Wall clock time and date at job start Tue Mar 31 2020 03:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36602 * 126.58235 * 2 1 4 4 C 1.47518 * 125.76742 * 0.03186 * 3 2 1 5 5 O 1.21593 * 120.00287 * 359.71728 * 4 3 2 6 6 N 1.34779 * 119.99852 * 179.71820 * 4 3 2 7 7 C 1.47424 * 125.64981 * 0.04465 * 6 4 3 8 8 C 1.54910 * 104.83272 * 204.09238 * 7 6 4 9 9 C 1.55160 * 101.58066 * 322.98680 * 8 7 6 10 10 H 1.08997 * 110.87259 * 277.07182 * 9 8 7 11 11 N 1.46499 * 110.71899 * 153.86642 * 9 8 7 12 12 C 1.46504 * 119.99903 * 305.02433 * 11 9 8 13 13 C 1.36933 * 120.00116 * 125.02768 * 11 9 8 14 14 H 1.08006 * 119.99951 * 334.73674 * 13 11 9 15 15 C 1.38815 * 120.00325 * 154.74051 * 13 11 9 16 16 N 1.31622 * 119.99508 * 4.29032 * 15 13 11 17 17 Si 1.86797 * 120.00036 * 184.28747 * 15 13 11 18 18 H 1.48500 * 109.47109 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46967 * 119.99833 * 17 15 13 20 20 H 1.48495 * 109.47304 * 239.99984 * 17 15 13 21 21 C 1.47027 * 125.64567 * 179.97438 * 6 4 3 22 22 N 1.34395 * 108.45564 * 179.77059 * 3 2 1 23 23 N 1.28760 * 109.52736 * 0.22351 * 22 3 2 24 24 N 1.34817 * 126.58198 * 180.15444 * 2 1 3 25 25 C 1.46504 * 126.59205 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.46675 * 90.00347 * 1 2 3 27 27 H 1.08998 * 109.47377 * 210.00866 * 1 2 3 28 28 H 1.09000 * 109.47180 * 330.00260 * 1 2 3 29 29 H 1.09002 * 110.36502 * 322.92893 * 7 6 4 30 30 H 1.08999 * 110.36758 * 85.14206 * 7 6 4 31 31 H 1.08997 * 111.00406 * 204.91220 * 8 7 6 32 32 H 1.08999 * 111.00441 * 81.06123 * 8 7 6 33 33 H 1.09008 * 109.46742 * 264.50863 * 12 11 9 34 34 H 1.09002 * 109.47415 * 24.50892 * 12 11 9 35 35 H 1.08999 * 109.46882 * 144.51636 * 12 11 9 36 36 H 0.97005 * 119.99235 * 180.02562 * 16 15 13 37 37 H 1.08992 * 109.88109 * 59.56043 * 21 6 4 38 38 H 1.09001 * 109.88021 * 298.39200 * 21 6 4 39 39 H 1.09000 * 109.47065 * 270.26451 * 25 24 2 40 40 H 1.09000 * 109.47226 * 30.26632 * 25 24 2 41 41 H 1.08998 * 109.47066 * 150.26798 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0007 5 8 0.6861 2.7628 -0.0039 6 7 2.7818 3.4987 0.0063 7 6 4.2460 3.3267 0.0113 8 6 4.7971 4.6366 0.6277 9 6 3.8219 5.6913 0.0410 10 1 4.1251 5.9837 -0.9643 11 7 3.7378 6.8629 0.9164 12 6 3.3820 6.6985 2.3280 13 6 3.9915 8.1117 0.4152 14 1 4.6243 8.2271 -0.4524 15 6 3.4355 9.2295 1.0223 16 7 2.7341 9.0972 2.1281 17 14 3.6829 10.9212 0.2697 18 1 4.5025 10.7997 -0.9626 19 1 2.3624 11.5094 -0.0705 20 1 4.3797 11.7991 1.2437 21 6 2.4760 4.9368 0.0071 22 7 3.5984 0.6788 0.0051 23 7 3.6299 -0.6084 0.0035 24 7 2.3105 -1.0826 -0.0029 25 6 1.8864 -2.4849 -0.0062 26 1 -0.3632 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 4.5253 2.4712 0.6263 30 1 4.6164 3.1988 -1.0058 31 1 5.8191 4.8236 0.2983 32 1 4.7373 4.6118 1.7157 33 1 2.3115 6.8610 2.4542 34 1 3.6371 5.6895 2.6519 35 1 3.9326 7.4229 2.9282 36 1 2.3453 9.8782 2.5521 37 1 1.8870 5.1900 0.8885 38 1 1.9263 5.1994 -0.8968 39 1 1.7771 -2.8338 1.0207 40 1 0.9315 -2.5745 -0.5240 41 1 2.6352 -3.0897 -0.5176 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971259795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:42 Heat of formation + Delta-G solvation = 101.790786 kcal Electronic energy + Delta-G solvation = -23811.550082 eV Core-core repulsion = 20344.249030 eV Total energy + Delta-G solvation = -3467.301052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.35819 -39.40586 -37.30402 -35.19660 -34.61441 -32.44329 -31.59004 -29.68270 -28.71820 -27.67781 -27.32461 -25.99012 -24.20110 -22.66026 -22.02248 -21.18038 -19.52516 -19.07071 -17.42257 -17.01407 -16.58988 -15.92021 -15.73487 -15.26450 -14.74771 -14.32906 -14.08663 -13.72235 -13.56870 -13.27756 -13.24078 -13.19587 -12.78226 -12.53507 -12.49524 -12.13743 -11.93531 -11.75210 -11.46001 -11.04239 -10.82830 -10.74568 -10.45659 -10.37661 -10.29241 -10.17687 -9.84738 -9.77191 -9.70512 -9.23002 -8.49367 -8.17587 -6.74270 -5.72798 -3.20428 0.98832 1.73245 1.85298 3.26171 3.39843 3.45387 3.46690 3.48331 4.08088 4.10881 4.43910 4.49515 4.59089 4.60626 4.85369 5.06232 5.20319 5.22832 5.34480 5.45606 5.48535 5.56407 5.70415 5.78653 5.79873 6.00231 6.08061 6.23157 6.25689 6.45432 6.52185 6.66810 6.76235 6.93458 6.98227 7.52140 7.79461 7.79844 7.88655 7.91028 8.39711 8.43811 9.25824 9.86145 10.36317 11.31308 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.037417 B = 0.003335 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.144351 B = 8393.227978 C = 8743.698501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.119 3.881 3 C -0.093 4.093 4 C 0.610 3.390 5 O -0.545 6.545 6 N -0.595 5.595 7 C 0.103 3.897 8 C -0.154 4.154 9 C 0.173 3.827 10 H 0.079 0.921 11 N -0.590 5.590 12 C 0.164 3.836 13 C -0.258 4.258 14 H 0.071 0.929 15 C 0.006 3.994 16 N -0.906 5.906 17 Si 0.905 3.095 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.089 3.911 22 N -0.198 5.198 23 N -0.075 5.075 24 N -0.368 5.368 25 C 0.089 3.911 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.025 0.975 34 H -0.004 1.004 35 H 0.054 0.946 36 H 0.252 0.748 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 -22.777 -3.963 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.019 4.019 3 C -0.233 4.233 4 C 0.396 3.604 5 O -0.423 6.423 6 N -0.327 5.327 7 C -0.020 4.020 8 C -0.195 4.195 9 C 0.062 3.938 10 H 0.097 0.903 11 N -0.310 5.310 12 C 0.019 3.981 13 C -0.388 4.388 14 H 0.089 0.911 15 C -0.192 4.192 16 N -0.551 5.551 17 Si 0.735 3.265 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.217 1.217 21 C -0.036 4.036 22 N -0.071 5.071 23 N -0.054 5.054 24 N -0.154 5.154 25 C -0.053 4.053 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.044 0.956 34 H 0.014 0.986 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.577 -22.942 -3.834 23.314 hybrid contribution -0.917 0.898 -0.343 1.328 sum -2.494 -22.044 -4.176 22.574 Atomic orbital electron populations 1.20709 0.84663 1.05409 1.04571 1.21903 0.96214 0.86290 0.97453 1.21265 0.88849 0.95485 1.17700 1.16350 0.84858 0.81827 0.77382 1.90749 1.15565 1.83328 1.52675 1.48296 1.07280 1.06800 1.70294 1.22502 0.78993 0.99396 1.01125 1.23379 1.00122 0.94314 1.01642 1.21376 0.90473 0.87005 0.94934 0.90325 1.43908 1.80506 1.01619 1.05016 1.20885 0.99072 0.94334 0.83759 1.19282 1.24054 0.82829 1.12591 0.91100 1.25190 0.97774 0.98547 0.97673 1.70116 1.37902 1.28499 1.18580 0.86167 0.77327 0.84262 0.78722 1.20275 1.21563 1.21735 1.22952 1.01251 0.77214 1.02142 1.74690 1.19083 1.03633 1.09678 1.81981 0.95976 1.03846 1.23644 1.50253 1.06566 1.07634 1.50965 1.22127 1.02348 0.76233 1.04570 0.89112 0.90815 0.86799 0.89473 0.91730 0.90463 0.90525 0.95643 0.98562 0.92687 0.93710 0.90739 0.92004 0.89399 0.88636 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 9.38 36.01 0.34 -0.48 16 2 C 0.12 1.40 7.02 -81.87 -0.57 0.83 16 3 C -0.09 -1.43 6.84 -83.55 -0.57 -2.00 16 4 C 0.61 10.86 7.85 -12.48 -0.10 10.76 16 5 O -0.55 -10.60 15.05 5.28 0.08 -10.52 16 6 N -0.60 -10.74 3.33 -171.75 -0.57 -11.32 16 7 C 0.10 1.65 6.12 -2.53 -0.02 1.63 16 8 C -0.15 -2.68 6.59 -24.58 -0.16 -2.84 16 9 C 0.17 3.54 3.44 -66.09 -0.23 3.31 16 10 H 0.08 1.58 7.94 -51.93 -0.41 1.17 16 11 N -0.59 -14.70 2.94 -171.38 -0.50 -15.20 16 12 C 0.16 4.09 7.70 59.85 0.46 4.55 16 13 C -0.26 -7.01 9.61 -15.06 -0.14 -7.16 16 14 H 0.07 1.87 7.82 -52.48 -0.41 1.46 16 15 C 0.01 0.18 5.38 -17.43 -0.09 0.09 16 16 N -0.91 -26.32 10.11 55.49 0.56 -25.76 16 17 Si 0.91 21.76 29.56 -169.99 -5.02 16.73 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 C 0.09 1.79 6.51 -3.06 -0.02 1.77 16 22 N -0.20 -3.02 9.39 32.85 0.31 -2.71 16 23 N -0.08 -1.02 13.78 60.35 0.83 -0.19 16 24 N -0.37 -3.77 4.03 -63.59 -0.26 -4.02 16 25 C 0.09 0.39 11.17 59.85 0.67 1.06 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.39 7.84 -51.93 -0.41 -0.02 16 28 H 0.11 1.25 6.43 -51.93 -0.33 0.92 16 29 H 0.09 1.37 6.13 -51.93 -0.32 1.05 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.08 1.42 6.14 -51.93 -0.32 1.10 16 33 H 0.03 0.69 7.38 -51.92 -0.38 0.31 16 34 H 0.00 -0.09 6.13 -51.93 -0.32 -0.41 16 35 H 0.05 1.49 7.02 -51.93 -0.36 1.12 16 36 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.07 1.68 7.07 -51.93 -0.37 1.32 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.10 0.19 7.78 -51.93 -0.40 -0.21 16 41 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -33.33 331.98 -5.72 -39.05 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -5.71 Total: -2.58 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -0.44 Total: 11.52 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.37 Total: -59.20 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.33 -5.72 -39.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971259795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.844 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds