 6 3.4258 5.7761 0.6226 11 6 3.4228 5.7800 2.1621 12 7 3.6535 7.2361 2.0568 13 6 4.2137 8.1801 2.8756 14 1 4.2656 9.2103 2.5555 15 6 4.7147 7.8129 4.1169 16 7 4.6518 6.5574 4.5068 17 14 5.4782 9.1008 5.2341 18 1 5.4268 10.4270 4.5681 19 1 4.7224 9.1590 6.5110 20 1 6.8917 8.7400 5.5115 21 6 3.0404 7.2638 0.7147 22 7 3.5984 0.6789 0.0051 23 7 3.6299 -0.6083 0.0034 24 7 2.3104 -1.0825 -0.0031 25 6 1.8863 -2.4849 -0.0065 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 3.7292 3.2913 0.0097 30 1 2.9845 5.2549 -2.0164 31 1 1.7386 6.3835 -1.4307 32 1 1.2941 4.7170 -1.8697 33 1 4.4096 5.6039 0.1861 34 1 2.4597 5.5183 2.6001 35 1 4.2555 5.2329 2.6043 36 1 5.0016 6.3008 5.3744 37 1 3.5682 7.8992 0.0035 38 1 1.9646 7.4390 0.7248 39 1 1.7770 -2.8339 1.0203 40 1 0.9315 -2.5744 -0.5243 41 1 2.6352 -3.0897 -0.5179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969433507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:37 Heat of formation + Delta-G solvation = 110.957717 kcal Electronic energy + Delta-G solvation = -23355.695007 eV Core-core repulsion = 19888.791463 eV Total energy + Delta-G solvation = -3466.903544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.36293 -39.48132 -37.91554 -35.20089 -34.65762 -32.48164 -32.12019 -30.48686 -28.13978 -27.68050 -27.44843 -24.87034 -24.08078 -23.32537 -21.62576 -20.82519 -20.23533 -19.15876 -17.73304 -16.72132 -16.58209 -16.13679 -15.81375 -14.84181 -14.72703 -14.39984 -14.36044 -13.79276 -13.66054 -13.62689 -13.34554 -13.27984 -12.93382 -12.80748 -12.37746 -12.05484 -12.04212 -11.58905 -11.27905 -11.26341 -11.22045 -10.86544 -10.66889 -10.38411 -10.28143 -9.99286 -9.72817 -9.67379 -9.33967 -9.26289 -8.73934 -8.68536 -6.80386 -5.70001 -3.02240 0.97985 1.70059 1.84579 3.32678 3.41822 3.43199 3.48045 3.50891 4.06257 4.11714 4.43026 4.50695 4.59843 4.65105 4.86288 5.07022 5.17607 5.21810 5.35076 5.37138 5.44527 5.58461 5.61685 5.72787 5.79157 5.90027 6.04039 6.10950 6.21673 6.31398 6.42960 6.48052 6.66088 6.73894 6.88303 7.31992 7.44816 7.64406 7.65881 7.93050 8.04980 8.38552 9.11152 9.77517 10.67348 11.47019 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.022248 B = 0.003347 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.242076 B = 8364.693305 C = 9086.934527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.120 3.880 3 C -0.101 4.101 4 C 0.605 3.395 5 O -0.543 6.543 6 N -0.700 5.700 7 C 0.151 3.849 8 H 0.089 0.911 9 C -0.158 4.158 10 C -0.147 4.147 11 C 0.170 3.830 12 N -0.613 5.613 13 C -0.221 4.221 14 H 0.080 0.920 15 C -0.009 4.009 16 N -0.920 5.920 17 Si 0.911 3.089 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.131 3.869 22 N -0.199 5.199 23 N -0.070 5.070 24 N -0.368 5.368 25 C 0.088 3.912 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.407 0.593 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.026 0.974 35 H 0.072 0.928 36 H 0.252 0.748 37 H 0.044 0.956 38 H 0.035 0.965 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.613 -17.911 -12.595 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.017 4.017 3 C -0.241 4.241 4 C 0.389 3.611 5 O -0.420 6.420 6 N -0.349 5.349 7 C 0.047 3.953 8 H 0.107 0.893 9 C -0.216 4.216 10 C -0.167 4.167 11 C 0.045 3.955 12 N -0.339 5.339 13 C -0.349 4.349 14 H 0.098 0.902 15 C -0.206 4.206 16 N -0.568 5.568 17 Si 0.741 3.259 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.217 1.217 21 C 0.004 3.996 22 N -0.072 5.072 23 N -0.050 5.050 24 N -0.154 5.154 25 C -0.053 4.053 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.243 0.757 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.803 -18.003 -12.294 23.154 hybrid contribution -0.116 0.497 0.795 0.945 sum -7.919 -17.506 -11.498 22.391 Atomic orbital electron populations 1.20712 0.84664 1.05499 1.04498 1.21923 0.96226 0.86347 0.97246 1.21326 0.88924 0.95692 1.18147 1.16685 0.85694 0.82398 0.76336 1.90737 1.15922 1.83579 1.51812 1.45894 1.10110 1.05941 1.72979 1.21143 0.98923 0.78735 0.96533 0.89266 1.22135 1.01461 1.01647 0.96401 1.23827 0.97464 0.95627 0.99782 1.22299 0.98878 0.85830 0.88471 1.45999 1.67103 1.05353 1.15483 1.19067 1.30443 0.89091 0.96310 0.90247 1.24785 1.01722 0.96524 0.97534 1.69833 1.51073 1.15071 1.20775 0.86064 0.78660 0.80457 0.80703 1.20491 1.21816 1.21738 1.22486 0.95984 0.92391 0.88704 1.74618 1.19129 1.04041 1.09432 1.81995 0.95884 1.03546 1.23555 1.50278 1.06558 1.07696 1.50898 1.22137 1.02323 0.76199 1.04662 0.89151 0.90796 0.86750 0.75735 0.92671 0.91350 0.92744 0.89285 0.95616 0.90990 0.93759 0.93781 0.94751 0.89326 0.88619 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 9.38 36.00 0.34 -0.41 16 2 C 0.12 1.35 7.02 -81.88 -0.57 0.78 16 3 C -0.10 -1.45 6.99 -83.55 -0.58 -2.04 16 4 C 0.60 9.49 7.78 -12.48 -0.10 9.39 16 5 O -0.54 -9.20 14.38 5.29 0.08 -9.12 16 6 N -0.70 -10.80 5.07 -54.86 -0.28 -11.08 16 7 C 0.15 2.43 2.38 -67.94 -0.16 2.26 16 8 H 0.09 1.59 7.41 -51.93 -0.39 1.21 16 9 C -0.16 -2.16 9.31 37.16 0.35 -1.81 16 10 C -0.15 -2.74 3.47 -89.69 -0.31 -3.06 16 11 C 0.17 4.11 7.08 -2.84 -0.02 4.09 16 12 N -0.61 -16.11 3.70 -177.68 -0.66 -16.77 16 13 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 14 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 15 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 16 N -0.92 -28.03 11.39 55.49 0.63 -27.40 16 17 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 C 0.13 2.68 7.64 -2.96 -0.02 2.66 16 22 N -0.20 -3.02 12.04 32.85 0.40 -2.62 16 23 N -0.07 -0.96 13.78 60.35 0.83 -0.13 16 24 N -0.37 -3.72 4.03 -63.59 -0.26 -3.98 16 25 C 0.09 0.38 11.17 59.85 0.67 1.05 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.36 7.84 -51.93 -0.41 -0.05 16 28 H 0.11 1.15 6.43 -51.93 -0.33 0.82 16 29 H 0.41 6.04 8.29 -40.82 -0.34 5.70 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.88 7.52 -51.93 -0.39 0.49 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 35 H 0.07 1.93 7.16 -51.93 -0.37 1.56 16 36 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 0.17 7.78 -51.93 -0.40 -0.23 16 41 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 345.35 15.07 5.20 5.20 Total: -1.00 -35.51 345.35 -5.72 -41.23 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.97 Total: 1.03 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -0.68 Total: 6.02 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: 0.67 Total: -61.98 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.51 -5.72 -41.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969433507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.189 kcal (2) G-P(sol) polarization free energy of solvation -35.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds