Wall clock time and date at job start Tue Mar 31 2020 03:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47217 * 2 1 4 4 N 1.46501 * 109.47056 * 179.97438 * 3 2 1 5 5 C 1.34816 * 126.59451 * 125.29301 * 4 3 2 6 6 C 1.36589 * 106.84061 * 180.13208 * 5 4 3 7 7 C 1.47523 * 125.77056 * 179.89759 * 6 5 4 8 8 O 1.21600 * 119.99955 * 359.71444 * 7 6 5 9 9 N 1.34781 * 120.00445 * 179.71525 * 7 6 5 10 10 C 1.47026 * 125.64203 * 0.02710 * 9 7 6 11 11 C 1.54321 * 107.26791 * 181.03648 * 10 9 7 12 12 C 1.55448 * 102.96961 * 22.19024 * 11 10 9 13 13 H 1.09004 * 111.00873 * 82.52495 * 12 11 10 14 14 N 1.46502 * 111.11836 * 206.45988 * 12 11 10 15 15 C 1.36930 * 120.00178 * 198.55593 * 14 12 11 16 16 H 1.08001 * 119.99945 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00259 * 180.02562 * 15 14 12 18 18 N 1.31616 * 120.00291 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99790 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47036 * 90.00006 * 19 17 15 21 21 H 1.48498 * 109.47249 * 209.99873 * 19 17 15 22 22 H 1.48498 * 109.47213 * 330.00180 * 19 17 15 23 23 C 1.47419 * 125.65221 * 179.97438 * 9 7 6 24 24 N 1.34400 * 108.46047 * 359.63564 * 6 5 4 25 25 N 1.28762 * 109.51995 * 0.22409 * 24 6 5 26 26 H 1.08989 * 109.47177 * 300.00835 * 1 2 3 27 27 H 1.09008 * 109.46514 * 60.00249 * 1 2 3 28 28 H 1.08994 * 109.47035 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47672 * 239.99058 * 2 1 3 30 30 H 1.09008 * 109.46514 * 119.99751 * 2 1 3 31 31 H 1.09001 * 109.47389 * 59.99756 * 3 2 1 32 32 H 1.08999 * 109.46930 * 299.99430 * 3 2 1 33 33 H 1.08008 * 126.57591 * 359.97438 * 5 4 3 34 34 H 1.08998 * 109.88266 * 300.45023 * 10 9 7 35 35 H 1.08997 * 109.88244 * 61.46381 * 10 9 7 36 36 H 1.08998 * 110.71927 * 140.55469 * 11 10 9 37 37 H 1.08997 * 110.72400 * 263.82847 * 11 10 9 38 38 H 0.97005 * 119.99716 * 18.56000 * 14 12 11 39 39 H 0.96993 * 120.00247 * 180.02562 * 18 17 15 40 40 H 1.09002 * 110.36926 * 274.73432 * 23 9 7 41 41 H 1.08995 * 110.36556 * 36.94716 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3091 2.0677 -0.8826 6 6 5.5945 1.7985 -0.5070 7 6 6.8109 2.2782 -1.1900 8 8 6.7164 2.9741 -2.1827 9 7 8.0270 1.9452 -0.7138 10 6 8.2849 1.1140 0.4712 11 6 9.8158 1.0262 0.6449 12 6 10.3261 2.2791 -0.1206 13 1 10.2648 3.1705 0.5038 14 7 11.6916 2.0777 -0.6119 15 6 12.4574 3.1558 -0.9672 16 1 12.0550 4.1547 -0.8848 17 6 13.7510 2.9649 -1.4331 18 7 14.4873 4.0012 -1.7741 19 14 14.4467 1.2373 -1.5762 20 1 14.1462 0.6927 -2.9246 21 1 15.9175 1.2777 -1.3752 22 1 13.8296 0.3679 -0.5425 23 6 9.3187 2.3532 -1.2953 24 7 5.5637 1.0275 0.5935 25 7 4.3405 0.7966 0.9229 26 1 -0.3633 0.5139 0.8898 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5140 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 1.6767 1.9564 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9968 2.6645 -1.7269 34 1 7.8378 1.5751 1.3519 35 1 7.8685 0.1176 0.3229 36 1 10.0881 1.0810 1.6989 37 1 10.2036 0.1136 0.1922 38 1 12.0531 1.1806 -0.6855 39 1 15.3911 3.8678 -2.1001 40 1 9.6109 1.6664 -2.0898 41 1 9.2574 3.3716 -1.6787 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970360098.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:19 Heat of formation + Delta-G solvation = 54.817640 kcal Electronic energy + Delta-G solvation = -22904.447859 eV Core-core repulsion = 19435.109899 eV Total energy + Delta-G solvation = -3469.337960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.25615 -40.83470 -38.70972 -36.92936 -36.03643 -33.75631 -33.44629 -32.08265 -31.25154 -29.43478 -27.88231 -26.08705 -24.57332 -23.69191 -23.28404 -22.32956 -21.81326 -20.60358 -19.76224 -18.62424 -17.62733 -17.42218 -17.03986 -16.69585 -16.32210 -15.87858 -15.71547 -15.41368 -15.28906 -14.74928 -14.45249 -14.35046 -13.97869 -13.94423 -13.58060 -13.45395 -13.15243 -12.98048 -12.95984 -12.65197 -12.42631 -12.27778 -12.17386 -12.04864 -11.82580 -11.73809 -11.57137 -11.29345 -11.26223 -11.02082 -10.38803 -9.71129 -9.35983 -8.02066 -5.38546 0.13058 0.60232 1.09087 1.40682 1.44764 1.51695 1.89390 2.17660 2.49781 3.08013 3.27485 3.32165 3.49763 3.66298 3.83612 3.84266 3.93793 4.00967 4.15924 4.21875 4.23523 4.36724 4.44252 4.48470 4.53072 4.67643 4.76881 4.83318 4.92350 5.00427 5.12104 5.12846 5.18024 5.22971 5.32760 5.35025 5.49720 5.76687 6.21235 6.43386 6.80678 7.04894 7.06647 7.78788 7.99833 9.18945 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.043502 B = 0.002751 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.499372 B =10175.353454 C =10481.037215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.110 3.890 4 N -0.348 5.348 5 C 0.111 3.889 6 C -0.121 4.121 7 C 0.608 3.392 8 O -0.578 6.578 9 N -0.603 5.603 10 C 0.123 3.877 11 C -0.130 4.130 12 C 0.170 3.830 13 H 0.063 0.937 14 N -0.736 5.736 15 C -0.238 4.238 16 H 0.055 0.945 17 C -0.063 4.063 18 N -0.982 5.982 19 Si 0.957 3.043 20 H -0.280 1.280 21 H -0.296 1.296 22 H -0.243 1.243 23 C 0.094 3.906 24 N -0.217 5.217 25 N -0.084 5.084 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.139 0.861 33 H 0.235 0.765 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.371 0.629 39 H 0.259 0.741 40 H 0.061 0.939 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.261 -10.433 5.748 33.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C -0.008 4.008 4 N -0.132 5.132 5 C -0.047 4.047 6 C -0.260 4.260 7 C 0.396 3.604 8 O -0.458 6.458 9 N -0.334 5.334 10 C 0.000 4.000 11 C -0.169 4.169 12 C 0.060 3.940 13 H 0.081 0.919 14 N -0.379 5.379 15 C -0.368 4.368 16 H 0.074 0.926 17 C -0.254 4.254 18 N -0.632 5.632 19 Si 0.784 3.216 20 H -0.207 1.207 21 H -0.223 1.223 22 H -0.168 1.168 23 C -0.032 4.032 24 N -0.090 5.090 25 N -0.065 5.065 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.157 0.843 33 H 0.251 0.749 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.206 0.794 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -31.312 -10.724 6.464 33.723 hybrid contribution 0.926 0.160 -1.322 1.622 sum -30.386 -10.565 5.142 32.579 Atomic orbital electron populations 1.21678 0.92293 1.03071 1.03301 1.21781 0.98155 0.94302 1.03001 1.22667 0.69851 1.00610 1.07684 1.50851 1.10100 1.33448 1.18817 1.23788 0.88980 0.95845 0.96079 1.21214 0.94430 1.10132 1.00270 1.16792 0.81475 0.79366 0.82733 1.90780 1.86704 1.40851 1.27491 1.48310 1.04792 1.50623 1.29702 1.22087 0.95499 0.95331 0.87060 1.22989 0.93521 0.97857 1.02509 1.21450 0.82463 0.97986 0.92126 0.91945 1.42544 1.11397 1.04936 1.79009 1.19002 0.94893 0.87919 1.35018 0.92648 1.25559 0.97122 1.01405 1.01332 1.69890 1.10330 1.31220 1.51726 0.85382 0.77203 0.80250 0.78787 1.20677 1.22295 1.16759 1.22984 0.82391 0.99368 0.98455 1.74710 1.13442 1.10497 1.10361 1.81879 0.93461 1.18254 1.12884 0.91376 0.90986 0.91898 0.91898 0.91726 0.86729 0.84294 0.74867 0.90112 0.89939 0.87791 0.89658 0.79427 0.93268 0.92052 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.40 9.91 71.98 0.71 0.31 16 2 C -0.13 -0.88 6.14 30.59 0.19 -0.69 16 3 C 0.11 0.61 6.54 86.38 0.56 1.18 16 4 N -0.35 -5.29 3.69 -347.09 -1.28 -6.57 16 5 C 0.11 1.98 11.27 83.85 0.95 2.92 16 6 C -0.12 -3.17 6.85 40.81 0.28 -2.89 16 7 C 0.61 20.29 7.85 86.69 0.68 20.97 16 8 O -0.58 -22.50 17.12 -4.03 -0.07 -22.57 16 9 N -0.60 -20.01 3.33 -815.53 -2.71 -22.73 16 10 C 0.12 3.31 5.52 86.73 0.48 3.79 16 11 C -0.13 -3.63 6.59 31.88 0.21 -3.41 16 12 C 0.17 6.44 3.70 46.49 0.17 6.61 16 13 H 0.06 2.50 8.13 -2.38 -0.02 2.48 16 14 N -0.74 -33.74 5.08 -315.86 -1.61 -35.34 16 15 C -0.24 -13.53 10.47 84.04 0.88 -12.65 16 16 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 17 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 18 N -0.98 -63.31 13.97 21.65 0.30 -63.00 16 19 Si 0.96 44.99 27.74 68.60 1.90 46.89 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.24 -10.04 6.52 99.48 0.65 -9.39 16 23 C 0.09 3.61 6.59 86.86 0.57 4.18 16 24 N -0.22 -5.66 9.77 -50.00 -0.49 -6.15 16 25 N -0.08 -1.90 13.65 37.02 0.51 -1.40 16 26 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.07 0.05 8.14 -2.38 -0.02 0.03 16 28 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.14 -0.11 8.08 -2.39 -0.02 -0.12 16 33 H 0.24 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.08 2.08 7.62 -2.39 -0.02 2.07 16 35 H 0.08 2.07 7.73 -2.39 -0.02 2.05 16 36 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.08 2.23 8.01 -2.39 -0.02 2.21 16 38 H 0.37 15.96 5.58 -92.70 -0.52 15.44 16 39 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 40 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.05 2.16 8.03 -2.39 -0.02 2.14 16 Total: -1.00 -78.03 344.74 3.16 -74.87 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.46 Total: 18.92 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 6.15 Total: 17.08 kcal Atomic # 7 Polarization: -129.91 SS G_CDS: -5.28 Total: -135.19 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.07 Total: -22.57 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.89 kcal Total: -78.03 3.16 -74.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970360098.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.689 kcal (2) G-P(sol) polarization free energy of solvation -78.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds