Wall clock time and date at job start Tue Mar 31 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46873 * 2 1 4 4 C 1.47203 * 109.47321 * 240.00473 * 2 1 3 5 5 N 2.60797 * 109.47207 * 240.00221 * 2 1 3 6 6 C 1.50695 * 109.47432 * 119.99796 * 2 1 3 7 7 O 1.21284 * 119.99788 * 98.51038 * 6 2 1 8 8 N 1.34777 * 120.00356 * 278.23824 * 6 2 1 9 9 C 1.47481 * 125.66622 * 175.25653 * 8 6 2 10 10 C 1.55258 * 104.78354 * 155.91484 * 9 8 6 11 11 C 1.54516 * 101.42478 * 36.67852 * 10 9 8 12 12 C 1.47181 * 125.65861 * 355.56820 * 8 6 2 13 13 C 1.52523 * 110.05696 * 206.74044 * 11 10 9 14 14 N 1.47307 * 108.40893 * 287.85135 * 13 11 10 15 15 C 1.36943 * 121.05830 * 130.60647 * 14 13 11 16 16 H 1.07992 * 119.99852 * 206.34601 * 15 14 13 17 17 C 1.38816 * 119.99884 * 26.35115 * 15 14 13 18 18 N 1.31615 * 120.00003 * 15.63009 * 17 15 14 19 19 Si 1.86795 * 119.99639 * 195.63364 * 17 15 14 20 20 H 1.48495 * 109.47555 * 89.99815 * 19 17 15 21 21 H 1.48500 * 109.47065 * 209.99966 * 19 17 15 22 22 H 1.48506 * 109.47350 * 329.99421 * 19 17 15 23 23 C 1.47159 * 117.87739 * 310.63552 * 14 13 11 24 24 C 1.53282 * 108.54424 * 51.13250 * 23 14 13 25 25 O 1.42062 * 110.33656 * 83.75421 * 11 10 9 26 26 H 1.09002 * 109.47502 * 51.47972 * 1 2 3 27 27 H 1.09004 * 109.46564 * 171.47546 * 1 2 3 28 28 H 1.08997 * 109.47135 * 291.47592 * 1 2 3 29 29 H 1.08998 * 110.35438 * 274.86781 * 9 8 6 30 30 H 1.08998 * 110.34984 * 37.15855 * 9 8 6 31 31 H 1.08998 * 111.21331 * 278.58602 * 10 9 8 32 32 H 1.09000 * 110.90988 * 154.64033 * 10 9 8 33 33 H 1.09007 * 109.91113 * 300.84370 * 12 8 6 34 34 H 1.09004 * 109.91341 * 61.92066 * 12 8 6 35 35 H 1.08995 * 109.67565 * 47.58141 * 13 11 10 36 36 H 1.09001 * 109.67512 * 168.12744 * 13 11 10 37 37 H 0.96998 * 120.00090 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.61853 * 291.41768 * 23 14 13 39 39 H 1.09001 * 109.78092 * 170.94838 * 23 14 13 40 40 H 1.08995 * 109.51444 * 187.15831 * 24 23 14 41 41 H 1.09004 * 109.50742 * 67.00411 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 -1.2019 5 7 2.3994 -1.2293 -2.1294 6 6 2.0324 -0.7103 1.2304 7 8 2.3811 -1.8699 1.1613 8 7 2.0994 -0.0555 2.4065 9 6 2.4751 -0.6513 3.7023 10 6 2.9971 0.5403 4.5497 11 6 2.0505 1.6750 4.0981 12 6 1.8035 1.3715 2.6121 13 6 2.7384 3.0264 4.2617 14 7 2.8198 3.3358 5.6996 15 6 3.9985 3.7362 6.2705 16 1 4.1787 3.5561 7.3199 17 6 4.9615 4.3735 5.5002 18 7 4.6414 4.8680 4.3232 19 14 6.7117 4.5292 6.1341 20 1 7.5022 3.3494 5.7003 21 1 7.3276 5.7654 5.5886 22 1 6.6967 4.5967 7.6176 23 6 1.5944 3.2005 6.5030 24 6 0.9915 1.8154 6.2430 25 8 0.8358 1.6265 4.8332 26 1 -0.3634 0.6400 -0.8040 27 1 -0.3632 -1.0164 -0.1523 28 1 -0.3633 0.3762 0.9563 29 1 1.6054 -1.1053 4.1772 30 1 3.2629 -1.3919 3.5647 31 1 4.0330 0.7747 4.3047 32 1 2.8850 0.3386 5.6150 33 1 2.4638 1.9803 1.9942 34 1 0.7637 1.5757 2.3565 35 1 3.7419 2.9809 3.8386 36 1 2.1594 3.7969 3.7527 37 1 5.3144 5.3130 3.7847 38 1 0.8799 3.9710 6.2134 39 1 1.8341 3.3027 7.5614 40 1 0.0187 1.7445 6.7295 41 1 1.6557 1.0486 6.6418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972297718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:28 Heat of formation + Delta-G solvation = -15.917461 kcal Electronic energy + Delta-G solvation = -24546.015738 eV Core-core repulsion = 21041.317722 eV Total energy + Delta-G solvation = -3504.698015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.54852 -39.12672 -36.77331 -36.10627 -34.56629 -33.55416 -31.48650 -31.20938 -29.68198 -27.51623 -25.96153 -25.36167 -23.67527 -22.79506 -21.51500 -20.04210 -18.90629 -17.66314 -17.46250 -17.07024 -16.23749 -15.56018 -15.40660 -14.76513 -14.58080 -14.43073 -14.26504 -13.84757 -13.50730 -13.31398 -13.14481 -12.96320 -12.81051 -12.68960 -12.51747 -12.32949 -12.14642 -11.95018 -11.67286 -11.43215 -11.18603 -11.02549 -10.94742 -10.76876 -10.34520 -10.34015 -10.09529 -9.91513 -9.65991 -9.15633 -8.64840 -8.63174 -6.85083 -5.94739 -3.38065 2.32284 2.43307 2.68800 3.09445 3.28547 3.36356 3.37159 3.68759 4.05577 4.29508 4.35272 4.65701 4.76338 4.80612 4.95309 5.22016 5.30677 5.32203 5.35697 5.39508 5.48591 5.63375 5.69101 5.71245 5.80391 5.82015 5.90163 6.03082 6.20228 6.24566 6.30047 6.44312 6.52540 6.68935 6.94361 7.30170 7.34879 7.48449 7.62722 7.77870 7.99579 8.22501 9.01139 9.63552 10.20169 11.13782 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018140 B = 0.004700 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.168907 B = 5955.815667 C = 6676.173439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.011 4.011 3 H 0.138 0.862 4 C 0.226 3.774 5 N -0.418 5.418 6 C 0.539 3.461 7 O -0.537 6.537 8 N -0.606 5.606 9 C 0.109 3.891 10 C -0.145 4.145 11 C 0.085 3.915 12 C 0.110 3.890 13 C 0.163 3.837 14 N -0.592 5.592 15 C -0.254 4.254 16 H 0.069 0.931 17 C 0.005 3.995 18 N -0.904 5.904 19 Si 0.903 3.097 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.377 6.377 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.031 0.969 37 H 0.256 0.744 38 H 0.027 0.973 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.044 -5.438 -2.030 10.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.036 4.036 3 H 0.155 0.845 4 C -0.093 4.093 5 N -0.093 5.093 6 C 0.325 3.675 7 O -0.414 6.414 8 N -0.340 5.340 9 C -0.013 4.013 10 C -0.183 4.183 11 C 0.043 3.957 12 C -0.013 4.013 13 C 0.036 3.964 14 N -0.316 5.316 15 C -0.383 4.383 16 H 0.087 0.913 17 C -0.193 4.193 18 N -0.549 5.549 19 Si 0.733 3.267 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.204 1.204 23 C -0.017 4.017 24 C -0.031 4.031 25 O -0.296 6.296 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.335 -6.819 -3.717 11.393 hybrid contribution 1.036 0.559 0.890 1.476 sum -7.299 -6.260 -2.826 10.023 Atomic orbital electron populations 1.21754 0.89204 1.04198 1.04694 1.18843 0.99141 1.00165 0.85427 0.84492 1.28138 0.93667 0.93620 0.93908 1.81167 1.07947 1.08165 1.12060 1.19517 0.78568 0.86467 0.82950 1.90759 1.48824 1.16978 1.84825 1.48490 1.66798 1.11109 1.07563 1.22389 0.99883 0.96763 0.82224 1.23257 1.00611 0.93930 1.00482 1.22630 0.85442 0.98404 0.89178 1.22085 1.02075 0.80610 0.96548 1.21232 1.00424 0.88656 0.86058 1.44045 1.05075 1.78191 1.04283 1.19184 0.92086 1.31802 0.95208 0.91314 1.25019 0.99379 0.97381 0.97567 1.69977 1.32859 1.39419 1.12607 0.86277 0.84694 0.77297 0.78439 1.21322 1.21645 1.20387 1.21592 0.89805 0.93982 0.96361 1.23115 1.00266 0.98403 0.81358 1.87640 1.29728 1.93191 1.19047 0.90077 0.91072 0.89604 0.91239 0.90575 0.89417 0.89242 0.89176 0.89889 0.88357 0.95148 0.93410 0.95504 0.91889 0.89822 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.17 37.16 0.34 -0.70 16 2 C -0.01 -0.11 2.58 -94.56 -0.24 -0.36 16 3 H 0.14 1.00 7.37 -51.93 -0.38 0.62 16 4 C 0.23 2.94 13.97 -20.76 -0.29 2.65 16 5 N -0.42 -6.50 18.54 42.15 0.78 -5.72 16 6 C 0.54 7.34 6.96 -10.99 -0.08 7.26 16 7 O -0.54 -9.40 16.43 5.55 0.09 -9.31 16 8 N -0.61 -8.07 3.33 -170.53 -0.57 -8.64 16 9 C 0.11 1.52 6.94 -2.31 -0.02 1.50 16 10 C -0.14 -2.23 5.93 -24.74 -0.15 -2.38 16 11 C 0.09 1.37 0.83 -89.72 -0.07 1.29 16 12 C 0.11 1.41 5.57 -3.33 -0.02 1.39 16 13 C 0.16 3.33 3.94 -3.85 -0.02 3.32 16 14 N -0.59 -13.18 2.95 -172.17 -0.51 -13.69 16 15 C -0.25 -6.31 9.66 -15.06 -0.15 -6.46 16 16 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 17 C 0.01 0.14 4.98 -17.43 -0.09 0.05 16 18 N -0.90 -23.99 11.10 55.49 0.62 -23.37 16 19 Si 0.90 20.32 29.58 -169.99 -5.03 15.29 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 C 0.11 2.02 6.71 -3.54 -0.02 2.00 16 24 C 0.05 0.71 6.76 37.30 0.25 0.96 16 25 O -0.38 -6.11 10.22 -35.23 -0.36 -6.47 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 28 H 0.09 0.59 7.22 -51.93 -0.37 0.21 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.08 7.99 -51.93 -0.42 0.66 16 31 H 0.09 1.48 7.86 -51.93 -0.41 1.08 16 32 H 0.09 1.39 5.98 -51.93 -0.31 1.08 16 33 H 0.09 1.09 7.56 -51.93 -0.39 0.70 16 34 H 0.08 0.91 7.17 -51.93 -0.37 0.54 16 35 H 0.10 2.26 5.97 -51.93 -0.31 1.95 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 1.12 7.97 -51.93 -0.41 0.71 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.74 6.14 -51.93 -0.32 0.42 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -30.98 333.71 -6.27 -37.25 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.78 Total: -0.91 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -0.54 Total: 10.54 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.32 Total: -51.42 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.27 Total: -15.78 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.98 -6.27 -37.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972297718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.336 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds