Wall clock time and date at job start Tue Mar 31 2020 03:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46922 * 2 1 4 4 N 1.46496 * 109.47338 * 119.99773 * 2 1 3 5 5 C 1.34821 * 126.59572 * 275.00518 * 4 2 1 6 6 C 1.36590 * 106.83776 * 180.02562 * 5 4 2 7 7 C 1.47523 * 125.76864 * 179.97438 * 6 5 4 8 8 O 1.21600 * 119.99955 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00445 * 180.02562 * 7 6 5 10 10 C 1.47026 * 125.64203 * 0.02710 * 9 7 6 11 11 C 1.54321 * 107.26791 * 181.03648 * 10 9 7 12 12 C 1.55448 * 102.96961 * 22.19024 * 11 10 9 13 13 H 1.09004 * 111.00873 * 82.52495 * 12 11 10 14 14 N 1.46502 * 111.11836 * 206.45988 * 12 11 10 15 15 C 1.36930 * 120.00178 * 198.55593 * 14 12 11 16 16 H 1.08001 * 119.99945 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00259 * 180.02562 * 15 14 12 18 18 N 1.31616 * 120.00291 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99790 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47036 * 90.00006 * 19 17 15 21 21 H 1.48498 * 109.47249 * 209.99873 * 19 17 15 22 22 H 1.48498 * 109.47213 * 330.00180 * 19 17 15 23 23 C 1.47419 * 125.65221 * 179.97438 * 9 7 6 24 24 N 1.34398 * 108.46234 * 0.24124 * 6 5 4 25 25 N 1.28766 * 109.52174 * 359.58852 * 24 6 5 26 26 H 1.09002 * 109.47044 * 299.99992 * 1 2 3 27 27 H 1.09002 * 109.47145 * 60.00170 * 1 2 3 28 28 H 1.08997 * 109.46898 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47057 * 240.00195 * 2 1 3 30 30 H 1.09005 * 109.47012 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47071 * 299.99875 * 3 2 1 32 32 H 1.08999 * 109.47618 * 59.99776 * 3 2 1 33 33 H 1.07997 * 126.57680 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.88266 * 300.45023 * 10 9 7 35 35 H 1.08997 * 109.88244 * 61.46381 * 10 9 7 36 36 H 1.08998 * 110.71927 * 140.55469 * 11 10 9 37 37 H 1.08997 * 110.72400 * 263.82847 * 11 10 9 38 38 H 0.97005 * 119.99716 * 18.56000 * 14 12 11 39 39 H 0.96993 * 120.00247 * 180.02562 * 18 17 15 40 40 H 1.09002 * 110.36926 * 274.73432 * 23 9 7 41 41 H 1.08995 * 110.36556 * 36.94716 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1973 -0.1513 2.4188 6 6 2.6644 -1.1487 3.2266 7 6 3.0018 -1.0135 4.6564 8 8 2.8702 0.0594 5.2133 9 7 3.4561 -2.0792 5.3454 10 6 3.6622 -3.4284 4.7987 11 6 4.1643 -4.3191 5.9545 12 6 3.6733 -3.5597 7.2189 13 1 2.6311 -3.7944 7.4356 14 7 4.5261 -3.8511 8.3740 15 6 4.0700 -3.6044 9.6413 16 1 3.0814 -3.1955 9.7894 17 6 4.8782 -3.8799 10.7358 18 7 4.4396 -3.6433 11.9539 19 14 6.5883 -4.5865 10.4796 20 1 7.5676 -3.4778 10.3494 21 1 6.9527 -5.4348 11.6427 22 1 6.6041 -5.4086 9.2430 23 6 3.8294 -2.0847 6.7715 24 7 2.7701 -2.2727 2.4974 25 7 2.3902 -2.0392 1.2894 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 2.0077 0.8728 2.7045 34 1 2.7213 -3.8191 4.4113 35 1 4.4059 -3.3961 4.0025 36 1 3.7140 -5.3103 5.9011 37 1 5.2521 -4.3876 5.9443 38 1 5.4139 -4.2186 8.2410 39 1 5.0045 -3.8355 12.7186 40 1 4.8620 -1.7580 6.8946 41 1 3.1585 -1.4424 7.3417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970359797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:17 Heat of formation + Delta-G solvation = 58.079491 kcal Electronic energy + Delta-G solvation = -23186.497972 eV Core-core repulsion = 19717.301456 eV Total energy + Delta-G solvation = -3469.196516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.30776 -40.85015 -38.71738 -37.42777 -36.04153 -33.62709 -32.51839 -32.09313 -31.21536 -29.34061 -28.29397 -26.24375 -24.92350 -24.51805 -23.25809 -21.86985 -21.77534 -20.67644 -19.76869 -18.55836 -17.62755 -17.44730 -16.96295 -16.56984 -16.25021 -15.82743 -15.61017 -15.33469 -15.24708 -14.75024 -14.36470 -14.28615 -13.99277 -13.85676 -13.59841 -13.46381 -13.24556 -13.17572 -12.97166 -12.61683 -12.54388 -12.34741 -12.17635 -12.14764 -11.97964 -11.82634 -11.57223 -11.32174 -11.30092 -11.02210 -10.40769 -9.71641 -9.36165 -8.02223 -5.38722 0.11636 0.59158 1.04794 1.40720 1.44771 1.51720 1.88150 2.16559 2.49785 3.06032 3.27365 3.31141 3.49468 3.59918 3.79838 3.82515 3.90866 4.00214 4.00830 4.20952 4.23138 4.36393 4.45476 4.55811 4.61237 4.64435 4.76180 4.77179 4.89292 4.92796 5.00218 5.12676 5.16644 5.20497 5.22823 5.34770 5.49465 5.76592 6.21174 6.42581 6.79976 7.04150 7.06414 7.78669 7.99790 9.18904 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.039979 B = 0.002944 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.197774 B = 9508.319287 C = 9795.644022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 C -0.166 4.166 4 N -0.342 5.342 5 C 0.110 3.890 6 C -0.119 4.119 7 C 0.608 3.392 8 O -0.578 6.578 9 N -0.602 5.602 10 C 0.122 3.878 11 C -0.130 4.130 12 C 0.170 3.830 13 H 0.062 0.938 14 N -0.736 5.736 15 C -0.238 4.238 16 H 0.055 0.945 17 C -0.062 4.062 18 N -0.983 5.983 19 Si 0.957 3.043 20 H -0.280 1.280 21 H -0.296 1.296 22 H -0.243 1.243 23 C 0.094 3.906 24 N -0.216 5.216 25 N -0.086 5.086 26 H 0.064 0.936 27 H 0.112 0.888 28 H 0.054 0.946 29 H 0.125 0.875 30 H 0.063 0.937 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.227 0.773 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.371 0.629 39 H 0.259 0.741 40 H 0.061 0.939 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.353 7.404 -31.630 32.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 C -0.224 4.224 4 N -0.127 5.127 5 C -0.048 4.048 6 C -0.258 4.258 7 C 0.396 3.604 8 O -0.458 6.458 9 N -0.334 5.334 10 C 0.000 4.000 11 C -0.168 4.168 12 C 0.060 3.940 13 H 0.080 0.920 14 N -0.379 5.379 15 C -0.369 4.369 16 H 0.073 0.927 17 C -0.253 4.253 18 N -0.632 5.632 19 Si 0.783 3.217 20 H -0.207 1.207 21 H -0.223 1.223 22 H -0.167 1.167 23 C -0.032 4.032 24 N -0.089 5.089 25 N -0.066 5.066 26 H 0.083 0.917 27 H 0.131 0.869 28 H 0.073 0.927 29 H 0.143 0.857 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.093 0.907 33 H 0.243 0.757 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.104 0.896 38 H 0.206 0.794 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.461 6.736 -32.027 33.180 hybrid contribution 0.755 0.698 1.249 1.617 sum -4.706 7.433 -30.778 32.011 Atomic orbital electron populations 1.22271 0.91433 1.03291 1.05114 1.22125 0.96450 0.94300 0.83613 1.22309 1.02238 0.91984 1.05902 1.51095 1.42977 1.08808 1.09840 1.23565 0.95580 1.01437 0.84244 1.21197 1.16651 0.92072 0.95907 1.16782 0.76722 0.82660 0.84210 1.90777 1.56946 1.27614 1.70484 1.48305 1.62973 1.10848 1.11250 1.22093 1.02132 0.79812 0.95972 1.22987 1.02410 0.99486 0.91955 1.21450 0.94926 0.91049 0.86607 0.91950 1.42541 1.16853 1.77009 1.01472 1.19007 0.99824 1.34712 0.83329 0.92652 1.25550 1.02894 1.02315 0.94575 1.69890 1.39014 1.55962 0.98364 0.85387 0.79798 0.78493 0.77982 1.20673 1.22294 1.16722 1.22986 0.99549 1.00992 0.79650 1.74693 1.11660 1.23560 0.98995 1.81891 1.18868 0.93596 1.12242 0.91677 0.86904 0.92698 0.85732 0.91827 0.86705 0.90654 0.75651 0.90143 0.89902 0.87780 0.89626 0.79415 0.93250 0.92023 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 9.52 71.98 0.69 -0.17 16 2 C 0.13 0.95 3.96 44.99 0.18 1.13 16 3 C -0.17 -0.51 8.85 71.98 0.64 0.13 16 4 N -0.34 -5.58 3.54 -326.55 -1.16 -6.73 16 5 C 0.11 2.11 10.40 83.85 0.87 2.98 16 6 C -0.12 -3.20 6.85 40.82 0.28 -2.92 16 7 C 0.61 20.57 7.85 86.69 0.68 21.25 16 8 O -0.58 -22.76 17.12 -4.03 -0.07 -22.83 16 9 N -0.60 -20.15 3.33 -815.53 -2.71 -22.86 16 10 C 0.12 3.33 5.52 86.73 0.48 3.80 16 11 C -0.13 -3.63 6.59 31.88 0.21 -3.42 16 12 C 0.17 6.45 3.70 46.49 0.17 6.62 16 13 H 0.06 2.51 8.13 -2.38 -0.02 2.49 16 14 N -0.74 -33.77 5.08 -315.86 -1.61 -35.38 16 15 C -0.24 -13.57 10.47 84.04 0.88 -12.69 16 16 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 17 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 18 N -0.98 -63.42 13.97 21.65 0.30 -63.12 16 19 Si 0.96 44.99 27.74 68.60 1.90 46.89 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 22 H -0.24 -10.02 6.52 99.48 0.65 -9.38 16 23 C 0.09 3.63 6.59 86.86 0.57 4.20 16 24 N -0.22 -5.75 9.77 -50.00 -0.49 -6.24 16 25 N -0.09 -2.00 13.78 37.02 0.51 -1.49 16 26 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16 27 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.07 0.21 7.23 -2.39 -0.02 0.20 16 33 H 0.23 2.98 7.34 -2.91 -0.02 2.95 16 34 H 0.08 2.10 7.62 -2.39 -0.02 2.08 16 35 H 0.08 2.09 7.72 -2.39 -0.02 2.07 16 36 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.09 2.24 8.01 -2.39 -0.02 2.22 16 38 H 0.37 15.97 5.58 -92.70 -0.52 15.46 16 39 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 40 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.05 2.16 8.03 -2.39 -0.02 2.15 16 Total: -1.00 -77.72 342.02 3.26 -74.47 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.46 Total: 19.55 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: 6.11 Total: 17.75 kcal Atomic # 7 Polarization: -130.68 SS G_CDS: -5.15 Total: -135.83 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.07 Total: -22.83 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.89 kcal Total: -77.72 3.26 -74.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970359797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.546 kcal (2) G-P(sol) polarization free energy of solvation -77.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds