Wall clock time and date at job start Tue Mar 31 2020 03:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36598 * 126.57844 * 2 1 4 4 C 1.47522 * 125.77190 * 0.04270 * 3 2 1 5 5 O 1.21592 * 120.00109 * 359.71107 * 4 3 2 6 6 N 1.34780 * 119.99987 * 179.71709 * 4 3 2 7 7 C 1.46496 * 119.99734 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47552 * 324.99740 * 7 6 4 9 9 C 1.53008 * 109.47421 * 84.99427 * 7 6 4 10 10 C 1.52998 * 109.46930 * 204.99506 * 7 6 4 11 11 C 1.53504 * 114.20785 * 179.97438 * 10 7 6 12 12 N 1.47069 * 87.98363 * 220.34571 * 11 10 7 13 13 C 1.36941 * 136.05552 * 207.07801 * 12 11 10 14 14 H 1.08000 * 119.99396 * 7.56018 * 13 12 11 15 15 C 1.38806 * 119.99993 * 187.55101 * 13 12 11 16 16 N 1.31621 * 119.99759 * 174.37714 * 15 13 12 17 17 Si 1.86799 * 119.99972 * 354.38427 * 15 13 12 18 18 H 1.48501 * 109.46963 * 174.94900 * 17 15 13 19 19 H 1.48498 * 109.47184 * 294.94894 * 17 15 13 20 20 H 1.48507 * 109.47082 * 54.95224 * 17 15 13 21 21 C 1.47064 * 87.88742 * 27.34488 * 12 11 10 22 22 N 1.34402 * 108.45711 * 179.77435 * 3 2 1 23 23 N 1.28756 * 109.52272 * 0.22744 * 22 3 2 24 24 N 1.34812 * 126.58517 * 180.16895 * 2 1 3 25 25 C 1.46505 * 126.59018 * 359.97438 * 24 2 1 26 26 H 1.09007 * 109.46945 * 90.00213 * 1 2 3 27 27 H 1.09000 * 109.47280 * 209.99763 * 1 2 3 28 28 H 1.08999 * 109.47490 * 330.00087 * 1 2 3 29 29 H 0.96996 * 120.00127 * 359.97438 * 6 4 3 30 30 H 1.09004 * 109.46240 * 60.00200 * 9 7 6 31 31 H 1.08998 * 109.47419 * 179.97438 * 9 7 6 32 32 H 1.08994 * 109.46942 * 300.00242 * 9 7 6 33 33 H 1.09002 * 113.41395 * 313.19707 * 10 7 6 34 34 H 1.08997 * 113.46758 * 105.56146 * 11 10 7 35 35 H 1.09000 * 113.51898 * 335.13170 * 11 10 7 36 36 H 0.96993 * 120.00423 * 354.88754 * 16 15 13 37 37 H 1.08993 * 113.47012 * 87.43421 * 21 12 11 38 38 H 1.09000 * 113.46758 * 217.87997 * 21 12 11 39 39 H 1.09004 * 109.46939 * 270.24769 * 25 24 2 40 40 H 1.09004 * 109.47300 * 30.24109 * 25 24 2 41 41 H 1.08998 * 109.47048 * 150.24256 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0009 5 8 0.6860 2.7628 -0.0036 6 7 2.7817 3.4988 0.0066 7 6 2.3374 4.8948 0.0069 8 1 1.4278 4.9868 -0.5865 9 6 2.0564 5.3403 1.4434 10 6 3.4313 5.7781 -0.5963 11 6 3.0770 7.2708 -0.6496 12 7 3.7043 7.3190 -1.9789 13 6 4.3220 8.2724 -2.7437 14 1 4.5380 9.2441 -2.3247 15 6 4.6707 7.9897 -4.0571 16 7 5.1627 8.9380 -4.8260 17 14 4.4414 6.2637 -4.7336 18 1 4.7701 6.2519 -6.1818 19 1 5.3411 5.3265 -4.0142 20 1 3.0308 5.8406 -4.5428 21 6 3.3702 5.8947 -2.1283 22 7 3.5984 0.6789 0.0050 23 7 3.6299 -0.6083 0.0033 24 7 2.3105 -1.0825 -0.0032 25 6 1.8864 -2.4848 -0.0068 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 3.7292 3.2913 0.0104 30 1 2.9662 5.2484 2.0367 31 1 1.7264 6.3791 1.4437 32 1 1.2772 4.7110 1.8731 33 1 4.4250 5.5683 -0.2004 34 1 3.5985 7.8677 0.0985 35 1 2.0042 7.4627 -0.6687 36 1 5.2128 9.8500 -4.4995 37 1 2.3745 5.7229 -2.5372 38 1 4.1416 5.3192 -2.6400 39 1 1.7774 -2.8341 1.0200 40 1 0.9312 -2.5743 -0.5243 41 1 2.6350 -3.0894 -0.5187 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969433508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:41 Heat of formation + Delta-G solvation = 119.019978 kcal Electronic energy + Delta-G solvation = -23476.855747 eV Core-core repulsion = 20010.301810 eV Total energy + Delta-G solvation = -3466.553938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.48257 -39.74349 -38.42122 -35.34213 -34.89532 -32.60267 -32.36660 -30.78522 -28.28533 -27.78545 -27.68524 -25.38253 -24.22839 -23.23658 -21.59444 -20.81600 -20.41385 -19.43503 -17.96929 -17.42513 -16.70350 -16.37249 -16.02842 -15.25804 -14.88817 -14.59524 -14.46627 -13.91552 -13.85167 -13.68199 -13.52580 -13.36007 -13.11112 -12.96283 -12.86204 -12.25008 -12.16105 -11.84721 -11.77459 -11.45783 -11.39595 -10.88818 -10.60897 -10.49507 -10.29774 -10.25275 -9.95269 -9.40232 -9.17989 -9.08579 -8.85763 -8.83261 -7.11338 -6.25020 -3.18721 0.86895 1.56714 1.73934 3.16348 3.25876 3.46995 3.49838 3.69613 3.94861 4.02358 4.30953 4.51056 4.51525 4.64445 4.75371 4.78756 4.94557 5.00760 5.12296 5.15594 5.34654 5.46967 5.49637 5.53320 5.61186 5.70685 5.81866 5.93105 6.06040 6.10644 6.21555 6.28888 6.32737 6.37005 6.44939 6.64279 6.97447 7.17521 7.49316 7.79108 8.21728 8.27972 9.02172 9.54721 10.41793 11.25065 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021017 B = 0.003789 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.941793 B = 7388.119767 C = 8139.375388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.122 3.878 3 C -0.104 4.104 4 C 0.606 3.394 5 O -0.540 6.540 6 N -0.704 5.704 7 C 0.153 3.847 8 H 0.092 0.908 9 C -0.158 4.158 10 C -0.140 4.140 11 C 0.135 3.865 12 N -0.630 5.630 13 C -0.302 4.302 14 H 0.083 0.917 15 C -0.025 4.025 16 N -0.936 5.936 17 Si 1.069 2.931 18 H -0.295 1.295 19 H -0.292 1.292 20 H -0.287 1.287 21 C 0.102 3.898 22 N -0.200 5.200 23 N -0.069 5.069 24 N -0.367 5.367 25 C 0.088 3.912 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.113 0.887 29 H 0.408 0.592 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.260 0.740 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.490 -23.529 13.797 29.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.016 4.016 3 C -0.243 4.243 4 C 0.390 3.610 5 O -0.417 6.417 6 N -0.354 5.354 7 C 0.048 3.952 8 H 0.110 0.890 9 C -0.216 4.216 10 C -0.160 4.160 11 C 0.008 3.992 12 N -0.357 5.357 13 C -0.429 4.429 14 H 0.101 0.899 15 C -0.224 4.224 16 N -0.578 5.578 17 Si 0.902 3.098 18 H -0.223 1.223 19 H -0.220 1.220 20 H -0.214 1.214 21 C -0.023 4.023 22 N -0.074 5.074 23 N -0.048 5.048 24 N -0.153 5.153 25 C -0.054 4.054 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.243 0.757 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.458 -24.487 12.295 28.987 hybrid contribution -0.751 0.855 1.301 1.729 sum -10.210 -23.632 13.596 29.113 Atomic orbital electron populations 1.20723 0.84596 1.05366 1.04746 1.21936 0.96260 0.86331 0.97060 1.21289 0.88981 0.95611 1.18468 1.16690 0.85668 0.82410 0.76262 1.90750 1.15866 1.83574 1.51554 1.45917 1.10183 1.05897 1.73378 1.21072 0.98436 0.78652 0.97044 0.88988 1.22124 1.01679 1.01842 0.95990 1.23570 0.98377 0.96485 0.97566 1.22254 0.96292 0.91562 0.89088 1.45964 1.65715 1.06776 1.17287 1.20157 1.34695 0.94077 0.93935 0.89940 1.25703 0.98892 1.06092 0.91675 1.70914 1.48002 1.01537 1.37332 0.83729 0.76155 0.74716 0.75216 1.22284 1.22048 1.21419 1.22837 0.98624 0.87531 0.93312 1.74613 1.19097 1.04121 1.09525 1.82003 0.95914 1.03475 1.23451 1.50283 1.06520 1.07755 1.50758 1.22156 1.02486 0.76106 1.04618 0.88946 0.90766 0.86833 0.75696 0.92483 0.91162 0.92484 0.88265 0.93508 0.94280 0.92974 0.93729 0.93028 0.89328 0.88530 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 9.38 36.01 0.34 -0.33 16 2 C 0.12 1.24 7.02 -81.88 -0.57 0.67 16 3 C -0.10 -1.37 6.99 -83.55 -0.58 -1.95 16 4 C 0.61 8.68 7.78 -12.47 -0.10 8.58 16 5 O -0.54 -8.44 14.38 5.28 0.08 -8.36 16 6 N -0.70 -9.83 5.07 -54.85 -0.28 -10.11 16 7 C 0.15 2.22 2.47 -67.93 -0.17 2.05 16 8 H 0.09 1.47 7.32 -51.93 -0.38 1.09 16 9 C -0.16 -1.97 9.29 37.16 0.35 -1.62 16 10 C -0.14 -2.40 3.67 -89.96 -0.33 -2.73 16 11 C 0.14 2.64 7.33 -8.50 -0.06 2.58 16 12 N -0.63 -15.85 3.69 -184.57 -0.68 -16.53 16 13 C -0.30 -8.95 11.08 -15.06 -0.17 -9.11 16 14 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 15 C -0.03 -0.77 5.50 -17.43 -0.10 -0.86 16 16 N -0.94 -30.24 13.70 55.49 0.76 -29.48 16 17 Si 1.07 27.86 25.16 -169.99 -4.28 23.58 16 18 H -0.30 -7.79 7.11 56.52 0.40 -7.38 16 19 H -0.29 -7.23 6.51 56.52 0.37 -6.87 16 20 H -0.29 -7.06 6.21 56.52 0.35 -6.71 16 21 C 0.10 2.23 5.27 -8.36 -0.04 2.18 16 22 N -0.20 -2.81 12.04 32.85 0.40 -2.41 16 23 N -0.07 -0.87 13.78 60.35 0.83 -0.04 16 24 N -0.37 -3.37 4.03 -63.58 -0.26 -3.62 16 25 C 0.09 0.31 11.18 59.85 0.67 0.98 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.28 7.84 -51.93 -0.41 -0.13 16 28 H 0.11 0.99 6.43 -51.93 -0.33 0.65 16 29 H 0.41 5.38 8.29 -40.82 -0.34 5.04 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.26 8.28 8.73 -40.82 -0.36 7.92 16 37 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16 38 H 0.05 1.17 4.73 -51.93 -0.25 0.93 16 39 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.10 0.12 7.78 -51.93 -0.40 -0.28 16 41 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 337.84 15.07 5.09 5.09 Total: -1.00 -36.72 337.84 -5.03 -41.76 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.92 Total: -0.31 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.77 Total: 0.44 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 0.77 Total: -62.19 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.08 Total: -8.36 kcal Atomic # 14 Polarization: 27.86 SS G_CDS: -4.28 Total: 23.58 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.72 -5.03 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969433508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.775 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds