Wall clock time and date at job start Tue Mar 31 2020 03:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36598 * 126.57875 * 2 1 4 4 C 1.47530 * 125.76846 * 0.04507 * 3 2 1 5 5 O 1.21596 * 120.00248 * 359.70988 * 4 3 2 6 6 N 1.34777 * 119.99664 * 179.71277 * 4 3 2 7 7 C 1.47419 * 125.64961 * 359.97438 * 6 4 3 8 8 C 1.54920 * 104.83230 * 155.90368 * 7 6 4 9 9 C 1.55152 * 101.57872 * 37.00762 * 8 7 6 10 10 H 1.09000 * 110.72149 * 83.03897 * 9 8 7 11 11 N 1.46500 * 110.72046 * 206.13443 * 9 8 7 12 12 C 1.46496 * 119.99862 * 57.56066 * 11 9 8 13 13 C 1.36941 * 120.00129 * 237.56070 * 11 9 8 14 14 H 1.08000 * 120.00059 * 336.20250 * 13 11 9 15 15 C 1.38810 * 120.00011 * 156.20248 * 13 11 9 16 16 N 1.31622 * 119.99870 * 330.80202 * 15 13 11 17 17 Si 1.86801 * 120.00077 * 150.80964 * 15 13 11 18 18 H 1.48500 * 109.46572 * 269.99694 * 17 15 13 19 19 H 1.48492 * 109.46926 * 29.99691 * 17 15 13 20 20 H 1.48500 * 109.46993 * 149.99833 * 17 15 13 21 21 C 1.47320 * 125.60991 * 180.19107 * 6 4 3 22 22 N 1.34396 * 108.45992 * 179.77851 * 3 2 1 23 23 N 1.28756 * 109.52216 * 0.22745 * 22 3 2 24 24 N 1.34809 * 126.58237 * 180.17431 * 2 1 3 25 25 C 1.46501 * 126.59568 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.46958 * 90.00015 * 1 2 3 27 27 H 1.09005 * 109.46845 * 209.99512 * 1 2 3 28 28 H 1.08991 * 109.47108 * 329.99507 * 1 2 3 29 29 H 1.08997 * 110.37242 * 37.06613 * 7 6 4 30 30 H 1.09000 * 110.46044 * 274.78764 * 7 6 4 31 31 H 1.08998 * 111.00208 * 278.93831 * 8 7 6 32 32 H 1.08997 * 111.03537 * 155.09203 * 8 7 6 33 33 H 1.09001 * 109.47066 * 272.88183 * 12 11 9 34 34 H 1.09000 * 109.47494 * 32.88378 * 12 11 9 35 35 H 1.08998 * 109.47352 * 152.88731 * 12 11 9 36 36 H 0.96998 * 119.99992 * 353.71520 * 16 15 13 37 37 H 1.08998 * 110.06203 * 61.69161 * 21 6 4 38 38 H 1.08997 * 109.85747 * 300.41961 * 21 6 4 39 39 H 1.08994 * 109.47061 * 270.24631 * 25 24 2 40 40 H 1.09000 * 109.46932 * 30.24963 * 25 24 2 41 41 H 1.09005 * 109.46951 * 150.24703 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5028 0.0009 5 8 0.6859 2.7628 -0.0035 6 7 2.7816 3.4988 0.0067 7 6 4.2457 3.3268 0.0129 8 6 4.8018 4.6393 -0.5938 9 6 3.8218 5.6915 -0.0110 10 1 4.1201 5.9796 0.9971 11 7 3.7447 6.8666 -0.8824 12 6 3.3454 6.7144 -2.2837 13 6 4.0458 8.1073 -0.3871 14 1 3.9640 8.3003 0.6723 15 6 4.4563 9.1169 -1.2468 16 7 5.0973 8.8163 -2.3564 17 14 4.0991 10.9022 -0.8289 18 1 2.7845 11.2907 -1.3999 19 1 4.0666 11.0681 0.6464 20 1 5.1623 11.7667 -1.4010 21 6 2.4743 4.9396 0.0123 22 7 3.5984 0.6790 0.0049 23 7 3.6299 -0.6082 0.0032 24 7 2.3105 -1.0825 -0.0033 25 6 1.8865 -2.4848 -0.0070 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 4.5302 2.4738 -0.6031 30 1 4.6096 3.1959 1.0320 31 1 4.7509 4.6187 -1.6824 32 1 5.8212 4.8254 -0.2557 33 1 4.2239 6.4932 -2.8898 34 1 2.6289 5.8976 -2.3707 35 1 2.8864 7.6391 -2.6332 36 1 5.3632 7.8997 -2.5298 37 1 1.9199 5.2002 0.9139 38 1 1.8909 5.1972 -0.8717 39 1 1.7775 -2.8342 1.0196 40 1 0.9314 -2.5742 -0.5247 41 1 2.6352 -3.0894 -0.5190 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971259796.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:44 Heat of formation + Delta-G solvation = 96.695756 kcal Electronic energy + Delta-G solvation = -23823.737784 eV Core-core repulsion = 20356.215795 eV Total energy + Delta-G solvation = -3467.521989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.41658 -39.51089 -37.43766 -35.30427 -34.84321 -32.50822 -31.62605 -29.73789 -28.77329 -27.73017 -27.38384 -26.12932 -24.20638 -22.61791 -21.98596 -21.24703 -19.64234 -19.19956 -17.55196 -17.47738 -16.67039 -16.00386 -15.90887 -15.32611 -14.46344 -14.38549 -13.93595 -13.81583 -13.74337 -13.47742 -13.38266 -13.31601 -13.04759 -12.85933 -12.63078 -12.18363 -11.96864 -11.84135 -11.44529 -11.16558 -10.77156 -10.72082 -10.62440 -10.52565 -10.43223 -10.07064 -9.99220 -9.87810 -9.43290 -9.29408 -8.35008 -8.28808 -6.96036 -6.06405 -3.20657 0.93316 1.66416 1.80254 3.15581 3.36120 3.54248 3.55639 3.72303 4.02168 4.06106 4.37587 4.52650 4.55202 4.60951 4.81515 5.00556 5.09636 5.17288 5.26448 5.39628 5.40871 5.45674 5.60827 5.69812 5.72193 5.85802 5.94976 6.15272 6.17771 6.30012 6.44334 6.52247 6.60453 6.67556 6.86293 6.93231 7.14906 7.70729 7.82239 7.99779 8.30409 8.57088 9.10763 9.84759 10.23098 11.20969 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.039422 B = 0.003293 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.091374 B = 8499.912879 C = 8859.884671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.120 3.880 3 C -0.095 4.095 4 C 0.612 3.388 5 O -0.546 6.546 6 N -0.596 5.596 7 C 0.102 3.898 8 C -0.153 4.153 9 C 0.172 3.828 10 H 0.081 0.919 11 N -0.589 5.589 12 C 0.132 3.868 13 C -0.362 4.362 14 H 0.061 0.939 15 C -0.018 4.018 16 N -0.910 5.910 17 Si 1.064 2.936 18 H -0.293 1.293 19 H -0.292 1.292 20 H -0.291 1.291 21 C 0.090 3.910 22 N -0.197 5.197 23 N -0.074 5.074 24 N -0.368 5.368 25 C 0.088 3.912 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.012 0.988 34 H 0.018 0.982 35 H 0.052 0.948 36 H 0.271 0.729 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.562 -22.584 4.703 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.018 4.018 3 C -0.235 4.235 4 C 0.398 3.602 5 O -0.424 6.424 6 N -0.327 5.327 7 C -0.021 4.021 8 C -0.194 4.194 9 C 0.062 3.938 10 H 0.099 0.901 11 N -0.310 5.310 12 C -0.013 4.013 13 C -0.490 4.490 14 H 0.078 0.922 15 C -0.222 4.222 16 N -0.549 5.549 17 Si 0.894 3.106 18 H -0.220 1.220 19 H -0.218 1.218 20 H -0.217 1.217 21 C -0.034 4.034 22 N -0.070 5.070 23 N -0.053 5.053 24 N -0.154 5.154 25 C -0.053 4.053 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.131 0.869 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.030 0.970 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.630 -21.318 4.132 22.704 hybrid contribution -0.927 -1.675 0.567 1.997 sum -7.557 -22.993 4.699 24.655 Atomic orbital electron populations 1.20709 0.84640 1.05349 1.04642 1.21896 0.96214 0.86290 0.97393 1.21217 0.88905 0.95391 1.17948 1.16332 0.84778 0.81856 0.77230 1.90745 1.15539 1.83374 1.52743 1.48309 1.07408 1.06573 1.70436 1.22524 0.78773 0.99506 1.01289 1.23397 1.00475 0.94193 1.01323 1.21354 0.90149 0.86768 0.95510 0.90103 1.43916 1.77516 1.02605 1.06957 1.20965 0.96139 0.98867 0.85322 1.19998 1.46146 0.87800 0.95090 0.92164 1.25769 0.95944 1.04075 0.96377 1.70747 1.33084 1.22297 1.28771 0.83546 0.76372 0.75808 0.74904 1.22038 1.21825 1.21727 1.22794 1.00738 0.77720 1.02118 1.74701 1.19036 1.03673 1.09637 1.81998 0.95958 1.03801 1.23532 1.50265 1.06558 1.07664 1.50875 1.22138 1.02407 0.76184 1.04577 0.89053 0.90778 0.86868 0.89375 0.91624 0.91002 0.90337 0.96998 0.96313 0.92875 0.91812 0.91722 0.90772 0.89377 0.88601 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 9.38 36.01 0.34 -0.43 16 2 C 0.12 1.37 7.02 -81.88 -0.57 0.79 16 3 C -0.10 -1.42 6.84 -83.55 -0.57 -1.99 16 4 C 0.61 10.54 7.85 -12.47 -0.10 10.44 16 5 O -0.55 -10.14 15.05 5.28 0.08 -10.06 16 6 N -0.60 -10.47 3.33 -171.50 -0.57 -11.04 16 7 C 0.10 1.65 6.12 -2.53 -0.02 1.64 16 8 C -0.15 -2.79 6.65 -24.58 -0.16 -2.95 16 9 C 0.17 3.54 3.43 -66.10 -0.23 3.31 16 10 H 0.08 1.67 7.94 -51.93 -0.41 1.26 16 11 N -0.59 -14.56 2.81 -171.39 -0.48 -15.04 16 12 C 0.13 3.17 7.80 59.84 0.47 3.64 16 13 C -0.36 -9.98 9.41 -15.06 -0.14 -10.12 16 14 H 0.06 1.67 7.97 -52.49 -0.42 1.25 16 15 C -0.02 -0.52 4.62 -17.43 -0.08 -0.60 16 16 N -0.91 -27.14 12.71 55.49 0.71 -26.44 16 17 Si 1.06 25.29 30.01 -169.99 -5.10 20.19 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 C 0.09 1.72 6.47 -2.90 -0.02 1.71 16 22 N -0.20 -3.00 9.39 32.85 0.31 -2.69 16 23 N -0.07 -0.99 13.78 60.35 0.83 -0.16 16 24 N -0.37 -3.68 4.03 -63.59 -0.26 -3.94 16 25 C 0.09 0.37 11.18 59.85 0.67 1.04 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.35 7.84 -51.93 -0.41 -0.06 16 28 H 0.11 1.16 6.43 -51.93 -0.33 0.83 16 29 H 0.09 1.40 6.14 -51.93 -0.32 1.09 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.39 7.12 -51.93 -0.37 1.02 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.01 0.30 6.69 -51.93 -0.35 -0.05 16 34 H 0.02 0.40 6.23 -51.93 -0.32 0.08 16 35 H 0.05 1.38 7.27 -51.93 -0.38 1.00 16 36 H 0.27 8.12 6.38 -40.82 -0.26 7.86 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.53 6.08 -51.93 -0.32 1.22 16 39 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.10 0.17 7.78 -51.93 -0.40 -0.23 16 41 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 331.92 15.07 5.00 5.00 Total: -1.00 -33.88 331.92 -5.52 -39.40 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.62 Total: -1.69 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -0.42 Total: 6.47 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.54 Total: -59.31 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.10 Total: 20.19 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.88 -5.52 -39.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971259796.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.094 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds