Wall clock time and date at job start Tue Mar 31 2020 03:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36599 * 126.57945 * 2 1 4 4 C 1.47522 * 125.77050 * 0.03477 * 3 2 1 5 5 O 1.21587 * 120.00179 * 359.72049 * 4 3 2 6 6 N 1.34777 * 120.00140 * 179.71491 * 4 3 2 7 7 C 1.46497 * 120.00376 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.46725 * 35.00314 * 7 6 4 9 9 C 1.52997 * 109.47188 * 275.00479 * 7 6 4 10 10 C 1.52992 * 109.47081 * 155.00022 * 7 6 4 11 11 C 1.53953 * 113.74647 * 278.74078 * 10 7 6 12 12 N 1.47803 * 86.03866 * 222.08719 * 11 10 7 13 13 C 1.36940 * 134.45480 * 204.64597 * 12 11 10 14 14 H 1.08004 * 120.00062 * 179.86839 * 13 12 11 15 15 C 1.38806 * 119.99897 * 359.86583 * 13 12 11 16 16 N 1.31618 * 120.00303 * 0.02562 * 15 13 12 17 17 Si 1.86812 * 119.99830 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47087 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46797 * 120.00021 * 17 15 13 20 20 H 1.48495 * 109.46799 * 239.99894 * 17 15 13 21 21 C 1.47580 * 91.05616 * 24.54814 * 12 11 10 22 22 N 1.34407 * 108.45639 * 179.77089 * 3 2 1 23 23 N 1.28756 * 109.52516 * 0.23022 * 22 3 2 24 24 N 1.34817 * 126.58495 * 180.16421 * 2 1 3 25 25 C 1.46508 * 126.58855 * 359.97085 * 24 2 1 26 26 H 1.09003 * 109.47365 * 90.00058 * 1 2 3 27 27 H 1.09005 * 109.47280 * 210.00034 * 1 2 3 28 28 H 1.09001 * 109.47483 * 330.00092 * 1 2 3 29 29 H 0.97006 * 119.99702 * 0.02562 * 6 4 3 30 30 H 1.09002 * 109.47153 * 299.99573 * 9 7 6 31 31 H 1.09001 * 109.46832 * 179.97438 * 9 7 6 32 32 H 1.09004 * 109.47261 * 59.99745 * 9 7 6 33 33 H 1.08997 * 112.94423 * 50.33745 * 10 7 6 34 34 H 1.08999 * 113.76379 * 336.35463 * 11 10 7 35 35 H 1.09004 * 113.76409 * 107.74717 * 11 10 7 36 36 H 0.96996 * 120.00162 * 180.02562 * 16 15 13 37 37 H 1.08999 * 113.77170 * 221.15419 * 21 12 11 38 38 H 1.09002 * 113.86789 * 89.76287 * 21 12 11 39 39 H 1.09003 * 109.46724 * 270.26812 * 25 24 2 40 40 H 1.08992 * 109.47200 * 30.26992 * 25 24 2 41 41 H 1.09000 * 109.46915 * 150.27694 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0007 5 8 0.6860 2.7628 -0.0037 6 7 2.7816 3.4988 0.0065 7 6 2.3374 4.8948 0.0066 8 1 1.4224 4.9849 0.5921 9 6 2.0695 5.3449 -1.4309 10 6 3.4258 5.7761 0.6226 11 6 3.4228 5.7800 2.1621 12 7 3.6535 7.2361 2.0568 13 6 4.2137 8.1801 2.8756 14 1 4.2656 9.2103 2.5555 15 6 4.7147 7.8129 4.1169 16 7 4.6518 6.5574 4.5068 17 14 5.4782 9.1008 5.2341 18 1 5.4268 10.4270 4.5681 19 1 4.7224 9.1590 6.5110 20 1 6.8917 8.7400 5.5115 21 6 3.0404 7.2638 0.7147 22 7 3.5984 0.6789 0.0051 23 7 3.6299 -0.6083 0.0034 24 7 2.3104 -1.0825 -0.0031 25 6 1.8863 -2.4849 -0.0065 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 3.7292 3.2913 0.0097 30 1 2.9845 5.2549 -2.0164 31 1 1.7386 6.3835 -1.4307 32 1 1.2941 4.7170 -1.8697 33 1 4.4096 5.6039 0.1861 34 1 2.4597 5.5183 2.6001 35 1 4.2555 5.2329 2.6043 36 1 5.0016 6.3008 5.3744 37 1 3.5682 7.8992 0.0035 38 1 1.9646 7.4390 0.7248 39 1 1.7770 -2.8339 1.0203 40 1 0.9315 -2.5744 -0.5243 41 1 2.6352 -3.0897 -0.5179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969433507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:37 Heat of formation + Delta-G solvation = 84.304745 kcal Electronic energy + Delta-G solvation = -23356.850766 eV Core-core repulsion = 19888.791463 eV Total energy + Delta-G solvation = -3468.059303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.28742 -40.82473 -39.52761 -36.28568 -35.80412 -34.15003 -33.32224 -31.81219 -29.39106 -28.92279 -28.30940 -26.59672 -25.68194 -24.66035 -22.91373 -21.85386 -21.45310 -20.69882 -18.90179 -18.69583 -17.48202 -17.34832 -16.94394 -16.75785 -15.89475 -15.74164 -15.55847 -15.23088 -14.84096 -14.65793 -14.22985 -14.15854 -14.00703 -13.93231 -13.39556 -13.30927 -13.23459 -13.06830 -12.95794 -12.89628 -12.68364 -12.50149 -12.17307 -11.95370 -11.73406 -11.46856 -11.26095 -11.13368 -11.00704 -10.86442 -10.29169 -9.92359 -8.90947 -7.89370 -5.23280 0.12007 0.61310 1.15245 1.44932 1.46585 1.56910 2.15067 2.27085 2.47919 3.19167 3.31398 3.38607 3.47357 3.64689 3.72631 3.82544 3.96993 4.32916 4.34283 4.42438 4.52055 4.61148 4.63253 4.66784 4.70155 4.76681 4.83066 4.85282 4.89339 5.04178 5.07361 5.15217 5.27388 5.37713 5.47589 5.53893 5.58851 5.68392 5.94450 6.47400 6.90519 6.92163 7.17963 7.61921 8.58024 9.27698 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.022248 B = 0.003347 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.242076 B = 8364.693305 C = 9086.934527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.131 3.869 3 C -0.133 4.133 4 C 0.604 3.396 5 O -0.560 6.560 6 N -0.702 5.702 7 C 0.161 3.839 8 H 0.070 0.930 9 C -0.149 4.149 10 C -0.113 4.113 11 C 0.167 3.833 12 N -0.645 5.645 13 C -0.233 4.233 14 H 0.087 0.913 15 C -0.072 4.072 16 N -0.956 5.956 17 Si 0.980 3.020 18 H -0.262 1.262 19 H -0.294 1.294 20 H -0.292 1.292 21 C 0.134 3.866 22 N -0.227 5.227 23 N -0.096 5.096 24 N -0.354 5.354 25 C 0.072 3.928 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.409 0.591 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.007 0.993 35 H 0.036 0.964 36 H 0.247 0.753 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.106 0.894 40 H 0.130 0.870 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.646 -18.629 -14.131 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.008 4.008 3 C -0.274 4.274 4 C 0.389 3.611 5 O -0.439 6.439 6 N -0.352 5.352 7 C 0.056 3.944 8 H 0.088 0.912 9 C -0.207 4.207 10 C -0.133 4.133 11 C 0.041 3.959 12 N -0.372 5.372 13 C -0.361 4.361 14 H 0.105 0.895 15 C -0.265 4.265 16 N -0.605 5.605 17 Si 0.808 3.192 18 H -0.186 1.186 19 H -0.221 1.221 20 H -0.219 1.219 21 C 0.009 3.991 22 N -0.099 5.099 23 N -0.075 5.075 24 N -0.140 5.140 25 C -0.066 4.066 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.110 0.890 29 H 0.245 0.755 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.025 0.975 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.124 0.876 40 H 0.148 0.852 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.836 -18.741 -13.873 24.936 hybrid contribution 0.120 0.601 1.253 1.394 sum -8.716 -18.141 -12.621 23.756 Atomic orbital electron populations 1.20827 0.82097 1.06213 1.05847 1.22374 0.97514 0.85717 0.95209 1.21337 0.89589 0.95757 1.20688 1.16878 0.85411 0.83046 0.75738 1.90717 1.16429 1.84040 1.52690 1.45874 1.10323 1.05762 1.73197 1.20933 0.96768 0.78835 0.97877 0.91150 1.22052 1.02228 1.02185 0.94205 1.23455 0.98844 0.95369 0.95585 1.22168 0.96380 0.85017 0.92289 1.46430 1.67662 1.05746 1.17332 1.19514 1.29788 0.89992 0.96798 0.89543 1.25682 1.02963 0.98552 0.99286 1.70044 1.52556 1.17088 1.20836 0.84982 0.77214 0.78647 0.78329 1.18640 1.22138 1.21875 1.22676 0.96601 0.93618 0.86237 1.74573 1.19965 1.04927 1.10473 1.81873 0.98056 1.03085 1.24504 1.50627 1.05187 1.09407 1.48773 1.22723 1.04260 0.73127 1.06539 0.87265 0.87030 0.89004 0.75499 0.91319 0.90202 0.92581 0.88380 0.97539 0.94543 0.94451 0.91662 0.93277 0.87574 0.85206 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 9.38 71.23 0.67 -0.55 16 2 C 0.13 2.76 7.02 41.71 0.29 3.06 16 3 C -0.13 -3.84 6.99 40.82 0.29 -3.56 16 4 C 0.60 19.16 7.78 86.69 0.67 19.84 16 5 O -0.56 -19.03 14.38 -3.99 -0.06 -19.09 16 6 N -0.70 -21.93 5.07 -445.74 -2.26 -24.19 16 7 C 0.16 5.09 2.38 44.99 0.11 5.20 16 8 H 0.07 2.53 7.41 -2.39 -0.02 2.52 16 9 C -0.15 -3.76 9.31 71.98 0.67 -3.09 16 10 C -0.11 -4.18 3.47 -10.13 -0.04 -4.22 16 11 C 0.17 8.36 7.08 86.45 0.61 8.98 16 12 N -0.65 -34.25 3.70 -716.07 -2.65 -36.90 16 13 C -0.23 -13.46 10.70 84.03 0.90 -12.56 16 14 H 0.09 4.74 7.83 -2.91 -0.02 4.71 16 15 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 16 N -0.96 -60.26 11.39 21.65 0.25 -60.01 16 17 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 20 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 21 C 0.13 5.32 7.64 86.49 0.66 5.98 16 22 N -0.23 -7.00 12.04 -49.99 -0.60 -7.60 16 23 N -0.10 -2.59 13.78 37.02 0.51 -2.08 16 24 N -0.35 -6.51 4.03 -355.09 -1.43 -7.94 16 25 C 0.07 0.39 11.17 127.77 1.43 1.82 16 26 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.11 0.63 7.84 -2.38 -0.02 0.61 16 28 H 0.09 1.75 6.43 -2.39 -0.02 1.73 16 29 H 0.41 12.44 8.29 -92.70 -0.77 11.67 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.84 7.52 -2.39 -0.02 1.83 16 32 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 34 H 0.01 0.36 7.99 -2.39 -0.02 0.34 16 35 H 0.04 2.06 7.16 -2.38 -0.02 2.04 16 36 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 39 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.13 -0.13 7.78 -2.39 -0.02 -0.15 16 41 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -80.12 345.35 2.79 -77.34 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.28 Total: 14.17 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 6.73 Total: 17.09 kcal Atomic # 7 Polarization: -132.53 SS G_CDS: -6.19 Total: -138.72 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.06 Total: -19.09 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -80.12 2.79 -77.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969433507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.641 kcal (2) G-P(sol) polarization free energy of solvation -80.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds