Wall clock time and date at job start Tue Mar 31 2020 03:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36602 * 126.58235 * 2 1 4 4 C 1.47518 * 125.76742 * 0.03186 * 3 2 1 5 5 O 1.21593 * 120.00287 * 359.71728 * 4 3 2 6 6 N 1.34779 * 119.99852 * 179.71820 * 4 3 2 7 7 C 1.47424 * 125.64981 * 0.04465 * 6 4 3 8 8 C 1.54910 * 104.83272 * 204.09238 * 7 6 4 9 9 C 1.55160 * 101.58066 * 322.98680 * 8 7 6 10 10 H 1.08997 * 110.87259 * 277.07182 * 9 8 7 11 11 N 1.46499 * 110.71899 * 153.86642 * 9 8 7 12 12 C 1.46504 * 119.99903 * 305.02433 * 11 9 8 13 13 C 1.36933 * 120.00116 * 125.02768 * 11 9 8 14 14 H 1.08006 * 119.99951 * 334.73674 * 13 11 9 15 15 C 1.38815 * 120.00325 * 154.74051 * 13 11 9 16 16 N 1.31622 * 119.99508 * 4.29032 * 15 13 11 17 17 Si 1.86797 * 120.00036 * 184.28747 * 15 13 11 18 18 H 1.48500 * 109.47109 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46967 * 119.99833 * 17 15 13 20 20 H 1.48495 * 109.47304 * 239.99984 * 17 15 13 21 21 C 1.47027 * 125.64567 * 179.97438 * 6 4 3 22 22 N 1.34395 * 108.45564 * 179.77059 * 3 2 1 23 23 N 1.28760 * 109.52736 * 0.22351 * 22 3 2 24 24 N 1.34817 * 126.58198 * 180.15444 * 2 1 3 25 25 C 1.46504 * 126.59205 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.46675 * 90.00347 * 1 2 3 27 27 H 1.08998 * 109.47377 * 210.00866 * 1 2 3 28 28 H 1.09000 * 109.47180 * 330.00260 * 1 2 3 29 29 H 1.09002 * 110.36502 * 322.92893 * 7 6 4 30 30 H 1.08999 * 110.36758 * 85.14206 * 7 6 4 31 31 H 1.08997 * 111.00406 * 204.91220 * 8 7 6 32 32 H 1.08999 * 111.00441 * 81.06123 * 8 7 6 33 33 H 1.09008 * 109.46742 * 264.50863 * 12 11 9 34 34 H 1.09002 * 109.47415 * 24.50892 * 12 11 9 35 35 H 1.08999 * 109.46882 * 144.51636 * 12 11 9 36 36 H 0.97005 * 119.99235 * 180.02562 * 16 15 13 37 37 H 1.08992 * 109.88109 * 59.56043 * 21 6 4 38 38 H 1.09001 * 109.88021 * 298.39200 * 21 6 4 39 39 H 1.09000 * 109.47065 * 270.26451 * 25 24 2 40 40 H 1.09000 * 109.47226 * 30.26632 * 25 24 2 41 41 H 1.08998 * 109.47066 * 150.26798 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0007 5 8 0.6861 2.7628 -0.0039 6 7 2.7818 3.4987 0.0063 7 6 4.2460 3.3267 0.0113 8 6 4.7971 4.6366 0.6277 9 6 3.8219 5.6913 0.0410 10 1 4.1251 5.9837 -0.9643 11 7 3.7378 6.8629 0.9164 12 6 3.3820 6.6985 2.3280 13 6 3.9915 8.1117 0.4152 14 1 4.6243 8.2271 -0.4524 15 6 3.4355 9.2295 1.0223 16 7 2.7341 9.0972 2.1281 17 14 3.6829 10.9212 0.2697 18 1 4.5025 10.7997 -0.9626 19 1 2.3624 11.5094 -0.0705 20 1 4.3797 11.7991 1.2437 21 6 2.4760 4.9368 0.0071 22 7 3.5984 0.6788 0.0051 23 7 3.6299 -0.6084 0.0035 24 7 2.3105 -1.0826 -0.0029 25 6 1.8864 -2.4849 -0.0062 26 1 -0.3632 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 4.5253 2.4712 0.6263 30 1 4.6164 3.1988 -1.0058 31 1 5.8191 4.8236 0.2983 32 1 4.7373 4.6118 1.7157 33 1 2.3115 6.8610 2.4542 34 1 3.6371 5.6895 2.6519 35 1 3.9326 7.4229 2.9282 36 1 2.3453 9.8782 2.5521 37 1 1.8870 5.1900 0.8885 38 1 1.9263 5.1994 -0.8968 39 1 1.7771 -2.8338 1.0207 40 1 0.9315 -2.5745 -0.5240 41 1 2.6352 -3.0897 -0.5176 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971259795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:39 Heat of formation + Delta-G solvation = 78.677346 kcal Electronic energy + Delta-G solvation = -23812.552356 eV Core-core repulsion = 20344.249030 eV Total energy + Delta-G solvation = -3468.303326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.32303 -40.84469 -38.86490 -36.61130 -35.84734 -33.53411 -33.23070 -31.30942 -29.92919 -28.62004 -28.32149 -28.05829 -25.66042 -24.27006 -23.34663 -22.08361 -20.89103 -20.61851 -18.96599 -18.58074 -17.64422 -17.29633 -16.94416 -16.72143 -16.31158 -15.58821 -15.27839 -15.00845 -14.89670 -14.45498 -14.29901 -14.21032 -13.96849 -13.92658 -13.80082 -13.37403 -13.23674 -13.17453 -12.86292 -12.74751 -12.50778 -12.36757 -12.22488 -12.08593 -12.01487 -11.75435 -11.38588 -11.15142 -11.11223 -10.60391 -10.27047 -9.62391 -8.77936 -7.83142 -5.33070 0.09101 0.58116 1.12468 1.48396 1.50301 1.60400 1.92165 2.16907 2.51589 3.11272 3.30793 3.37325 3.59767 3.62591 3.67534 3.88146 4.03006 4.30582 4.33071 4.35573 4.40910 4.48299 4.58715 4.64073 4.66714 4.74580 4.82011 4.82983 4.96853 5.05173 5.11179 5.22178 5.26422 5.36330 5.45548 5.52156 5.66797 5.77314 6.34459 6.46345 6.80699 7.06980 7.16353 7.84680 8.31100 9.20467 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.037417 B = 0.003335 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.144351 B = 8393.227978 C = 8743.698501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.133 3.867 3 C -0.127 4.127 4 C 0.607 3.393 5 O -0.570 6.570 6 N -0.601 5.601 7 C 0.114 3.886 8 C -0.141 4.141 9 C 0.168 3.832 10 H 0.086 0.914 11 N -0.605 5.605 12 C 0.185 3.815 13 C -0.265 4.265 14 H 0.080 0.920 15 C -0.051 4.051 16 N -0.939 5.939 17 Si 0.972 3.028 18 H -0.262 1.262 19 H -0.294 1.294 20 H -0.292 1.292 21 C 0.102 3.898 22 N -0.217 5.217 23 N -0.091 5.091 24 N -0.352 5.352 25 C 0.072 3.928 26 H 0.106 0.894 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.064 0.936 33 H -0.006 1.006 34 H 0.020 0.980 35 H 0.028 0.972 36 H 0.247 0.753 37 H 0.043 0.957 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 -25.373 -5.203 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.007 4.007 3 C -0.267 4.267 4 C 0.395 3.605 5 O -0.450 6.450 6 N -0.333 5.333 7 C -0.008 4.008 8 C -0.181 4.181 9 C 0.059 3.941 10 H 0.104 0.896 11 N -0.326 5.326 12 C 0.040 3.960 13 C -0.395 4.395 14 H 0.098 0.902 15 C -0.246 4.246 16 N -0.586 5.586 17 Si 0.800 3.200 18 H -0.186 1.186 19 H -0.221 1.221 20 H -0.219 1.219 21 C -0.023 4.023 22 N -0.090 5.090 23 N -0.071 5.071 24 N -0.138 5.138 25 C -0.066 4.066 26 H 0.124 0.876 27 H 0.134 0.866 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.012 0.988 34 H 0.038 0.962 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.213 -25.615 -5.100 26.145 hybrid contribution -1.069 1.495 0.027 1.838 sum -2.282 -24.120 -5.073 24.753 Atomic orbital electron populations 1.20812 0.82359 1.06157 1.05725 1.22269 0.97380 0.85726 0.95293 1.21038 0.89936 0.94756 1.20990 1.16743 0.84458 0.82874 0.76423 1.90725 1.16548 1.84031 1.53681 1.48331 1.08330 1.05816 1.70821 1.22510 0.77579 0.98628 1.02077 1.23255 1.00397 0.93635 1.00782 1.21539 0.91359 0.86357 0.94841 0.89572 1.44070 1.80703 1.02438 1.05404 1.20506 0.96619 0.94705 0.84147 1.19665 1.23643 0.83850 1.12325 0.90249 1.25975 0.98154 1.02247 0.98215 1.70302 1.39344 1.29025 1.19919 0.85124 0.76907 0.79705 0.78245 1.18649 1.22143 1.21896 1.22538 1.00433 0.79058 1.00308 1.74619 1.19349 1.04546 1.10495 1.81868 0.97926 1.03201 1.24055 1.50596 1.05162 1.09284 1.48745 1.22734 1.04237 0.73011 1.06645 0.87564 0.86640 0.89402 0.88773 0.90071 0.88364 0.91693 0.98768 0.96193 0.95275 0.94304 0.93900 0.92678 0.87335 0.85453 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.33 9.38 71.24 0.67 -0.67 16 2 C 0.13 2.84 7.02 41.72 0.29 3.13 16 3 C -0.13 -3.78 6.84 40.82 0.28 -3.50 16 4 C 0.61 21.75 7.85 86.69 0.68 22.43 16 5 O -0.57 -22.63 15.05 -4.01 -0.06 -22.69 16 6 N -0.60 -21.78 3.33 -815.54 -2.71 -24.50 16 7 C 0.11 3.53 6.12 86.86 0.53 4.06 16 8 C -0.14 -4.74 6.59 31.99 0.21 -4.53 16 9 C 0.17 6.87 3.44 46.18 0.16 7.03 16 10 H 0.09 3.39 7.94 -2.39 -0.02 3.37 16 11 N -0.60 -30.61 2.94 -696.11 -2.05 -32.66 16 12 C 0.18 9.58 7.70 127.77 0.98 10.56 16 13 C -0.27 -14.48 9.61 84.03 0.81 -13.68 16 14 H 0.08 4.12 7.82 -2.91 -0.02 4.10 16 15 C -0.05 -2.88 5.38 84.86 0.46 -2.42 16 16 N -0.94 -56.32 10.11 21.65 0.22 -56.10 16 17 Si 0.97 45.24 29.56 68.60 2.03 47.27 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 21 C 0.10 4.20 6.51 86.73 0.56 4.77 16 22 N -0.22 -6.39 9.39 -50.00 -0.47 -6.86 16 23 N -0.09 -2.29 13.78 37.02 0.51 -1.78 16 24 N -0.35 -6.16 4.03 -355.08 -1.43 -7.59 16 25 C 0.07 0.32 11.17 127.77 1.43 1.75 16 26 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.12 0.69 7.84 -2.39 -0.02 0.67 16 28 H 0.09 1.84 6.43 -2.39 -0.02 1.83 16 29 H 0.09 2.85 6.13 -2.39 -0.01 2.83 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.06 2.35 6.14 -2.39 -0.01 2.34 16 33 H -0.01 -0.35 7.38 -2.38 -0.02 -0.37 16 34 H 0.02 0.91 6.13 -2.39 -0.01 0.90 16 35 H 0.03 1.62 7.02 -2.39 -0.02 1.60 16 36 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 37 H 0.04 2.03 7.07 -2.39 -0.02 2.01 16 38 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.13 -0.17 7.78 -2.39 -0.02 -0.19 16 41 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -75.02 331.98 4.14 -70.88 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 1.04 Total: 5.10 kcal Atomic # 6 Polarization: 21.88 SS G_CDS: 7.06 Total: 28.94 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -5.93 Total: -129.49 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.06 Total: -22.69 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -75.02 4.14 -70.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971259795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.559 kcal (2) G-P(sol) polarization free energy of solvation -75.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds