Wall clock time and date at job start Tue Mar 31 2020 03:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36933 * 120.00361 * 2 1 4 4 H 1.07996 * 120.00167 * 159.92852 * 3 2 1 5 5 C 1.38815 * 119.99631 * 339.66082 * 3 2 1 6 6 N 1.31612 * 120.00158 * 347.73199 * 5 3 2 7 7 Si 1.86803 * 119.99628 * 167.73900 * 5 3 2 8 8 H 1.48504 * 109.47099 * 89.99745 * 7 5 3 9 9 H 1.48499 * 109.46644 * 209.99629 * 7 5 3 10 10 H 1.48493 * 109.47283 * 329.99318 * 7 5 3 11 11 C 1.46501 * 119.99573 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.88436 * 176.11924 * 11 2 1 13 13 C 1.55156 * 111.00430 * 52.19474 * 11 2 1 14 14 C 1.54322 * 102.94059 * 206.42312 * 13 11 2 15 15 N 1.47026 * 107.27400 * 22.19149 * 14 13 11 16 16 C 1.34775 * 125.64936 * 181.02066 * 15 14 13 17 17 O 1.21279 * 119.99714 * 180.02562 * 16 15 14 18 18 C 1.50702 * 119.99999 * 0.04764 * 16 15 14 19 19 C 1.52994 * 109.47006 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47374 * 179.97438 * 19 18 16 21 21 C 1.41383 * 126.80409 * 124.99872 * 20 19 18 22 22 C 1.35452 * 103.98238 * 180.02562 * 21 20 19 23 23 O 1.34034 * 106.45180 * 359.97438 * 22 21 20 24 24 N 1.20922 * 111.56373 * 359.71362 * 23 22 21 25 25 C 1.47422 * 108.69827 * 1.06320 * 15 14 13 26 26 H 1.08995 * 109.46905 * 84.84929 * 1 2 3 27 27 H 1.08999 * 109.47027 * 204.85279 * 1 2 3 28 28 H 1.08997 * 109.46726 * 324.85244 * 1 2 3 29 29 H 0.97009 * 120.00287 * 180.02562 * 6 5 3 30 30 H 1.08992 * 110.72305 * 324.78431 * 13 11 2 31 31 H 1.08997 * 110.72187 * 88.06314 * 13 11 2 32 32 H 1.09003 * 109.88221 * 262.77529 * 14 13 11 33 33 H 1.08999 * 110.01145 * 141.68628 * 14 13 11 34 34 H 1.09001 * 109.46824 * 299.99886 * 18 16 15 35 35 H 1.08993 * 109.47351 * 59.99727 * 18 16 15 36 36 H 1.09001 * 109.47381 * 299.99722 * 19 18 16 37 37 H 1.09007 * 109.47217 * 59.99858 * 19 18 16 38 38 H 1.07998 * 128.00327 * 359.96208 * 21 20 19 39 39 H 1.08007 * 126.77122 * 179.97438 * 22 21 20 40 40 H 1.09003 * 110.36561 * 217.02857 * 25 15 14 41 41 H 1.08995 * 110.37060 * 94.71079 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1806 1.2142 0.3210 5 6 1.5206 2.3505 -0.4179 6 7 0.3608 2.2864 -1.0366 7 14 2.3204 4.0089 -0.1021 8 1 3.1937 4.3639 -1.2496 9 1 1.2674 5.0438 0.0573 10 1 3.1357 3.9374 1.1369 11 6 2.1975 -1.2688 -0.0006 12 1 3.2717 -1.0973 -0.0694 13 6 1.7066 -2.1938 -1.1454 14 6 2.0241 -3.6056 -0.6092 15 7 2.1175 -3.5059 0.8546 16 6 2.4009 -4.5210 1.6947 17 8 2.4516 -4.3227 2.8900 18 6 2.6551 -5.9024 1.1485 19 6 2.9515 -6.8609 2.3035 20 6 3.2051 -8.2424 1.7575 21 6 4.3465 -9.0458 1.9828 22 6 4.0934 -10.1776 1.2830 23 8 2.8930 -10.0097 0.7108 24 7 2.4142 -8.9349 0.9897 25 6 1.8488 -2.1117 1.2515 26 1 -0.3633 0.0923 -1.0235 27 1 -0.3633 -0.9325 0.4319 28 1 -0.3633 0.8403 0.5916 29 1 -0.0787 3.1002 -1.3289 30 1 0.6351 -2.0741 -1.3054 31 1 2.2591 -1.9969 -2.0641 32 1 2.9730 -3.9528 -1.0184 33 1 1.2273 -4.2968 -0.8837 34 1 1.7741 -6.2468 0.6069 35 1 3.5093 -5.8741 0.4720 36 1 3.8327 -6.5163 2.8447 37 1 2.0975 -6.8893 2.9804 38 1 5.2186 -8.8110 2.5749 39 1 4.7327 -11.0443 1.2020 40 1 2.4846 -1.8267 2.0897 41 1 0.7978 -1.9872 1.5120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971941919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:03 Heat of formation + Delta-G solvation = 32.907543 kcal Electronic energy + Delta-G solvation = -23026.734757 eV Core-core repulsion = 19524.153953 eV Total energy + Delta-G solvation = -3502.580804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.85000 -41.15785 -39.04170 -36.60754 -36.25901 -33.60244 -33.00617 -32.16299 -31.24041 -29.52757 -28.09449 -26.73089 -24.79795 -24.02074 -23.72807 -21.68087 -20.96083 -20.10285 -18.98115 -18.82505 -18.45892 -17.97496 -17.60099 -16.71025 -16.45273 -16.05465 -15.63698 -15.21765 -14.95068 -14.63621 -14.42465 -14.27556 -14.12622 -13.89006 -13.48200 -13.34802 -13.21354 -12.96894 -12.81216 -12.62531 -12.48199 -12.41965 -12.15585 -12.12344 -11.97133 -11.84356 -11.46654 -11.09079 -10.85864 -10.65275 -10.50096 -9.69936 -8.83775 -7.84870 -5.31861 0.67949 1.31141 1.46398 1.48448 1.55979 1.57385 1.93975 2.50368 2.54048 3.18020 3.28003 3.48818 3.53705 3.68963 3.90528 3.95668 4.07013 4.19549 4.21596 4.32192 4.33426 4.42078 4.47983 4.63392 4.69500 4.73867 4.76720 4.87927 4.91492 4.99236 5.06135 5.18283 5.20876 5.22768 5.29170 5.41787 5.61428 5.71341 6.28917 6.52645 7.07384 7.12577 7.40633 7.82701 8.25675 9.18442 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.042628 B = 0.002616 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.691017 B =10698.803594 C =10901.130515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.604 5.604 3 C -0.267 4.267 4 H 0.073 0.927 5 C -0.051 4.051 6 N -0.937 5.937 7 Si 0.970 3.030 8 H -0.282 1.282 9 H -0.294 1.294 10 H -0.273 1.273 11 C 0.167 3.833 12 H 0.076 0.924 13 C -0.142 4.142 14 C 0.109 3.891 15 N -0.614 5.614 16 C 0.523 3.477 17 O -0.588 6.588 18 C -0.116 4.116 19 C -0.022 4.022 20 C 0.003 3.997 21 C -0.242 4.242 22 C -0.042 4.042 23 O 0.088 5.912 24 N -0.397 5.397 25 C 0.096 3.904 26 H 0.011 0.989 27 H 0.025 0.975 28 H 0.016 0.984 29 H 0.249 0.751 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.194 0.806 39 H 0.262 0.738 40 H 0.054 0.946 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.864 -25.069 1.311 26.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.325 5.325 3 C -0.396 4.396 4 H 0.090 0.910 5 C -0.246 4.246 6 N -0.583 5.583 7 Si 0.798 3.202 8 H -0.209 1.209 9 H -0.221 1.221 10 H -0.198 1.198 11 C 0.058 3.942 12 H 0.094 0.906 13 C -0.182 4.182 14 C -0.014 4.014 15 N -0.347 5.347 16 C 0.314 3.686 17 O -0.469 6.469 18 C -0.156 4.156 19 C -0.060 4.060 20 C -0.155 4.155 21 C -0.264 4.264 22 C -0.123 4.123 23 O 0.022 5.978 24 N -0.102 5.102 25 C -0.029 4.029 26 H 0.029 0.971 27 H 0.043 0.957 28 H 0.035 0.965 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.211 0.789 39 H 0.278 0.722 40 H 0.073 0.927 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.582 -24.648 1.378 25.825 hybrid contribution 0.651 1.490 0.619 1.739 sum 8.233 -23.159 1.997 24.660 Atomic orbital electron populations 1.20500 0.82548 0.95520 0.97865 1.44007 1.02110 1.00932 1.85438 1.19559 0.97027 0.86128 1.36935 0.90954 1.25726 0.98291 1.01635 0.98966 1.70235 1.18330 1.27231 1.42512 0.85239 0.77265 0.79643 0.78070 1.20872 1.22053 1.19849 1.21531 0.95881 0.84806 0.92030 0.90599 1.23055 1.02060 0.93562 0.99479 1.22185 1.03259 0.97798 0.78115 1.48575 1.68712 1.08671 1.08786 1.20867 0.75572 0.86721 0.85439 1.90676 1.54314 1.84949 1.16973 1.21518 1.05395 0.89073 0.99574 1.19634 1.04069 0.85990 0.96335 1.23796 0.93216 0.99294 0.99180 1.23138 1.01653 0.94544 1.07033 1.26893 0.87754 1.02379 0.95290 1.84802 1.29386 1.27924 1.55659 1.73859 1.23001 0.95076 1.18305 1.22637 0.99882 0.81122 0.99299 0.97078 0.95701 0.96501 0.94200 0.91675 0.89540 0.88718 0.89549 0.87847 0.86635 0.88343 0.90698 0.78921 0.72210 0.92725 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.88 7.55 127.77 0.96 9.84 16 2 N -0.60 -29.70 2.96 -695.02 -2.06 -31.76 16 3 C -0.27 -14.47 9.65 84.03 0.81 -13.65 16 4 H 0.07 3.81 7.84 -2.91 -0.02 3.78 16 5 C -0.05 -2.83 5.12 84.86 0.43 -2.40 16 6 N -0.94 -54.69 10.51 21.65 0.23 -54.46 16 7 Si 0.97 44.86 29.57 68.60 2.03 46.89 16 8 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 9 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 C 0.17 6.50 3.53 46.38 0.16 6.67 16 12 H 0.08 2.98 7.94 -2.39 -0.02 2.96 16 13 C -0.14 -4.43 6.50 31.78 0.21 -4.22 16 14 C 0.11 2.59 6.49 86.73 0.56 3.15 16 15 N -0.61 -18.53 3.33 -811.80 -2.70 -21.23 16 16 C 0.52 15.55 7.85 87.66 0.69 16.24 16 17 O -0.59 -22.10 16.24 -3.03 -0.05 -22.15 16 18 C -0.12 -2.40 4.87 29.85 0.15 -2.25 16 19 C -0.02 -0.45 5.10 29.85 0.15 -0.29 16 20 C 0.00 0.06 6.59 43.58 0.29 0.35 16 21 C -0.24 -2.91 11.12 22.40 0.25 -2.66 16 22 C -0.04 -0.36 12.30 67.18 0.83 0.46 16 23 O 0.09 1.45 11.20 71.69 0.80 2.25 16 24 N -0.40 -8.46 12.06 -49.54 -0.60 -9.06 16 25 C 0.10 3.57 6.47 86.86 0.56 4.13 16 26 H 0.01 0.58 7.41 -2.39 -0.02 0.56 16 27 H 0.02 1.07 6.38 -2.39 -0.02 1.05 16 28 H 0.02 0.89 7.14 -2.39 -0.02 0.88 16 29 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 30 H 0.06 2.21 6.99 -2.39 -0.02 2.20 16 31 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.10 1.90 8.09 -2.39 -0.02 1.88 16 37 H 0.07 1.76 8.10 -2.38 -0.02 1.74 16 38 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 39 H 0.26 -0.58 8.06 -2.91 -0.02 -0.60 16 40 H 0.05 2.20 8.04 -2.39 -0.02 2.18 16 41 H 0.05 2.11 6.42 -2.39 -0.02 2.10 16 Total: -1.00 -72.17 339.80 4.73 -67.44 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 1.02 Total: 6.74 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 6.05 Total: 15.35 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -5.13 Total: -116.51 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.75 Total: -19.90 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -72.17 4.73 -67.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971941919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.347 kcal (2) G-P(sol) polarization free energy of solvation -72.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds