Wall clock time and date at job start Tue Mar 31 2020 03:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36598 * 126.57875 * 2 1 4 4 C 1.47530 * 125.76846 * 0.04507 * 3 2 1 5 5 O 1.21596 * 120.00248 * 359.70988 * 4 3 2 6 6 N 1.34777 * 119.99664 * 179.71277 * 4 3 2 7 7 C 1.47419 * 125.64961 * 359.97438 * 6 4 3 8 8 C 1.54920 * 104.83230 * 155.90368 * 7 6 4 9 9 C 1.55152 * 101.57872 * 37.00762 * 8 7 6 10 10 H 1.09000 * 110.72149 * 83.03897 * 9 8 7 11 11 N 1.46500 * 110.72046 * 206.13443 * 9 8 7 12 12 C 1.46496 * 119.99862 * 57.56066 * 11 9 8 13 13 C 1.36941 * 120.00129 * 237.56070 * 11 9 8 14 14 H 1.08000 * 120.00059 * 336.20250 * 13 11 9 15 15 C 1.38810 * 120.00011 * 156.20248 * 13 11 9 16 16 N 1.31622 * 119.99870 * 330.80202 * 15 13 11 17 17 Si 1.86801 * 120.00077 * 150.80964 * 15 13 11 18 18 H 1.48500 * 109.46572 * 269.99694 * 17 15 13 19 19 H 1.48492 * 109.46926 * 29.99691 * 17 15 13 20 20 H 1.48500 * 109.46993 * 149.99833 * 17 15 13 21 21 C 1.47320 * 125.60991 * 180.19107 * 6 4 3 22 22 N 1.34396 * 108.45992 * 179.77851 * 3 2 1 23 23 N 1.28756 * 109.52216 * 0.22745 * 22 3 2 24 24 N 1.34809 * 126.58237 * 180.17431 * 2 1 3 25 25 C 1.46501 * 126.59568 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.46958 * 90.00015 * 1 2 3 27 27 H 1.09005 * 109.46845 * 209.99512 * 1 2 3 28 28 H 1.08991 * 109.47108 * 329.99507 * 1 2 3 29 29 H 1.08997 * 110.37242 * 37.06613 * 7 6 4 30 30 H 1.09000 * 110.46044 * 274.78764 * 7 6 4 31 31 H 1.08998 * 111.00208 * 278.93831 * 8 7 6 32 32 H 1.08997 * 111.03537 * 155.09203 * 8 7 6 33 33 H 1.09001 * 109.47066 * 272.88183 * 12 11 9 34 34 H 1.09000 * 109.47494 * 32.88378 * 12 11 9 35 35 H 1.08998 * 109.47352 * 152.88731 * 12 11 9 36 36 H 0.96998 * 119.99992 * 353.71520 * 16 15 13 37 37 H 1.08998 * 110.06203 * 61.69161 * 21 6 4 38 38 H 1.08997 * 109.85747 * 300.41961 * 21 6 4 39 39 H 1.08994 * 109.47061 * 270.24631 * 25 24 2 40 40 H 1.09000 * 109.46932 * 30.24963 * 25 24 2 41 41 H 1.09005 * 109.46951 * 150.24703 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5028 0.0009 5 8 0.6859 2.7628 -0.0035 6 7 2.7816 3.4988 0.0067 7 6 4.2457 3.3268 0.0129 8 6 4.8018 4.6393 -0.5938 9 6 3.8218 5.6915 -0.0110 10 1 4.1201 5.9796 0.9971 11 7 3.7447 6.8666 -0.8824 12 6 3.3454 6.7144 -2.2837 13 6 4.0458 8.1073 -0.3871 14 1 3.9640 8.3003 0.6723 15 6 4.4563 9.1169 -1.2468 16 7 5.0973 8.8163 -2.3564 17 14 4.0991 10.9022 -0.8289 18 1 2.7845 11.2907 -1.3999 19 1 4.0666 11.0681 0.6464 20 1 5.1623 11.7667 -1.4010 21 6 2.4743 4.9396 0.0123 22 7 3.5984 0.6790 0.0049 23 7 3.6299 -0.6082 0.0032 24 7 2.3105 -1.0825 -0.0033 25 6 1.8865 -2.4848 -0.0070 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 4.5302 2.4738 -0.6031 30 1 4.6096 3.1959 1.0320 31 1 4.7509 4.6187 -1.6824 32 1 5.8212 4.8254 -0.2557 33 1 4.2239 6.4932 -2.8898 34 1 2.6289 5.8976 -2.3707 35 1 2.8864 7.6391 -2.6332 36 1 5.3632 7.8997 -2.5298 37 1 1.9199 5.2002 0.9139 38 1 1.8909 5.1972 -0.8717 39 1 1.7775 -2.8342 1.0196 40 1 0.9314 -2.5742 -0.5247 41 1 2.6352 -3.0894 -0.5190 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971259796.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:43 Heat of formation + Delta-G solvation = 73.333870 kcal Electronic energy + Delta-G solvation = -23824.750831 eV Core-core repulsion = 20356.215795 eV Total energy + Delta-G solvation = -3468.535036 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.35713 -40.92389 -38.98983 -36.86559 -35.90081 -33.56929 -33.24214 -31.38296 -29.95784 -28.69815 -28.34763 -28.11684 -25.63345 -24.19877 -23.39361 -22.13755 -21.05263 -20.67974 -19.52470 -18.65705 -17.71418 -17.32245 -17.00154 -16.58050 -15.99277 -15.84714 -15.41795 -15.25664 -15.03422 -14.80191 -14.35588 -14.25404 -14.03511 -13.95225 -13.83634 -13.50866 -13.27320 -13.06996 -12.96196 -12.67987 -12.55706 -12.46550 -12.38511 -12.07231 -11.86186 -11.73622 -11.38918 -11.21770 -11.13641 -10.45607 -10.30588 -9.69321 -9.02305 -8.25695 -5.37877 0.06395 0.53965 1.09876 1.61617 1.68064 1.83865 1.86319 2.12147 2.66854 3.06369 3.18314 3.32961 3.44730 3.59879 3.63170 3.76258 3.92061 4.17183 4.24377 4.32533 4.33784 4.36352 4.51663 4.57538 4.62023 4.64747 4.70736 4.77869 4.82055 4.90202 4.93855 5.06512 5.07331 5.16107 5.19814 5.29682 5.49546 5.84371 6.37212 6.39286 6.76100 7.00350 7.03823 7.75748 8.15136 8.99921 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.039422 B = 0.003293 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.091374 B = 8499.912879 C = 8859.884671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.134 3.866 3 C -0.130 4.130 4 C 0.611 3.389 5 O -0.565 6.565 6 N -0.602 5.602 7 C 0.118 3.882 8 C -0.143 4.143 9 C 0.167 3.833 10 H 0.080 0.920 11 N -0.604 5.604 12 C 0.148 3.852 13 C -0.365 4.365 14 H 0.058 0.942 15 C -0.069 4.069 16 N -0.937 5.937 17 Si 1.113 2.887 18 H -0.286 1.286 19 H -0.272 1.272 20 H -0.295 1.295 21 C 0.104 3.896 22 N -0.220 5.220 23 N -0.092 5.092 24 N -0.352 5.352 25 C 0.072 3.928 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.000 1.000 34 H 0.039 0.961 35 H 0.027 0.973 36 H 0.257 0.743 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.777 -24.921 5.657 27.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.005 4.005 3 C -0.270 4.270 4 C 0.399 3.601 5 O -0.444 6.444 6 N -0.334 5.334 7 C -0.005 4.005 8 C -0.183 4.183 9 C 0.059 3.941 10 H 0.098 0.902 11 N -0.326 5.326 12 C 0.003 3.997 13 C -0.494 4.494 14 H 0.075 0.925 15 C -0.266 4.266 16 N -0.579 5.579 17 Si 0.938 3.062 18 H -0.213 1.213 19 H -0.197 1.197 20 H -0.222 1.222 21 C -0.020 4.020 22 N -0.093 5.093 23 N -0.072 5.072 24 N -0.138 5.138 25 C -0.067 4.067 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.018 0.982 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.128 0.872 40 H 0.146 0.854 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.845 -23.734 5.113 25.514 hybrid contribution -0.625 -1.160 0.308 1.353 sum -8.470 -24.894 5.421 26.848 Atomic orbital electron populations 1.20828 0.82161 1.06336 1.05710 1.22297 0.97439 0.85635 0.95144 1.21067 0.89880 0.94890 1.21121 1.16669 0.84408 0.82720 0.76319 1.90724 1.16225 1.83961 1.53539 1.48341 1.08046 1.05898 1.71107 1.22434 0.77902 0.98225 1.01945 1.23243 1.00252 0.94461 1.00391 1.21466 0.91655 0.86207 0.94821 0.90209 1.44059 1.77800 1.03250 1.07455 1.20732 0.95770 0.98156 0.85030 1.20233 1.44954 0.89166 0.95071 0.92459 1.27069 0.95675 1.07734 0.96159 1.70866 1.35389 1.21451 1.30155 0.82879 0.76079 0.71391 0.75826 1.21325 1.19689 1.22175 1.22428 0.99323 0.78944 1.01314 1.74633 1.19516 1.04612 1.10536 1.81885 0.98006 1.03183 1.24117 1.50615 1.05157 1.09351 1.48651 1.22741 1.04207 0.72983 1.06720 0.87725 0.86555 0.89060 0.88782 0.90263 0.92365 0.89761 0.98245 0.94248 0.95430 0.93250 0.91634 0.92504 0.87157 0.85416 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.38 71.24 0.67 -0.54 16 2 C 0.13 2.76 7.02 41.72 0.29 3.05 16 3 C -0.13 -3.75 6.84 40.82 0.28 -3.47 16 4 C 0.61 20.84 7.85 86.69 0.68 21.52 16 5 O -0.57 -20.87 15.05 -4.02 -0.06 -20.93 16 6 N -0.60 -21.05 3.33 -814.77 -2.72 -23.77 16 7 C 0.12 3.74 6.12 86.86 0.53 4.27 16 8 C -0.14 -5.22 6.65 31.99 0.21 -5.01 16 9 C 0.17 6.92 3.43 46.18 0.16 7.08 16 10 H 0.08 3.31 7.94 -2.39 -0.02 3.29 16 11 N -0.60 -30.37 2.81 -696.16 -1.95 -32.32 16 12 C 0.15 7.32 7.80 127.77 1.00 8.31 16 13 C -0.37 -20.34 9.41 84.03 0.79 -19.55 16 14 H 0.06 3.18 7.97 -2.91 -0.02 3.15 16 15 C -0.07 -3.92 4.62 84.86 0.39 -3.52 16 16 N -0.94 -57.15 12.71 21.65 0.28 -56.88 16 17 Si 1.11 51.26 30.01 68.60 2.06 53.32 16 18 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 21 C 0.10 4.02 6.47 86.67 0.56 4.58 16 22 N -0.22 -6.49 9.39 -49.99 -0.47 -6.96 16 23 N -0.09 -2.34 13.78 37.02 0.51 -1.83 16 24 N -0.35 -6.04 4.03 -355.10 -1.43 -7.47 16 25 C 0.07 0.30 11.18 127.77 1.43 1.73 16 26 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 27 H 0.12 0.53 7.84 -2.38 -0.02 0.51 16 28 H 0.09 1.71 6.43 -2.39 -0.02 1.70 16 29 H 0.09 2.95 6.14 -2.39 -0.01 2.94 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.06 2.28 7.12 -2.39 -0.02 2.27 16 32 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.00 -0.03 6.69 -2.39 -0.02 -0.04 16 34 H 0.04 1.74 6.23 -2.39 -0.01 1.73 16 35 H 0.03 1.46 7.27 -2.39 -0.02 1.44 16 36 H 0.26 15.94 6.38 -92.71 -0.59 15.35 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.06 2.38 6.08 -2.39 -0.01 2.37 16 39 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.13 -0.22 7.78 -2.39 -0.02 -0.23 16 41 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 Total: -1.00 -75.09 331.92 4.43 -70.66 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.22 Total: 7.73 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 6.99 Total: 18.45 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -5.79 Total: -129.23 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.06 Total: -20.93 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 2.06 Total: 53.32 kcal Total: -75.09 4.43 -70.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971259796.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.993 kcal (2) G-P(sol) polarization free energy of solvation -75.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds