Wall clock time and date at job start Tue Mar 31 2020 03:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47217 * 2 1 4 4 N 1.46501 * 109.47056 * 179.97438 * 3 2 1 5 5 C 1.34816 * 126.59451 * 125.29301 * 4 3 2 6 6 C 1.36589 * 106.84061 * 180.13208 * 5 4 3 7 7 C 1.47523 * 125.77056 * 179.89759 * 6 5 4 8 8 O 1.21600 * 119.99955 * 359.71444 * 7 6 5 9 9 N 1.34781 * 120.00445 * 179.71525 * 7 6 5 10 10 C 1.47026 * 125.64203 * 0.02710 * 9 7 6 11 11 C 1.54321 * 107.26791 * 181.03648 * 10 9 7 12 12 C 1.55448 * 102.96961 * 22.19024 * 11 10 9 13 13 H 1.09004 * 111.00873 * 82.52495 * 12 11 10 14 14 N 1.46502 * 111.11836 * 206.45988 * 12 11 10 15 15 C 1.36930 * 120.00178 * 198.55593 * 14 12 11 16 16 H 1.08001 * 119.99945 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00259 * 180.02562 * 15 14 12 18 18 N 1.31616 * 120.00291 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99790 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47036 * 90.00006 * 19 17 15 21 21 H 1.48498 * 109.47249 * 209.99873 * 19 17 15 22 22 H 1.48498 * 109.47213 * 330.00180 * 19 17 15 23 23 C 1.47419 * 125.65221 * 179.97438 * 9 7 6 24 24 N 1.34400 * 108.46047 * 359.63564 * 6 5 4 25 25 N 1.28762 * 109.51995 * 0.22409 * 24 6 5 26 26 H 1.08989 * 109.47177 * 300.00835 * 1 2 3 27 27 H 1.09008 * 109.46514 * 60.00249 * 1 2 3 28 28 H 1.08994 * 109.47035 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47672 * 239.99058 * 2 1 3 30 30 H 1.09008 * 109.46514 * 119.99751 * 2 1 3 31 31 H 1.09001 * 109.47389 * 59.99756 * 3 2 1 32 32 H 1.08999 * 109.46930 * 299.99430 * 3 2 1 33 33 H 1.08008 * 126.57591 * 359.97438 * 5 4 3 34 34 H 1.08998 * 109.88266 * 300.45023 * 10 9 7 35 35 H 1.08997 * 109.88244 * 61.46381 * 10 9 7 36 36 H 1.08998 * 110.71927 * 140.55469 * 11 10 9 37 37 H 1.08997 * 110.72400 * 263.82847 * 11 10 9 38 38 H 0.97005 * 119.99716 * 18.56000 * 14 12 11 39 39 H 0.96993 * 120.00247 * 180.02562 * 18 17 15 40 40 H 1.09002 * 110.36926 * 274.73432 * 23 9 7 41 41 H 1.08995 * 110.36556 * 36.94716 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3091 2.0677 -0.8826 6 6 5.5945 1.7985 -0.5070 7 6 6.8109 2.2782 -1.1900 8 8 6.7164 2.9741 -2.1827 9 7 8.0270 1.9452 -0.7138 10 6 8.2849 1.1140 0.4712 11 6 9.8158 1.0262 0.6449 12 6 10.3261 2.2791 -0.1206 13 1 10.2648 3.1705 0.5038 14 7 11.6916 2.0777 -0.6119 15 6 12.4574 3.1558 -0.9672 16 1 12.0550 4.1547 -0.8848 17 6 13.7510 2.9649 -1.4331 18 7 14.4873 4.0012 -1.7741 19 14 14.4467 1.2373 -1.5762 20 1 14.1462 0.6927 -2.9246 21 1 15.9175 1.2777 -1.3752 22 1 13.8296 0.3679 -0.5425 23 6 9.3187 2.3532 -1.2953 24 7 5.5637 1.0275 0.5935 25 7 4.3405 0.7966 0.9229 26 1 -0.3633 0.5139 0.8898 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5140 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 1.6767 1.9564 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9968 2.6645 -1.7269 34 1 7.8378 1.5751 1.3519 35 1 7.8685 0.1176 0.3229 36 1 10.0881 1.0810 1.6989 37 1 10.2036 0.1136 0.1922 38 1 12.0531 1.1806 -0.6855 39 1 15.3911 3.8678 -2.1001 40 1 9.6109 1.6664 -2.0898 41 1 9.2574 3.3716 -1.6787 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970360098.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:20 Heat of formation + Delta-G solvation = 79.848279 kcal Electronic energy + Delta-G solvation = -22903.362449 eV Core-core repulsion = 19435.109899 eV Total energy + Delta-G solvation = -3468.252550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.37497 -39.49761 -37.26489 -36.39143 -34.23137 -33.00542 -31.70336 -30.94829 -29.81101 -28.10147 -27.18474 -24.57381 -23.31964 -22.70610 -22.19243 -21.64139 -20.25684 -19.47004 -17.99135 -17.35897 -16.58455 -16.32886 -15.95795 -15.69803 -15.13848 -14.84718 -14.49656 -14.11303 -13.84238 -13.66582 -13.25081 -13.08240 -12.73735 -12.65439 -12.53166 -12.35447 -12.28157 -12.04384 -11.82996 -11.50636 -11.28470 -11.13237 -10.83813 -10.67328 -10.57642 -10.41262 -10.02589 -9.94377 -9.60616 -9.44075 -9.00333 -8.31621 -7.34106 -5.78985 -3.16824 0.94661 1.66537 1.75960 3.14746 3.37170 3.37795 3.40304 3.45681 3.85972 4.06152 4.16360 4.42222 4.54035 4.57293 4.64782 4.77577 4.78247 4.95262 4.98108 5.13068 5.23037 5.30541 5.38296 5.42255 5.54791 5.57115 5.60640 5.66357 5.87523 5.99185 6.06913 6.11393 6.22780 6.37841 6.53432 6.59002 6.83600 7.70175 7.80264 7.96152 8.30483 8.39746 9.16481 9.88329 10.06607 11.38747 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.043502 B = 0.002751 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.499372 B =10175.353454 C =10481.037215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.121 3.879 4 N -0.363 5.363 5 C 0.090 3.910 6 C -0.091 4.091 7 C 0.610 3.390 8 O -0.544 6.544 9 N -0.598 5.598 10 C 0.115 3.885 11 C -0.145 4.145 12 C 0.177 3.823 13 H 0.073 0.927 14 N -0.736 5.736 15 C -0.251 4.251 16 H 0.093 0.907 17 C 0.008 3.992 18 N -0.930 5.930 19 Si 0.884 3.116 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.276 1.276 23 C 0.084 3.916 24 N -0.200 5.200 25 N -0.069 5.069 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.204 0.796 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.364 0.636 39 H 0.260 0.740 40 H 0.069 0.931 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.700 -8.319 4.963 30.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.000 4.000 4 N -0.148 5.148 5 C -0.067 4.067 6 C -0.231 4.231 7 C 0.396 3.604 8 O -0.422 6.422 9 N -0.330 5.330 10 C -0.009 4.009 11 C -0.184 4.184 12 C 0.065 3.935 13 H 0.091 0.909 14 N -0.378 5.378 15 C -0.381 4.381 16 H 0.110 0.890 17 C -0.188 4.188 18 N -0.577 5.577 19 Si 0.714 3.286 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.202 1.202 23 C -0.041 4.041 24 N -0.074 5.074 25 N -0.049 5.049 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.221 0.779 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.198 0.802 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -28.661 -8.561 5.620 30.436 hybrid contribution 0.351 -0.586 -1.087 1.284 sum -28.310 -9.147 4.533 30.094 Atomic orbital electron populations 1.21704 0.93851 1.02885 1.02349 1.21833 0.96940 0.94592 1.04270 1.22146 0.72637 1.00061 1.05129 1.50549 1.08751 1.35211 1.20315 1.23371 0.90148 0.97113 0.96054 1.21511 0.94526 1.07925 0.99098 1.16383 0.80789 0.80111 0.83099 1.90811 1.86109 1.39329 1.25940 1.48276 1.05447 1.50225 1.29096 1.22029 0.96001 0.95035 0.87800 1.23031 0.93531 0.99969 1.01867 1.21337 0.84310 0.95956 0.91871 0.90875 1.42645 1.10244 1.05996 1.78877 1.19085 0.94581 0.87960 1.36428 0.88952 1.24688 0.96576 0.96717 1.00863 1.69699 1.09918 1.28367 1.49677 0.86553 0.78529 0.85481 0.77994 1.20988 1.21673 1.20193 1.23371 0.80823 1.01102 0.98763 1.74760 1.12415 1.10064 1.10152 1.81958 0.93551 1.17547 1.11887 0.92074 0.92212 0.91630 0.91021 0.89998 0.88365 0.87728 0.77938 0.90932 0.91244 0.89938 0.90794 0.80217 0.92951 0.91284 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 9.91 37.16 0.37 -0.04 16 2 C -0.14 -0.61 6.14 -26.73 -0.16 -0.78 16 3 C 0.12 0.54 6.54 -4.04 -0.03 0.52 16 4 N -0.36 -3.25 3.69 -61.06 -0.23 -3.48 16 5 C 0.09 0.91 11.27 -16.84 -0.19 0.72 16 6 C -0.09 -1.26 6.85 -83.55 -0.57 -1.83 16 7 C 0.61 10.25 7.85 -12.47 -0.10 10.15 16 8 O -0.54 -10.49 17.12 5.28 0.09 -10.40 16 9 N -0.60 -10.03 3.33 -171.74 -0.57 -10.60 16 10 C 0.11 1.65 5.52 -3.06 -0.02 1.63 16 11 C -0.15 -2.19 6.59 -24.74 -0.16 -2.35 16 12 C 0.18 3.37 3.70 -65.61 -0.24 3.13 16 13 H 0.07 1.44 8.13 -51.93 -0.42 1.02 16 14 N -0.74 -17.04 5.08 -51.19 -0.26 -17.30 16 15 C -0.25 -6.98 10.47 -15.06 -0.16 -7.14 16 16 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 17 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 18 N -0.93 -29.05 13.97 55.49 0.78 -28.27 16 19 Si 0.88 21.84 27.74 -169.99 -4.71 17.12 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 23 C 0.08 1.59 6.59 -2.52 -0.02 1.57 16 24 N -0.20 -2.77 9.77 32.84 0.32 -2.44 16 25 N -0.07 -0.84 13.65 60.35 0.82 -0.02 16 26 H 0.06 0.14 8.14 -51.94 -0.42 -0.29 16 27 H 0.06 0.12 8.14 -51.92 -0.42 -0.30 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.20 8.08 -51.93 -0.42 -0.22 16 33 H 0.20 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.07 1.00 7.62 -51.93 -0.40 0.61 16 35 H 0.07 0.95 7.73 -51.93 -0.40 0.55 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.09 8.01 -51.93 -0.42 0.67 16 38 H 0.36 8.22 5.58 -40.82 -0.23 7.99 16 39 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.08 1.60 8.03 -51.93 -0.42 1.18 16 LS Contribution 344.74 15.07 5.20 5.20 Total: -1.00 -34.60 344.74 -6.04 -40.63 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.10 Total: 3.84 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -1.37 Total: 5.72 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 0.86 Total: -62.11 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.60 -6.04 -40.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970360098.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.481 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds