Wall clock time and date at job start Tue Mar 31 2020 03:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46922 * 2 1 4 4 N 1.46496 * 109.47338 * 119.99773 * 2 1 3 5 5 C 1.34821 * 126.59572 * 275.00518 * 4 2 1 6 6 C 1.36590 * 106.83776 * 180.02562 * 5 4 2 7 7 C 1.47523 * 125.76864 * 179.97438 * 6 5 4 8 8 O 1.21600 * 119.99955 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00445 * 180.02562 * 7 6 5 10 10 C 1.47026 * 125.64203 * 0.02710 * 9 7 6 11 11 C 1.54321 * 107.26791 * 181.03648 * 10 9 7 12 12 C 1.55448 * 102.96961 * 22.19024 * 11 10 9 13 13 H 1.09004 * 111.00873 * 82.52495 * 12 11 10 14 14 N 1.46502 * 111.11836 * 206.45988 * 12 11 10 15 15 C 1.36930 * 120.00178 * 198.55593 * 14 12 11 16 16 H 1.08001 * 119.99945 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00259 * 180.02562 * 15 14 12 18 18 N 1.31616 * 120.00291 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99790 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47036 * 90.00006 * 19 17 15 21 21 H 1.48498 * 109.47249 * 209.99873 * 19 17 15 22 22 H 1.48498 * 109.47213 * 330.00180 * 19 17 15 23 23 C 1.47419 * 125.65221 * 179.97438 * 9 7 6 24 24 N 1.34398 * 108.46234 * 0.24124 * 6 5 4 25 25 N 1.28766 * 109.52174 * 359.58852 * 24 6 5 26 26 H 1.09002 * 109.47044 * 299.99992 * 1 2 3 27 27 H 1.09002 * 109.47145 * 60.00170 * 1 2 3 28 28 H 1.08997 * 109.46898 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47057 * 240.00195 * 2 1 3 30 30 H 1.09005 * 109.47012 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47071 * 299.99875 * 3 2 1 32 32 H 1.08999 * 109.47618 * 59.99776 * 3 2 1 33 33 H 1.07997 * 126.57680 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.88266 * 300.45023 * 10 9 7 35 35 H 1.08997 * 109.88244 * 61.46381 * 10 9 7 36 36 H 1.08998 * 110.71927 * 140.55469 * 11 10 9 37 37 H 1.08997 * 110.72400 * 263.82847 * 11 10 9 38 38 H 0.97005 * 119.99716 * 18.56000 * 14 12 11 39 39 H 0.96993 * 120.00247 * 180.02562 * 18 17 15 40 40 H 1.09002 * 110.36926 * 274.73432 * 23 9 7 41 41 H 1.08995 * 110.36556 * 36.94716 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1973 -0.1513 2.4188 6 6 2.6644 -1.1487 3.2266 7 6 3.0018 -1.0135 4.6564 8 8 2.8702 0.0594 5.2133 9 7 3.4561 -2.0792 5.3454 10 6 3.6622 -3.4284 4.7987 11 6 4.1643 -4.3191 5.9545 12 6 3.6733 -3.5597 7.2189 13 1 2.6311 -3.7944 7.4356 14 7 4.5261 -3.8511 8.3740 15 6 4.0700 -3.6044 9.6413 16 1 3.0814 -3.1955 9.7894 17 6 4.8782 -3.8799 10.7358 18 7 4.4396 -3.6433 11.9539 19 14 6.5883 -4.5865 10.4796 20 1 7.5676 -3.4778 10.3494 21 1 6.9527 -5.4348 11.6427 22 1 6.6041 -5.4086 9.2430 23 6 3.8294 -2.0847 6.7715 24 7 2.7701 -2.2727 2.4974 25 7 2.3902 -2.0392 1.2894 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 2.0077 0.8728 2.7045 34 1 2.7213 -3.8191 4.4113 35 1 4.4059 -3.3961 4.0025 36 1 3.7140 -5.3103 5.9011 37 1 5.2521 -4.3876 5.9443 38 1 5.4139 -4.2186 8.2410 39 1 5.0045 -3.8355 12.7186 40 1 4.8620 -1.7580 6.8946 41 1 3.1585 -1.4424 7.3417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970359797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:17 Heat of formation + Delta-G solvation = 83.271973 kcal Electronic energy + Delta-G solvation = -23185.405544 eV Core-core repulsion = 19717.301456 eV Total energy + Delta-G solvation = -3468.104088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.40481 -39.50216 -37.27090 -36.84573 -34.21630 -31.92248 -31.63318 -30.89471 -29.78670 -28.05915 -27.78895 -24.84332 -24.03390 -22.90805 -22.03151 -21.10208 -20.29270 -19.52093 -17.96958 -17.31407 -16.42311 -16.34233 -15.89878 -15.31330 -15.16955 -14.82643 -14.44669 -13.99811 -13.72642 -13.66929 -13.21170 -13.06587 -12.95880 -12.71828 -12.59184 -12.36084 -12.25395 -12.16098 -11.88160 -11.73470 -11.30292 -11.12733 -10.83464 -10.67604 -10.58043 -10.41021 -10.02196 -9.93549 -9.60452 -9.42731 -9.00116 -8.30939 -7.33904 -5.78878 -3.16690 0.96861 1.68088 1.74358 3.15287 3.37590 3.38666 3.40486 3.45826 3.81735 4.06756 4.14393 4.33525 4.48206 4.57469 4.72196 4.81399 4.88292 4.95012 4.99103 5.01431 5.18033 5.24156 5.31033 5.43245 5.46914 5.55607 5.58594 5.66883 5.88051 5.99621 6.07600 6.15996 6.23204 6.38319 6.53988 6.59567 6.83986 7.71448 7.81975 7.96355 8.31414 8.39924 9.16673 9.88517 10.06819 11.38915 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.039979 B = 0.002944 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.197774 B = 9508.319287 C = 9795.644022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 C -0.169 4.169 4 N -0.357 5.357 5 C 0.091 3.909 6 C -0.091 4.091 7 C 0.610 3.390 8 O -0.545 6.545 9 N -0.598 5.598 10 C 0.115 3.885 11 C -0.145 4.145 12 C 0.177 3.823 13 H 0.073 0.927 14 N -0.736 5.736 15 C -0.251 4.251 16 H 0.093 0.907 17 C 0.008 3.992 18 N -0.930 5.930 19 Si 0.884 3.116 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.276 1.276 23 C 0.084 3.916 24 N -0.201 5.201 25 N -0.072 5.072 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.201 0.799 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.364 0.636 39 H 0.260 0.740 40 H 0.069 0.931 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.012 7.528 -28.081 29.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 C -0.228 4.228 4 N -0.144 5.144 5 C -0.066 4.066 6 C -0.231 4.231 7 C 0.396 3.604 8 O -0.422 6.422 9 N -0.330 5.330 10 C -0.009 4.009 11 C -0.184 4.184 12 C 0.065 3.935 13 H 0.091 0.909 14 N -0.378 5.378 15 C -0.381 4.381 16 H 0.110 0.890 17 C -0.188 4.188 18 N -0.577 5.577 19 Si 0.714 3.286 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.202 1.202 23 C -0.040 4.040 24 N -0.074 5.074 25 N -0.051 5.051 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.218 0.782 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.198 0.802 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.101 6.880 -28.367 29.820 hybrid contribution 1.123 0.532 0.286 1.275 sum -4.978 7.412 -28.081 29.466 Atomic orbital electron populations 1.22263 0.92490 1.03899 1.03849 1.21620 0.95685 0.93402 0.85022 1.22273 1.02715 0.93354 1.04423 1.50738 1.44721 1.09803 1.09096 1.23235 0.97709 1.01097 0.84511 1.21498 1.13894 0.90571 0.97108 1.16388 0.77609 0.83317 0.83059 1.90808 1.55555 1.26440 1.69413 1.48274 1.62843 1.09658 1.12270 1.22028 1.01312 0.81384 0.96139 1.23030 1.01598 0.98977 0.94781 1.21338 0.95795 0.90253 0.86093 0.90880 1.42645 1.16105 1.76885 1.02131 1.19088 1.01381 1.36451 0.81138 0.88952 1.24683 0.98070 1.01007 0.95051 1.69699 1.37073 1.53695 0.97232 0.86556 0.85845 0.79104 0.77073 1.20988 1.21674 1.20175 1.23366 1.00717 1.01827 0.78133 1.74745 1.10970 1.23192 0.98515 1.81980 1.18451 0.91822 1.12870 0.91382 0.89711 0.91186 0.86859 0.91083 0.89304 0.90963 0.78210 0.90948 0.91235 0.89946 0.90796 0.80216 0.92947 0.91292 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 9.52 37.16 0.35 -0.31 16 2 C 0.14 0.72 3.96 -67.93 -0.27 0.45 16 3 C -0.17 -0.53 8.85 37.16 0.33 -0.21 16 4 N -0.36 -3.30 3.54 -54.57 -0.19 -3.49 16 5 C 0.09 0.95 10.40 -16.83 -0.18 0.78 16 6 C -0.09 -1.28 6.85 -83.55 -0.57 -1.85 16 7 C 0.61 10.32 7.85 -12.47 -0.10 10.23 16 8 O -0.54 -10.55 17.12 5.28 0.09 -10.45 16 9 N -0.60 -10.08 3.33 -171.74 -0.57 -10.65 16 10 C 0.11 1.66 5.52 -3.06 -0.02 1.64 16 11 C -0.15 -2.20 6.59 -24.74 -0.16 -2.36 16 12 C 0.18 3.38 3.70 -65.61 -0.24 3.14 16 13 H 0.07 1.44 8.13 -51.93 -0.42 1.02 16 14 N -0.74 -17.07 5.08 -51.19 -0.26 -17.33 16 15 C -0.25 -6.99 10.47 -15.06 -0.16 -7.15 16 16 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 17 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 18 N -0.93 -29.09 13.97 55.49 0.78 -28.31 16 19 Si 0.88 21.85 27.74 -169.99 -4.71 17.14 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.28 -6.34 6.52 56.52 0.37 -5.98 16 23 C 0.08 1.60 6.59 -2.52 -0.02 1.58 16 24 N -0.20 -2.81 9.77 32.84 0.32 -2.49 16 25 N -0.07 -0.89 13.78 60.35 0.83 -0.06 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.07 0.22 7.23 -51.93 -0.38 -0.16 16 33 H 0.20 1.55 7.34 -52.49 -0.39 1.16 16 34 H 0.07 1.01 7.62 -51.93 -0.40 0.61 16 35 H 0.07 0.96 7.72 -51.93 -0.40 0.56 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.09 8.01 -51.93 -0.42 0.68 16 38 H 0.36 8.23 5.58 -40.82 -0.23 8.00 16 39 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.08 1.60 8.03 -51.93 -0.42 1.19 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -34.56 342.02 -5.70 -40.27 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.01 Total: 4.15 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -1.12 Total: 6.08 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: 0.90 Total: -62.33 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.56 -5.70 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970359797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.539 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds