Wall clock time and date at job start Tue Mar 31 2020 03:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36933 * 120.00361 * 2 1 4 4 H 1.07996 * 120.00167 * 159.92852 * 3 2 1 5 5 C 1.38815 * 119.99631 * 339.66082 * 3 2 1 6 6 N 1.31612 * 120.00158 * 347.73199 * 5 3 2 7 7 Si 1.86803 * 119.99628 * 167.73900 * 5 3 2 8 8 H 1.48504 * 109.47099 * 89.99745 * 7 5 3 9 9 H 1.48499 * 109.46644 * 209.99629 * 7 5 3 10 10 H 1.48493 * 109.47283 * 329.99318 * 7 5 3 11 11 C 1.46501 * 119.99573 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.88436 * 176.11924 * 11 2 1 13 13 C 1.55156 * 111.00430 * 52.19474 * 11 2 1 14 14 C 1.54322 * 102.94059 * 206.42312 * 13 11 2 15 15 N 1.47026 * 107.27400 * 22.19149 * 14 13 11 16 16 C 1.34775 * 125.64936 * 181.02066 * 15 14 13 17 17 O 1.21279 * 119.99714 * 180.02562 * 16 15 14 18 18 C 1.50702 * 119.99999 * 0.04764 * 16 15 14 19 19 C 1.52994 * 109.47006 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47374 * 179.97438 * 19 18 16 21 21 C 1.41383 * 126.80409 * 124.99872 * 20 19 18 22 22 C 1.35452 * 103.98238 * 180.02562 * 21 20 19 23 23 O 1.34034 * 106.45180 * 359.97438 * 22 21 20 24 24 N 1.20922 * 111.56373 * 359.71362 * 23 22 21 25 25 C 1.47422 * 108.69827 * 1.06320 * 15 14 13 26 26 H 1.08995 * 109.46905 * 84.84929 * 1 2 3 27 27 H 1.08999 * 109.47027 * 204.85279 * 1 2 3 28 28 H 1.08997 * 109.46726 * 324.85244 * 1 2 3 29 29 H 0.97009 * 120.00287 * 180.02562 * 6 5 3 30 30 H 1.08992 * 110.72305 * 324.78431 * 13 11 2 31 31 H 1.08997 * 110.72187 * 88.06314 * 13 11 2 32 32 H 1.09003 * 109.88221 * 262.77529 * 14 13 11 33 33 H 1.08999 * 110.01145 * 141.68628 * 14 13 11 34 34 H 1.09001 * 109.46824 * 299.99886 * 18 16 15 35 35 H 1.08993 * 109.47351 * 59.99727 * 18 16 15 36 36 H 1.09001 * 109.47381 * 299.99722 * 19 18 16 37 37 H 1.09007 * 109.47217 * 59.99858 * 19 18 16 38 38 H 1.07998 * 128.00327 * 359.96208 * 21 20 19 39 39 H 1.08007 * 126.77122 * 179.97438 * 22 21 20 40 40 H 1.09003 * 110.36561 * 217.02857 * 25 15 14 41 41 H 1.08995 * 110.37060 * 94.71079 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1806 1.2142 0.3210 5 6 1.5206 2.3505 -0.4179 6 7 0.3608 2.2864 -1.0366 7 14 2.3204 4.0089 -0.1021 8 1 3.1937 4.3639 -1.2496 9 1 1.2674 5.0438 0.0573 10 1 3.1357 3.9374 1.1369 11 6 2.1975 -1.2688 -0.0006 12 1 3.2717 -1.0973 -0.0694 13 6 1.7066 -2.1938 -1.1454 14 6 2.0241 -3.6056 -0.6092 15 7 2.1175 -3.5059 0.8546 16 6 2.4009 -4.5210 1.6947 17 8 2.4516 -4.3227 2.8900 18 6 2.6551 -5.9024 1.1485 19 6 2.9515 -6.8609 2.3035 20 6 3.2051 -8.2424 1.7575 21 6 4.3465 -9.0458 1.9828 22 6 4.0934 -10.1776 1.2830 23 8 2.8930 -10.0097 0.7108 24 7 2.4142 -8.9349 0.9897 25 6 1.8488 -2.1117 1.2515 26 1 -0.3633 0.0923 -1.0235 27 1 -0.3633 -0.9325 0.4319 28 1 -0.3633 0.8403 0.5916 29 1 -0.0787 3.1002 -1.3289 30 1 0.6351 -2.0741 -1.3054 31 1 2.2591 -1.9969 -2.0641 32 1 2.9730 -3.9528 -1.0184 33 1 1.2273 -4.2968 -0.8837 34 1 1.7741 -6.2468 0.6069 35 1 3.5093 -5.8741 0.4720 36 1 3.8327 -6.5163 2.8447 37 1 2.0975 -6.8893 2.9804 38 1 5.2186 -8.8110 2.5749 39 1 4.7327 -11.0443 1.2020 40 1 2.4846 -1.8267 2.0897 41 1 0.7978 -1.9872 1.5120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971941919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:04 Heat of formation + Delta-G solvation = 53.177172 kcal Electronic energy + Delta-G solvation = -23025.855800 eV Core-core repulsion = 19524.153953 eV Total energy + Delta-G solvation = -3501.701847 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -45.19991 -39.85295 -37.59039 -35.48917 -34.82750 -32.46763 -31.76934 -31.21157 -29.75624 -28.08396 -26.10318 -25.59272 -23.42513 -23.22669 -22.29148 -20.98284 -19.33081 -18.91478 -18.12041 -17.77415 -17.08351 -16.83661 -16.09811 -15.41777 -15.17635 -14.93304 -14.32105 -13.84243 -13.61259 -13.40839 -13.22778 -12.97899 -12.70453 -12.50078 -12.41638 -12.16494 -11.93255 -11.79114 -11.36477 -11.19740 -10.94397 -10.79520 -10.50929 -10.48421 -10.31929 -10.27280 -9.94841 -9.90234 -9.87800 -9.62132 -8.61109 -8.35789 -6.85680 -5.77631 -3.22994 1.22219 1.94691 2.77943 2.98581 3.18368 3.35950 3.42913 3.45285 3.90881 4.23481 4.45248 4.63771 4.83979 4.89035 4.91368 5.01572 5.15106 5.21231 5.32941 5.34804 5.38763 5.52174 5.59902 5.67213 5.75663 5.77209 5.90003 5.91578 6.00820 6.28568 6.37501 6.52373 6.62060 6.75936 6.85374 7.36815 7.67690 7.77001 7.77453 8.00464 8.30188 8.34359 9.17463 9.79816 10.27099 11.27155 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.042628 B = 0.002616 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.691017 B =10698.803594 C =10901.130515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.259 4.259 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.289 1.289 10 H -0.279 1.279 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.151 4.151 14 C 0.102 3.898 15 N -0.612 5.612 16 C 0.526 3.474 17 O -0.549 6.549 18 C -0.130 4.130 19 C -0.026 4.026 20 C 0.020 3.980 21 C -0.231 4.231 22 C -0.062 4.062 23 O 0.098 5.902 24 N -0.363 5.363 25 C 0.084 3.916 26 H 0.032 0.968 27 H 0.000 1.000 28 H 0.047 0.953 29 H 0.253 0.747 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.172 0.828 39 H 0.216 0.784 40 H 0.072 0.928 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.011 -22.705 1.893 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.388 4.388 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.191 4.191 14 C -0.022 4.022 15 N -0.346 5.346 16 C 0.314 3.686 17 O -0.428 6.428 18 C -0.171 4.171 19 C -0.064 4.064 20 C -0.139 4.139 21 C -0.252 4.252 22 C -0.144 4.144 23 O 0.031 5.969 24 N -0.067 5.067 25 C -0.040 4.040 26 H 0.050 0.950 27 H 0.018 0.982 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.190 0.810 39 H 0.232 0.768 40 H 0.090 0.910 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.706 -22.235 1.975 23.040 hybrid contribution 1.176 0.866 0.389 1.512 sum 6.883 -21.369 2.364 22.574 Atomic orbital electron populations 1.20827 0.82239 0.95639 0.99600 1.43849 1.01994 0.99851 1.85017 1.19240 0.96842 0.84854 1.37861 0.91138 1.24988 0.97545 0.98490 0.98543 1.70082 1.17031 1.26907 1.41202 0.86220 0.78300 0.83712 0.78066 1.21411 1.21554 1.20492 1.21396 0.96351 0.85842 0.90140 0.90407 1.23213 1.02885 0.92600 1.00441 1.22076 1.00643 0.99443 0.79994 1.48508 1.68690 1.09869 1.07536 1.20134 0.76808 0.85646 0.86015 1.90692 1.52746 1.84233 1.15132 1.21565 1.04254 0.92063 0.99191 1.19746 1.04597 0.85322 0.96774 1.23743 0.92019 0.99434 0.98737 1.22809 1.01658 0.94541 1.06233 1.26035 0.89104 1.01647 0.97583 1.84852 1.28033 1.28614 1.55356 1.73859 1.21766 0.94096 1.16974 1.23037 1.01282 0.79201 1.00498 0.95011 0.98203 0.93445 0.93665 0.90446 0.90462 0.91874 0.91999 0.88555 0.88917 0.88684 0.89000 0.81047 0.76766 0.90956 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.87 7.55 59.85 0.45 4.32 16 2 N -0.59 -14.26 2.96 -171.03 -0.51 -14.76 16 3 C -0.26 -6.95 9.65 -15.06 -0.15 -7.09 16 4 H 0.07 1.85 7.84 -52.49 -0.41 1.44 16 5 C 0.00 0.07 5.12 -17.43 -0.09 -0.02 16 6 N -0.91 -25.90 10.51 55.49 0.58 -25.32 16 7 Si 0.91 21.58 29.57 -169.99 -5.03 16.55 16 8 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 C 0.17 3.42 3.53 -65.78 -0.23 3.19 16 12 H 0.08 1.55 7.94 -51.93 -0.41 1.13 16 13 C -0.15 -2.49 6.50 -24.90 -0.16 -2.65 16 14 C 0.10 1.37 6.49 -3.06 -0.02 1.35 16 15 N -0.61 -9.72 3.33 -170.52 -0.57 -10.29 16 16 C 0.53 8.14 7.85 -10.98 -0.09 8.05 16 17 O -0.55 -10.33 16.24 5.56 0.09 -10.24 16 18 C -0.13 -1.49 4.87 -27.89 -0.14 -1.63 16 19 C -0.03 -0.28 5.10 -27.89 -0.14 -0.42 16 20 C 0.02 0.20 6.59 -82.10 -0.54 -0.34 16 21 C -0.23 -1.71 11.12 -39.38 -0.44 -2.15 16 22 C -0.06 -0.37 12.30 29.74 0.37 -0.01 16 23 O 0.10 0.91 11.20 17.19 0.19 1.11 16 24 N -0.36 -4.15 12.06 33.43 0.40 -3.75 16 25 C 0.08 1.57 6.47 -2.53 -0.02 1.55 16 26 H 0.03 0.82 7.41 -51.93 -0.38 0.43 16 27 H 0.00 -0.01 6.38 -51.93 -0.33 -0.34 16 28 H 0.05 1.24 7.14 -51.93 -0.37 0.87 16 29 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.08 1.36 6.99 -51.93 -0.36 1.00 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 37 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.22 0.30 8.06 -52.48 -0.42 -0.12 16 40 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 41 H 0.07 1.34 6.42 -51.93 -0.33 1.00 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -32.32 339.80 -6.86 -39.18 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.96 Total: -1.76 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.19 Total: 4.15 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.09 Total: -54.12 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.28 Total: -9.14 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.32 -6.86 -39.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971941919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.359 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds