Wall clock time and date at job start Tue Mar 31 2020 03:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30825 * 125.96156 * 2 1 4 4 C 1.33246 * 109.83069 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.52576 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.46951 * 270.01641 * 5 4 3 7 7 O 1.21281 * 119.99848 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00197 * 179.97438 * 6 5 4 9 9 C 1.47429 * 125.64518 * 0.03166 * 8 6 5 10 10 C 1.54910 * 104.82787 * 204.08684 * 9 8 6 11 11 C 1.55150 * 101.58369 * 322.99154 * 10 9 8 12 12 H 1.09000 * 110.72080 * 277.13879 * 11 10 9 13 13 N 1.46503 * 110.72179 * 154.04426 * 11 10 9 14 14 C 1.46500 * 119.99710 * 301.44999 * 13 11 10 15 15 C 1.36937 * 119.99930 * 121.45122 * 13 11 10 16 16 H 1.08000 * 120.00271 * 23.49421 * 15 13 11 17 17 C 1.38814 * 119.99493 * 203.48575 * 15 13 11 18 18 N 1.31617 * 120.00423 * 15.10449 * 17 15 13 19 19 Si 1.86804 * 119.99867 * 195.10167 * 17 15 13 20 20 H 1.48505 * 109.46777 * 60.00270 * 19 17 15 21 21 H 1.48498 * 109.47245 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47251 * 300.00803 * 19 17 15 23 23 C 1.47019 * 125.64761 * 179.71782 * 8 6 5 24 24 N 1.30705 * 108.94473 * 359.97438 * 4 3 2 25 25 N 1.34429 * 125.95881 * 179.97438 * 2 1 3 26 26 H 0.96994 * 126.82571 * 359.97438 * 25 2 1 27 27 H 1.09006 * 109.46914 * 270.03855 * 1 2 3 28 28 H 1.09000 * 109.47535 * 30.03685 * 1 2 3 29 29 H 1.09003 * 109.47466 * 150.04400 * 1 2 3 30 30 H 1.09000 * 109.47538 * 30.01835 * 5 4 3 31 31 H 1.08999 * 109.47096 * 150.02017 * 5 4 3 32 32 H 1.08999 * 110.36326 * 322.92492 * 9 8 6 33 33 H 1.08993 * 110.36655 * 85.13862 * 9 8 6 34 34 H 1.08997 * 111.00424 * 81.06565 * 10 9 8 35 35 H 1.08994 * 111.00177 * 204.87675 * 10 9 8 36 36 H 1.09006 * 109.46813 * 95.21223 * 14 13 11 37 37 H 1.09000 * 109.47307 * 215.20737 * 14 13 11 38 38 H 1.08993 * 109.47339 * 335.21294 * 14 13 11 39 39 H 0.96998 * 120.00374 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.88045 * 298.39731 * 23 8 6 41 41 H 1.08999 * 109.88221 * 59.56612 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0589 0.0000 4 6 3.5552 0.6887 0.0006 5 6 4.7372 1.6236 0.0013 6 6 5.1316 1.9358 -1.4194 7 8 4.5134 1.4475 -2.3415 8 7 6.1706 2.7583 -1.6651 9 6 7.0046 3.4178 -0.6437 10 6 7.5919 4.6625 -1.3547 11 6 7.8426 4.1152 -2.7846 12 1 8.7920 3.5818 -2.8324 13 7 7.8099 5.2004 -3.7682 14 6 6.6094 6.0288 -3.9052 15 6 8.9015 5.4405 -4.5594 16 1 9.6152 4.6523 -4.7486 17 6 9.0904 6.6969 -5.1186 18 7 8.4089 7.7279 -4.6661 19 14 10.3122 6.9244 -6.5132 20 1 9.9128 6.0757 -7.6645 21 1 10.3279 8.3496 -6.9300 22 1 11.6676 6.5286 -6.0534 23 6 6.6640 3.1414 -2.9960 24 7 3.6194 -0.6168 0.0015 25 7 2.2964 -1.0881 0.0005 26 1 2.0093 -2.0146 0.0012 27 1 -0.3633 0.0007 1.0277 28 1 -0.3634 0.8896 -0.5144 29 1 -0.3634 -0.8904 -0.5132 30 1 4.4699 2.5468 0.5154 31 1 5.5741 1.1508 0.5151 32 1 6.3941 3.7197 0.2073 33 1 7.8040 2.7518 -0.3190 34 1 6.8711 5.4800 -1.3701 35 1 8.5249 4.9759 -0.8864 36 1 6.7202 6.9313 -3.3040 37 1 6.4749 6.3034 -4.9514 38 1 5.7400 5.4681 -3.5620 39 1 8.5412 8.6059 -5.0565 40 1 7.0036 2.2565 -3.5342 41 1 5.8717 3.6375 -3.5564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971491933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:16 Heat of formation + Delta-G solvation = 54.252033 kcal Electronic energy + Delta-G solvation = -23260.446219 eV Core-core repulsion = 19791.083732 eV Total energy + Delta-G solvation = -3469.362487 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.18936 -41.04623 -38.92015 -36.52882 -34.72025 -33.48131 -33.37164 -31.64124 -30.80935 -29.27535 -28.48597 -28.04960 -25.31157 -23.83612 -22.68534 -21.82898 -20.84551 -20.14716 -18.96152 -18.85887 -18.28402 -17.49654 -16.78870 -16.57814 -16.30671 -15.74786 -15.36291 -15.08918 -14.84366 -14.59096 -14.41551 -14.17585 -13.77891 -13.65277 -13.54433 -13.26649 -13.06535 -12.93053 -12.84349 -12.75067 -12.53330 -12.38007 -12.24238 -12.07278 -11.81473 -11.44571 -11.31101 -11.12386 -10.95353 -10.62958 -10.47499 -9.65312 -8.79735 -7.83366 -5.32286 0.53926 1.47721 1.51053 1.55984 1.56600 1.58332 1.72713 2.15104 2.52428 2.99544 3.28959 3.49673 3.57029 3.60916 3.86749 3.88725 4.11152 4.29825 4.36091 4.37611 4.40813 4.50320 4.68637 4.70544 4.73852 4.80104 4.94852 5.03291 5.04579 5.15849 5.22674 5.28165 5.32481 5.35377 5.43637 5.65211 5.67634 6.20386 6.31996 6.52910 7.05324 7.08060 7.13741 7.84029 8.29604 9.19916 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.037553 B = 0.002862 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.442770 B = 9781.758890 C = 9917.419394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.571 5.571 4 C 0.236 3.764 5 C -0.036 4.036 6 C 0.531 3.469 7 O -0.591 6.591 8 N -0.610 5.610 9 C 0.103 3.897 10 C -0.142 4.142 11 C 0.166 3.834 12 H 0.083 0.917 13 N -0.602 5.602 14 C 0.179 3.821 15 C -0.269 4.269 16 H 0.073 0.927 17 C -0.048 4.048 18 N -0.933 5.933 19 Si 0.968 3.032 20 H -0.284 1.284 21 H -0.295 1.295 22 H -0.271 1.271 23 C 0.100 3.900 24 N -0.336 5.336 25 N -0.474 5.474 26 H 0.455 0.545 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.014 0.986 37 H 0.009 0.991 38 H 0.022 0.978 39 H 0.249 0.751 40 H 0.052 0.948 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.214 -15.648 15.702 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.008 3.992 3 N -0.301 5.301 4 C -0.048 4.048 5 C -0.078 4.078 6 C 0.319 3.681 7 O -0.471 6.471 8 N -0.343 5.343 9 C -0.018 4.018 10 C -0.182 4.182 11 C 0.057 3.943 12 H 0.102 0.898 13 N -0.323 5.323 14 C 0.034 3.966 15 C -0.399 4.399 16 H 0.091 0.909 17 C -0.244 4.244 18 N -0.579 5.579 19 Si 0.796 3.204 20 H -0.210 1.210 21 H -0.221 1.221 22 H -0.197 1.197 23 C -0.026 4.026 24 N -0.166 5.166 25 N -0.195 5.195 26 H 0.304 0.696 27 H 0.134 0.866 28 H 0.113 0.887 29 H 0.129 0.871 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.032 0.968 37 H 0.028 0.972 38 H 0.040 0.960 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.012 -15.804 15.177 24.988 hybrid contribution 0.284 -0.032 -1.340 1.370 sum -11.728 -15.835 13.836 24.078 Atomic orbital electron populations 1.20649 0.80011 1.06297 1.06315 1.25257 0.98346 0.81990 0.93647 1.70298 1.01731 1.31477 1.26604 1.23633 0.93389 0.90117 0.97629 1.19963 0.94216 0.99903 0.93693 1.20472 0.78465 0.77552 0.91589 1.90689 1.54293 1.53919 1.48243 1.48490 1.30815 1.46177 1.08858 1.22642 0.94902 0.93424 0.90840 1.23214 1.01691 0.97083 0.96219 1.21482 0.95510 0.88219 0.89080 0.89839 1.44007 1.12517 1.34904 1.40910 1.20446 0.85934 0.92446 0.97779 1.19505 1.02623 0.94693 1.23083 0.90877 1.25757 1.01005 0.95028 1.02619 1.70211 1.45710 0.99049 1.42959 0.85338 0.79320 0.76121 0.79626 1.20993 1.22120 1.19675 1.22365 0.97507 0.98034 0.84677 1.77839 0.98870 1.12406 1.27477 1.47853 1.03216 1.10987 1.57425 0.69591 0.86569 0.88684 0.87064 0.83681 0.83494 0.87378 0.88194 0.92406 0.89155 0.96814 0.97218 0.95991 0.94202 0.92921 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.51 71.24 0.75 0.15 16 2 C 0.29 5.64 8.24 138.23 1.14 6.78 16 3 N -0.57 -15.89 11.19 -179.74 -2.01 -17.90 16 4 C 0.24 6.67 6.63 138.63 0.92 7.59 16 5 C -0.04 -0.84 5.33 29.10 0.16 -0.68 16 6 C 0.53 17.29 7.84 87.66 0.69 17.98 16 7 O -0.59 -25.31 16.36 -3.03 -0.05 -25.36 16 8 N -0.61 -18.80 3.33 -811.77 -2.70 -21.50 16 9 C 0.10 2.32 6.69 86.85 0.58 2.90 16 10 C -0.14 -4.41 6.65 31.98 0.21 -4.20 16 11 C 0.17 6.44 3.42 46.18 0.16 6.59 16 12 H 0.08 3.15 7.93 -2.39 -0.02 3.13 16 13 N -0.60 -29.88 2.93 -696.13 -2.04 -31.92 16 14 C 0.18 9.05 7.70 127.77 0.98 10.03 16 15 C -0.27 -14.61 9.59 84.03 0.81 -13.80 16 16 H 0.07 3.82 7.85 -2.91 -0.02 3.79 16 17 C -0.05 -2.69 5.06 84.86 0.43 -2.26 16 18 N -0.93 -54.92 10.86 21.65 0.24 -54.68 16 19 Si 0.97 44.94 29.58 68.60 2.03 46.97 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 C 0.10 3.76 6.41 86.73 0.56 4.32 16 24 N -0.34 -9.25 12.80 -51.34 -0.66 -9.90 16 25 N -0.47 -9.15 7.45 -50.71 -0.38 -9.52 16 26 H 0.46 4.80 8.96 -213.10 -1.91 2.89 16 27 H 0.12 0.42 8.14 -2.38 -0.02 0.40 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.15 2.61 7.85 -2.39 -0.02 2.59 16 31 H 0.15 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.11 1.72 7.48 -2.39 -0.02 1.70 16 33 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 2.03 7.28 -2.39 -0.02 2.01 16 35 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.01 0.74 7.32 -2.38 -0.02 0.72 16 37 H 0.01 0.51 7.43 -2.39 -0.02 0.49 16 38 H 0.02 1.00 6.30 -2.39 -0.02 0.99 16 39 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.04 1.89 6.15 -2.39 -0.01 1.88 16 Total: -1.00 -82.09 339.75 0.95 -81.15 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -0.86 Total: 7.28 kcal Atomic # 6 Polarization: 28.02 SS G_CDS: 7.38 Total: 35.39 kcal Atomic # 7 Polarization: -137.87 SS G_CDS: -7.55 Total: -145.42 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -82.09 0.95 -81.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971491933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.397 kcal (2) G-P(sol) polarization free energy of solvation -82.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds