Wall clock time and date at job start Tue Mar 31 2020 03:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36598 * 126.57844 * 2 1 4 4 C 1.47522 * 125.77190 * 0.04270 * 3 2 1 5 5 O 1.21592 * 120.00109 * 359.71107 * 4 3 2 6 6 N 1.34780 * 119.99987 * 179.71709 * 4 3 2 7 7 C 1.46496 * 119.99734 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47552 * 324.99740 * 7 6 4 9 9 C 1.53008 * 109.47421 * 84.99427 * 7 6 4 10 10 C 1.52998 * 109.46930 * 204.99506 * 7 6 4 11 11 C 1.53504 * 114.20785 * 179.97438 * 10 7 6 12 12 N 1.47069 * 87.98363 * 220.34571 * 11 10 7 13 13 C 1.36941 * 136.05552 * 207.07801 * 12 11 10 14 14 H 1.08000 * 119.99396 * 7.56018 * 13 12 11 15 15 C 1.38806 * 119.99993 * 187.55101 * 13 12 11 16 16 N 1.31621 * 119.99759 * 174.37714 * 15 13 12 17 17 Si 1.86799 * 119.99972 * 354.38427 * 15 13 12 18 18 H 1.48501 * 109.46963 * 174.94900 * 17 15 13 19 19 H 1.48498 * 109.47184 * 294.94894 * 17 15 13 20 20 H 1.48507 * 109.47082 * 54.95224 * 17 15 13 21 21 C 1.47064 * 87.88742 * 27.34488 * 12 11 10 22 22 N 1.34402 * 108.45711 * 179.77435 * 3 2 1 23 23 N 1.28756 * 109.52272 * 0.22744 * 22 3 2 24 24 N 1.34812 * 126.58517 * 180.16895 * 2 1 3 25 25 C 1.46505 * 126.59018 * 359.97438 * 24 2 1 26 26 H 1.09007 * 109.46945 * 90.00213 * 1 2 3 27 27 H 1.09000 * 109.47280 * 209.99763 * 1 2 3 28 28 H 1.08999 * 109.47490 * 330.00087 * 1 2 3 29 29 H 0.96996 * 120.00127 * 359.97438 * 6 4 3 30 30 H 1.09004 * 109.46240 * 60.00200 * 9 7 6 31 31 H 1.08998 * 109.47419 * 179.97438 * 9 7 6 32 32 H 1.08994 * 109.46942 * 300.00242 * 9 7 6 33 33 H 1.09002 * 113.41395 * 313.19707 * 10 7 6 34 34 H 1.08997 * 113.46758 * 105.56146 * 11 10 7 35 35 H 1.09000 * 113.51898 * 335.13170 * 11 10 7 36 36 H 0.96993 * 120.00423 * 354.88754 * 16 15 13 37 37 H 1.08993 * 113.47012 * 87.43421 * 21 12 11 38 38 H 1.09000 * 113.46758 * 217.87997 * 21 12 11 39 39 H 1.09004 * 109.46939 * 270.24769 * 25 24 2 40 40 H 1.09004 * 109.47300 * 30.24109 * 25 24 2 41 41 H 1.08998 * 109.47048 * 150.24256 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0009 5 8 0.6860 2.7628 -0.0036 6 7 2.7817 3.4988 0.0066 7 6 2.3374 4.8948 0.0069 8 1 1.4278 4.9868 -0.5865 9 6 2.0564 5.3403 1.4434 10 6 3.4313 5.7781 -0.5963 11 6 3.0770 7.2708 -0.6496 12 7 3.7043 7.3190 -1.9789 13 6 4.3220 8.2724 -2.7437 14 1 4.5380 9.2441 -2.3247 15 6 4.6707 7.9897 -4.0571 16 7 5.1627 8.9380 -4.8260 17 14 4.4414 6.2637 -4.7336 18 1 4.7701 6.2519 -6.1818 19 1 5.3411 5.3265 -4.0142 20 1 3.0308 5.8406 -4.5428 21 6 3.3702 5.8947 -2.1283 22 7 3.5984 0.6789 0.0050 23 7 3.6299 -0.6083 0.0033 24 7 2.3105 -1.0825 -0.0032 25 6 1.8864 -2.4848 -0.0068 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 3.7292 3.2913 0.0104 30 1 2.9662 5.2484 2.0367 31 1 1.7264 6.3791 1.4437 32 1 1.2772 4.7110 1.8731 33 1 4.4250 5.5683 -0.2004 34 1 3.5985 7.8677 0.0985 35 1 2.0042 7.4627 -0.6687 36 1 5.2128 9.8500 -4.4995 37 1 2.3745 5.7229 -2.5372 38 1 4.1416 5.3192 -2.6400 39 1 1.7774 -2.8341 1.0200 40 1 0.9312 -2.5743 -0.5243 41 1 2.6350 -3.0894 -0.5187 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969433508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:39 Heat of formation + Delta-G solvation = 89.868626 kcal Electronic energy + Delta-G solvation = -23478.119845 eV Core-core repulsion = 20010.301810 eV Total energy + Delta-G solvation = -3467.818035 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.29486 -41.03272 -39.85097 -36.39172 -35.83603 -34.51797 -33.33975 -32.00903 -29.56568 -28.93015 -28.31337 -27.02854 -25.55251 -24.52454 -22.79635 -21.85592 -21.50300 -20.93449 -19.55634 -18.96014 -17.58191 -17.41104 -17.18271 -16.74105 -15.99526 -15.90024 -15.62350 -15.24272 -15.16210 -14.91954 -14.42108 -14.18847 -14.08529 -13.94288 -13.65476 -13.34126 -13.25459 -13.21256 -13.09223 -12.94988 -12.50427 -12.37057 -12.17948 -12.12078 -11.69693 -11.33291 -11.14217 -11.10209 -11.04661 -10.84580 -10.30362 -9.96342 -9.23193 -8.62452 -5.48322 0.11745 0.60355 1.14492 1.36382 1.44747 1.63851 2.11744 2.24400 2.50788 2.98434 3.16383 3.18878 3.41001 3.53658 3.64231 3.76820 3.87321 4.21869 4.34293 4.37921 4.42474 4.48149 4.59136 4.62522 4.66774 4.67236 4.69304 4.70477 4.81458 4.84360 4.89177 5.04072 5.11519 5.20246 5.32915 5.41660 5.51490 5.58020 5.94379 6.44793 6.69310 6.89693 7.15940 7.31698 8.27147 8.89416 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021017 B = 0.003789 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.941793 B = 7388.119767 C = 8139.375388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.132 3.868 3 C -0.134 4.134 4 C 0.606 3.394 5 O -0.557 6.557 6 N -0.704 5.704 7 C 0.162 3.838 8 H 0.080 0.920 9 C -0.151 4.151 10 C -0.107 4.107 11 C 0.134 3.866 12 N -0.663 5.663 13 C -0.288 4.288 14 H 0.055 0.945 15 C -0.085 4.085 16 N -0.972 5.972 17 Si 1.107 2.893 18 H -0.303 1.303 19 H -0.274 1.274 20 H -0.267 1.267 21 C 0.092 3.908 22 N -0.226 5.226 23 N -0.096 5.096 24 N -0.354 5.354 25 C 0.072 3.928 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.411 0.589 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.111 0.889 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.247 0.753 37 H 0.048 0.952 38 H 0.044 0.956 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.224 -26.760 15.391 33.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.008 4.008 3 C -0.274 4.274 4 C 0.391 3.609 5 O -0.436 6.436 6 N -0.354 5.354 7 C 0.057 3.943 8 H 0.099 0.901 9 C -0.209 4.209 10 C -0.127 4.127 11 C 0.008 3.992 12 N -0.392 5.392 13 C -0.416 4.416 14 H 0.072 0.928 15 C -0.277 4.277 16 N -0.618 5.618 17 Si 0.934 3.066 18 H -0.231 1.231 19 H -0.200 1.200 20 H -0.192 1.192 21 C -0.032 4.032 22 N -0.098 5.098 23 N -0.075 5.075 24 N -0.140 5.140 25 C -0.067 4.067 26 H 0.121 0.879 27 H 0.131 0.869 28 H 0.115 0.885 29 H 0.247 0.753 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.128 0.872 40 H 0.145 0.855 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.201 -27.769 13.954 33.035 hybrid contribution -0.295 1.803 0.915 2.043 sum -11.496 -25.966 14.869 32.054 Atomic orbital electron populations 1.20833 0.82160 1.06425 1.05650 1.22380 0.97497 0.85754 0.95167 1.21324 0.89557 0.95740 1.20765 1.16841 0.85389 0.82960 0.75694 1.90735 1.16416 1.83990 1.52426 1.45874 1.10458 1.05593 1.73513 1.20878 0.96610 0.78723 0.98083 0.90145 1.22062 1.02314 1.02197 0.94342 1.23267 0.99857 0.95345 0.94207 1.22477 0.96829 0.93393 0.86471 1.46108 1.66307 1.07697 1.19047 1.20060 1.33438 0.93883 0.94214 0.92761 1.26939 0.99352 1.08771 0.92599 1.71004 1.51001 1.01382 1.38376 0.83266 0.77618 0.71451 0.74297 1.23131 1.20029 1.19219 1.23035 0.98219 0.85327 0.96656 1.74567 1.19895 1.04899 1.10467 1.81892 0.98020 1.03123 1.24500 1.50623 1.05226 1.09415 1.48727 1.22716 1.04111 0.73173 1.06663 0.87892 0.86918 0.88531 0.75268 0.91342 0.90386 0.92382 0.87133 0.92485 0.92623 0.94365 0.93442 0.93816 0.87162 0.85479 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.38 71.24 0.67 -0.32 16 2 C 0.13 2.37 7.02 41.72 0.29 2.66 16 3 C -0.13 -3.35 6.99 40.82 0.29 -3.06 16 4 C 0.61 16.56 7.78 86.69 0.67 17.24 16 5 O -0.56 -16.61 14.38 -4.01 -0.06 -16.67 16 6 N -0.70 -18.50 5.07 -445.71 -2.26 -20.76 16 7 C 0.16 4.35 2.47 44.99 0.11 4.46 16 8 H 0.08 2.41 7.32 -2.39 -0.02 2.39 16 9 C -0.15 -3.35 9.29 71.98 0.67 -2.68 16 10 C -0.11 -3.42 3.67 -10.37 -0.04 -3.46 16 11 C 0.13 4.97 7.33 83.18 0.61 5.58 16 12 N -0.66 -32.87 3.69 -737.86 -2.72 -35.60 16 13 C -0.29 -17.32 11.08 84.03 0.93 -16.38 16 14 H 0.05 3.48 8.06 -2.91 -0.02 3.45 16 15 C -0.08 -5.26 5.50 84.86 0.47 -4.80 16 16 N -0.97 -64.77 13.70 21.65 0.30 -64.47 16 17 Si 1.11 56.46 25.16 68.60 1.73 58.18 16 18 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 19 H -0.27 -12.95 6.51 99.48 0.65 -12.31 16 20 H -0.27 -12.52 6.21 99.48 0.62 -11.91 16 21 C 0.09 3.86 5.27 83.27 0.44 4.29 16 22 N -0.23 -6.14 12.04 -49.99 -0.60 -6.74 16 23 N -0.10 -2.31 13.78 37.02 0.51 -1.80 16 24 N -0.35 -5.59 4.03 -355.08 -1.43 -7.02 16 25 C 0.07 0.25 11.18 127.77 1.43 1.67 16 26 H 0.10 0.93 8.14 -2.38 -0.02 0.92 16 27 H 0.11 0.31 7.84 -2.39 -0.02 0.30 16 28 H 0.10 1.46 6.43 -2.39 -0.02 1.44 16 29 H 0.41 10.25 8.29 -92.71 -0.77 9.48 16 30 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.08 1.61 7.48 -2.39 -0.02 1.60 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 36 H 0.25 16.45 8.73 -92.71 -0.81 15.64 16 37 H 0.05 1.98 7.44 -2.39 -0.02 1.96 16 38 H 0.04 1.91 4.73 -2.39 -0.01 1.90 16 39 H 0.11 -0.02 8.14 -2.38 -0.02 -0.04 16 40 H 0.13 -0.30 7.78 -2.39 -0.02 -0.32 16 41 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -82.15 337.84 2.09 -80.05 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.10 Total: 9.60 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 6.54 Total: 5.21 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -6.21 Total: -136.39 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.06 Total: -16.67 kcal Atomic # 14 Polarization: 56.46 SS G_CDS: 1.73 Total: 58.18 kcal Total: -82.15 2.09 -80.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969433508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.922 kcal (2) G-P(sol) polarization free energy of solvation -82.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds