Wall clock time and date at job start Tue Mar 31 2020 03:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30825 * 125.96156 * 2 1 4 4 C 1.33246 * 109.83069 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.52576 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.46951 * 270.01641 * 5 4 3 7 7 O 1.21281 * 119.99848 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00197 * 179.97438 * 6 5 4 9 9 C 1.47429 * 125.64518 * 0.03166 * 8 6 5 10 10 C 1.54910 * 104.82787 * 204.08684 * 9 8 6 11 11 C 1.55150 * 101.58369 * 322.99154 * 10 9 8 12 12 H 1.09000 * 110.72080 * 277.13879 * 11 10 9 13 13 N 1.46503 * 110.72179 * 154.04426 * 11 10 9 14 14 C 1.46500 * 119.99710 * 301.44999 * 13 11 10 15 15 C 1.36937 * 119.99930 * 121.45122 * 13 11 10 16 16 H 1.08000 * 120.00271 * 23.49421 * 15 13 11 17 17 C 1.38814 * 119.99493 * 203.48575 * 15 13 11 18 18 N 1.31617 * 120.00423 * 15.10449 * 17 15 13 19 19 Si 1.86804 * 119.99867 * 195.10167 * 17 15 13 20 20 H 1.48505 * 109.46777 * 60.00270 * 19 17 15 21 21 H 1.48498 * 109.47245 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47251 * 300.00803 * 19 17 15 23 23 C 1.47019 * 125.64761 * 179.71782 * 8 6 5 24 24 N 1.30705 * 108.94473 * 359.97438 * 4 3 2 25 25 N 1.34429 * 125.95881 * 179.97438 * 2 1 3 26 26 H 0.96994 * 126.82571 * 359.97438 * 25 2 1 27 27 H 1.09006 * 109.46914 * 270.03855 * 1 2 3 28 28 H 1.09000 * 109.47535 * 30.03685 * 1 2 3 29 29 H 1.09003 * 109.47466 * 150.04400 * 1 2 3 30 30 H 1.09000 * 109.47538 * 30.01835 * 5 4 3 31 31 H 1.08999 * 109.47096 * 150.02017 * 5 4 3 32 32 H 1.08999 * 110.36326 * 322.92492 * 9 8 6 33 33 H 1.08993 * 110.36655 * 85.13862 * 9 8 6 34 34 H 1.08997 * 111.00424 * 81.06565 * 10 9 8 35 35 H 1.08994 * 111.00177 * 204.87675 * 10 9 8 36 36 H 1.09006 * 109.46813 * 95.21223 * 14 13 11 37 37 H 1.09000 * 109.47307 * 215.20737 * 14 13 11 38 38 H 1.08993 * 109.47339 * 335.21294 * 14 13 11 39 39 H 0.96998 * 120.00374 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.88045 * 298.39731 * 23 8 6 41 41 H 1.08999 * 109.88221 * 59.56612 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0589 0.0000 4 6 3.5552 0.6887 0.0006 5 6 4.7372 1.6236 0.0013 6 6 5.1316 1.9358 -1.4194 7 8 4.5134 1.4475 -2.3415 8 7 6.1706 2.7583 -1.6651 9 6 7.0046 3.4178 -0.6437 10 6 7.5919 4.6625 -1.3547 11 6 7.8426 4.1152 -2.7846 12 1 8.7920 3.5818 -2.8324 13 7 7.8099 5.2004 -3.7682 14 6 6.6094 6.0288 -3.9052 15 6 8.9015 5.4405 -4.5594 16 1 9.6152 4.6523 -4.7486 17 6 9.0904 6.6969 -5.1186 18 7 8.4089 7.7279 -4.6661 19 14 10.3122 6.9244 -6.5132 20 1 9.9128 6.0757 -7.6645 21 1 10.3279 8.3496 -6.9300 22 1 11.6676 6.5286 -6.0534 23 6 6.6640 3.1414 -2.9960 24 7 3.6194 -0.6168 0.0015 25 7 2.2964 -1.0881 0.0005 26 1 2.0093 -2.0146 0.0012 27 1 -0.3633 0.0007 1.0277 28 1 -0.3634 0.8896 -0.5144 29 1 -0.3634 -0.8904 -0.5132 30 1 4.4699 2.5468 0.5154 31 1 5.5741 1.1508 0.5151 32 1 6.3941 3.7197 0.2073 33 1 7.8040 2.7518 -0.3190 34 1 6.8711 5.4800 -1.3701 35 1 8.5249 4.9759 -0.8864 36 1 6.7202 6.9313 -3.3040 37 1 6.4749 6.3034 -4.9514 38 1 5.7400 5.4681 -3.5620 39 1 8.5412 8.6059 -5.0565 40 1 7.0036 2.2565 -3.5342 41 1 5.8717 3.6375 -3.5564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971491933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:18 Heat of formation + Delta-G solvation = 80.064551 kcal Electronic energy + Delta-G solvation = -23259.326904 eV Core-core repulsion = 19791.083732 eV Total energy + Delta-G solvation = -3468.243172 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -42.30074 -39.69197 -37.40803 -34.75714 -33.80618 -32.53831 -31.71420 -30.27455 -29.59459 -28.17667 -27.36154 -26.01297 -23.69583 -22.28622 -21.77238 -20.86126 -19.23922 -18.93635 -18.02883 -17.05723 -16.97928 -15.94619 -15.73835 -15.23035 -14.85385 -14.48123 -14.02333 -13.80531 -13.44382 -13.27723 -13.19277 -13.01769 -12.79592 -12.44036 -12.29516 -12.11774 -11.95756 -11.65388 -11.33565 -10.97488 -10.75845 -10.56176 -10.46058 -10.30327 -10.23514 -10.16934 -9.87082 -9.85723 -9.76809 -9.46911 -8.56458 -8.29329 -6.79021 -5.75111 -3.22251 1.41524 2.42710 2.62148 2.84064 3.31872 3.39005 3.44757 3.46451 3.79157 4.34342 4.48125 4.54651 4.71948 4.96480 5.03871 5.07231 5.23681 5.30204 5.35447 5.43727 5.49069 5.58089 5.60327 5.79967 5.93126 6.03925 6.08183 6.23850 6.34294 6.43506 6.60127 6.67440 6.83278 6.85542 6.91160 7.34648 7.70605 7.78788 7.80454 7.94387 8.35389 8.39730 9.19806 9.82790 10.32057 11.29512 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.037553 B = 0.002862 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.442770 B = 9781.758890 C = 9917.419394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.282 3.718 3 N -0.530 5.530 4 C 0.255 3.745 5 C -0.045 4.045 6 C 0.533 3.467 7 O -0.539 6.539 8 N -0.611 5.611 9 C 0.096 3.904 10 C -0.150 4.150 11 C 0.173 3.827 12 H 0.078 0.922 13 N -0.585 5.585 14 C 0.158 3.842 15 C -0.262 4.262 16 H 0.069 0.931 17 C 0.006 3.994 18 N -0.903 5.903 19 Si 0.905 3.095 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.088 3.912 24 N -0.306 5.306 25 N -0.484 5.484 26 H 0.439 0.561 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.039 0.961 38 H 0.004 0.996 39 H 0.254 0.746 40 H 0.060 0.940 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.035 -14.140 13.727 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.003 3.997 3 N -0.259 5.259 4 C -0.028 4.028 5 C -0.087 4.087 6 C 0.320 3.680 7 O -0.416 6.416 8 N -0.345 5.345 9 C -0.027 4.027 10 C -0.191 4.191 11 C 0.062 3.938 12 H 0.097 0.903 13 N -0.306 5.306 14 C 0.013 3.987 15 C -0.391 4.391 16 H 0.087 0.913 17 C -0.193 4.193 18 N -0.547 5.547 19 Si 0.735 3.265 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.209 1.209 23 C -0.036 4.036 24 N -0.134 5.134 25 N -0.202 5.202 26 H 0.284 0.716 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.101 0.899 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.022 0.978 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.839 -14.241 13.149 22.712 hybrid contribution 0.316 -0.393 -0.735 0.892 sum -11.523 -14.634 12.413 22.384 Atomic orbital electron populations 1.20387 0.83647 1.05128 1.04408 1.24365 0.96606 0.82785 0.95914 1.70306 1.01307 1.29535 1.24725 1.23287 0.92640 0.89684 0.97185 1.19884 0.93520 0.98690 0.96649 1.19723 0.79426 0.78611 0.90285 1.90718 1.52657 1.51937 1.46260 1.48437 1.30547 1.46199 1.09363 1.22435 0.93988 0.94962 0.91318 1.23376 1.01319 0.96095 0.98274 1.21300 0.95024 0.89333 0.88108 0.90346 1.43845 1.13218 1.34028 1.39481 1.20800 0.84902 0.92825 1.00153 1.19156 1.02384 0.94653 1.22935 0.91324 1.25013 0.98882 0.95121 1.00319 1.70061 1.43936 0.98944 1.41743 0.86329 0.80917 0.76735 0.82503 1.21030 1.21643 1.20876 1.22745 0.98830 0.98884 0.83145 1.77966 0.96648 1.12260 1.26576 1.47919 1.04287 1.09939 1.58061 0.71608 0.89030 0.88247 0.89915 0.86095 0.86613 0.91145 0.91413 0.90537 0.90282 0.94755 0.94202 0.97759 0.93619 0.92157 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.51 36.00 0.38 -0.03 16 2 C 0.28 3.02 8.24 -155.70 -1.28 1.73 16 3 N -0.53 -7.66 11.19 -8.16 -0.09 -7.75 16 4 C 0.26 3.78 6.63 -156.86 -1.04 2.74 16 5 C -0.05 -0.58 5.33 -29.03 -0.15 -0.73 16 6 C 0.53 9.02 7.84 -10.98 -0.09 8.93 16 7 O -0.54 -11.44 16.36 5.56 0.09 -11.34 16 8 N -0.61 -9.93 3.33 -170.51 -0.57 -10.50 16 9 C 0.10 1.25 6.69 -2.53 -0.02 1.24 16 10 C -0.15 -2.48 6.65 -24.59 -0.16 -2.64 16 11 C 0.17 3.41 3.42 -66.09 -0.23 3.18 16 12 H 0.08 1.52 7.93 -51.93 -0.41 1.11 16 13 N -0.59 -14.33 2.93 -171.38 -0.50 -14.83 16 14 C 0.16 3.86 7.70 59.85 0.46 4.32 16 15 C -0.26 -7.05 9.59 -15.06 -0.14 -7.20 16 16 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 17 C 0.01 0.16 5.06 -17.43 -0.09 0.07 16 18 N -0.90 -25.95 10.86 55.49 0.60 -25.34 16 19 Si 0.91 21.65 29.58 -169.99 -5.03 16.62 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.09 1.67 6.41 -3.06 -0.02 1.65 16 24 N -0.31 -4.38 12.80 32.42 0.41 -3.97 16 25 N -0.48 -5.03 7.45 32.62 0.24 -4.79 16 26 H 0.44 2.71 8.96 -182.34 -1.63 1.08 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.12 1.29 7.85 -51.93 -0.41 0.88 16 31 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 0.74 7.48 -51.93 -0.39 0.35 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.38 7.28 -51.93 -0.38 1.01 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.03 0.90 7.32 -51.93 -0.38 0.52 16 37 H 0.04 1.05 7.43 -51.93 -0.39 0.67 16 38 H 0.00 0.09 6.30 -51.93 -0.33 -0.24 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.07 1.54 6.15 -51.93 -0.32 1.23 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -36.26 339.75 -9.24 -45.50 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -7.14 Total: -1.97 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: -2.38 Total: 13.25 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: 0.10 Total: -67.18 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.26 -9.24 -45.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971491933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.567 kcal (2) G-P(sol) polarization free energy of solvation -36.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds