Wall clock time and date at job start Tue Mar 31 2020 02:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46873 * 2 1 4 4 C 1.47203 * 109.47321 * 240.00473 * 2 1 3 5 5 N 2.60797 * 109.47207 * 240.00221 * 2 1 3 6 6 C 1.50695 * 109.47432 * 119.99796 * 2 1 3 7 7 O 1.21284 * 119.99788 * 98.51038 * 6 2 1 8 8 N 1.34777 * 120.00356 * 278.23824 * 6 2 1 9 9 C 1.47481 * 125.66622 * 175.25653 * 8 6 2 10 10 C 1.55258 * 104.78354 * 155.91484 * 9 8 6 11 11 C 1.54516 * 101.42478 * 36.67852 * 10 9 8 12 12 C 1.47181 * 125.65861 * 355.56820 * 8 6 2 13 13 C 1.52523 * 110.05696 * 206.74044 * 11 10 9 14 14 N 1.47307 * 108.40893 * 287.85135 * 13 11 10 15 15 C 1.36943 * 121.05830 * 130.60647 * 14 13 11 16 16 H 1.07992 * 119.99852 * 206.34601 * 15 14 13 17 17 C 1.38816 * 119.99884 * 26.35115 * 15 14 13 18 18 N 1.31615 * 120.00003 * 15.63009 * 17 15 14 19 19 Si 1.86795 * 119.99639 * 195.63364 * 17 15 14 20 20 H 1.48495 * 109.47555 * 89.99815 * 19 17 15 21 21 H 1.48500 * 109.47065 * 209.99966 * 19 17 15 22 22 H 1.48506 * 109.47350 * 329.99421 * 19 17 15 23 23 C 1.47159 * 117.87739 * 310.63552 * 14 13 11 24 24 C 1.53282 * 108.54424 * 51.13250 * 23 14 13 25 25 O 1.42062 * 110.33656 * 83.75421 * 11 10 9 26 26 H 1.09002 * 109.47502 * 51.47972 * 1 2 3 27 27 H 1.09004 * 109.46564 * 171.47546 * 1 2 3 28 28 H 1.08997 * 109.47135 * 291.47592 * 1 2 3 29 29 H 1.08998 * 110.35438 * 274.86781 * 9 8 6 30 30 H 1.08998 * 110.34984 * 37.15855 * 9 8 6 31 31 H 1.08998 * 111.21331 * 278.58602 * 10 9 8 32 32 H 1.09000 * 110.90988 * 154.64033 * 10 9 8 33 33 H 1.09007 * 109.91113 * 300.84370 * 12 8 6 34 34 H 1.09004 * 109.91341 * 61.92066 * 12 8 6 35 35 H 1.08995 * 109.67565 * 47.58141 * 13 11 10 36 36 H 1.09001 * 109.67512 * 168.12744 * 13 11 10 37 37 H 0.96998 * 120.00090 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.61853 * 291.41768 * 23 14 13 39 39 H 1.09001 * 109.78092 * 170.94838 * 23 14 13 40 40 H 1.08995 * 109.51444 * 187.15831 * 24 23 14 41 41 H 1.09004 * 109.50742 * 67.00411 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 -1.2019 5 7 2.3994 -1.2293 -2.1294 6 6 2.0324 -0.7103 1.2304 7 8 2.3811 -1.8699 1.1613 8 7 2.0994 -0.0555 2.4065 9 6 2.4751 -0.6513 3.7023 10 6 2.9971 0.5403 4.5497 11 6 2.0505 1.6750 4.0981 12 6 1.8035 1.3715 2.6121 13 6 2.7384 3.0264 4.2617 14 7 2.8198 3.3358 5.6996 15 6 3.9985 3.7362 6.2705 16 1 4.1787 3.5561 7.3199 17 6 4.9615 4.3735 5.5002 18 7 4.6414 4.8680 4.3232 19 14 6.7117 4.5292 6.1341 20 1 7.5022 3.3494 5.7003 21 1 7.3276 5.7654 5.5886 22 1 6.6967 4.5967 7.6176 23 6 1.5944 3.2005 6.5030 24 6 0.9915 1.8154 6.2430 25 8 0.8358 1.6265 4.8332 26 1 -0.3634 0.6400 -0.8040 27 1 -0.3632 -1.0164 -0.1523 28 1 -0.3633 0.3762 0.9563 29 1 1.6054 -1.1053 4.1772 30 1 3.2629 -1.3919 3.5647 31 1 4.0330 0.7747 4.3047 32 1 2.8850 0.3386 5.6150 33 1 2.4638 1.9803 1.9942 34 1 0.7637 1.5757 2.3565 35 1 3.7419 2.9809 3.8386 36 1 2.1594 3.7969 3.7527 37 1 5.3144 5.3130 3.7847 38 1 0.8799 3.9710 6.2134 39 1 1.8341 3.3027 7.5614 40 1 0.0187 1.7445 6.7295 41 1 1.6557 1.0486 6.6418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972297718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:27 Heat of formation + Delta-G solvation = -36.306158 kcal Electronic energy + Delta-G solvation = -24546.899858 eV Core-core repulsion = 21041.317722 eV Total energy + Delta-G solvation = -3505.582136 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.71371 -40.37160 -37.89320 -37.33993 -36.18695 -34.46630 -33.18522 -32.55097 -30.87712 -29.00581 -27.32294 -26.31053 -25.13956 -24.02846 -23.00523 -21.12040 -20.29585 -19.01934 -18.51952 -18.38740 -17.52259 -17.05081 -16.49064 -16.16994 -15.91542 -15.76814 -15.48702 -15.11697 -15.04161 -14.48676 -14.38454 -14.32758 -14.03692 -13.69448 -13.55716 -13.51590 -13.18194 -13.04461 -12.82959 -12.73671 -12.58220 -12.49920 -12.41519 -12.25688 -12.10030 -11.78337 -11.73552 -11.10097 -11.01448 -10.68527 -10.40614 -9.75121 -8.64385 -7.85856 -5.30353 1.27916 1.42250 1.48119 1.51560 1.57518 1.67034 2.05524 2.50850 2.75218 2.84741 3.25260 3.33362 3.47329 3.79586 3.90583 3.94637 4.03299 4.08674 4.30945 4.37291 4.47106 4.57450 4.62790 4.73386 4.76043 4.82398 4.84423 4.89502 4.97796 5.09327 5.13380 5.19735 5.20764 5.27659 5.35507 5.61910 5.68473 6.30250 6.35578 6.45482 6.47267 6.92618 7.14361 7.82663 8.35221 9.19644 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018140 B = 0.004700 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.168907 B = 5955.815667 C = 6676.173439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.005 4.005 3 H 0.172 0.828 4 C 0.244 3.756 5 N -0.469 5.469 6 C 0.540 3.460 7 O -0.581 6.581 8 N -0.603 5.603 9 C 0.115 3.885 10 C -0.139 4.139 11 C 0.091 3.909 12 C 0.114 3.886 13 C 0.172 3.828 14 N -0.611 5.611 15 C -0.257 4.257 16 H 0.068 0.932 17 C -0.041 4.041 18 N -0.931 5.931 19 Si 0.956 3.044 20 H -0.288 1.288 21 H -0.298 1.298 22 H -0.271 1.271 23 C 0.104 3.896 24 C 0.053 3.947 25 O -0.374 6.374 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.009 0.991 37 H 0.250 0.750 38 H 0.020 0.980 39 H 0.067 0.933 40 H 0.119 0.881 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.675 -5.645 -1.645 12.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 H 0.189 0.811 4 C -0.074 4.074 5 N -0.145 5.145 6 C 0.327 3.673 7 O -0.461 6.461 8 N -0.335 5.335 9 C -0.007 4.007 10 C -0.177 4.177 11 C 0.050 3.950 12 C -0.009 4.009 13 C 0.045 3.955 14 N -0.335 5.335 15 C -0.387 4.387 16 H 0.086 0.914 17 C -0.237 4.237 18 N -0.577 5.577 19 Si 0.786 3.214 20 H -0.215 1.215 21 H -0.225 1.225 22 H -0.196 1.196 23 C -0.022 4.022 24 C -0.024 4.024 25 O -0.293 6.293 26 H 0.126 0.874 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.087 0.913 36 H 0.027 0.973 37 H 0.060 0.940 38 H 0.038 0.962 39 H 0.085 0.915 40 H 0.137 0.863 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.996 -7.025 -3.308 12.658 hybrid contribution 1.513 0.664 0.882 1.873 sum -8.483 -6.361 -2.426 10.877 Atomic orbital electron populations 1.21836 0.86650 1.04503 1.06486 1.19105 1.00934 1.00684 0.82131 0.81115 1.28697 0.92334 0.92551 0.93843 1.81180 1.09671 1.09725 1.13908 1.20049 0.77613 0.85985 0.83624 1.90750 1.50826 1.19033 1.85454 1.48469 1.66415 1.11196 1.07446 1.22299 1.00145 0.95849 0.82389 1.23122 0.99339 0.94479 1.00795 1.22382 0.85405 0.95819 0.91426 1.22107 1.04218 0.80263 0.94268 1.21017 0.98935 0.90577 0.84937 1.44309 1.05671 1.78301 1.05248 1.19451 0.93223 1.30712 0.95274 0.91410 1.25595 1.02144 0.97960 0.98006 1.70102 1.33324 1.40679 1.13563 0.85430 0.81261 0.76545 0.78196 1.21479 1.22466 1.19605 1.21775 0.88331 0.95966 0.96113 1.23141 1.02009 0.96049 0.81246 1.87658 1.29331 1.92869 1.19442 0.87444 0.91925 0.88282 0.90004 0.91166 0.91560 0.89294 0.88264 0.86828 0.91305 0.97266 0.94028 0.96169 0.91476 0.86287 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.17 71.98 0.66 -0.86 16 2 C 0.00 -0.08 2.58 -13.35 -0.03 -0.11 16 3 H 0.17 1.82 7.37 -2.39 -0.02 1.80 16 4 C 0.24 6.01 13.97 89.44 1.25 7.26 16 5 N -0.47 -14.38 18.54 20.01 0.37 -14.01 16 6 C 0.54 13.58 6.96 87.66 0.61 14.19 16 7 O -0.58 -19.82 16.43 -3.04 -0.05 -19.87 16 8 N -0.60 -14.64 3.33 -811.84 -2.70 -17.34 16 9 C 0.12 3.00 6.94 86.97 0.60 3.61 16 10 C -0.14 -4.15 5.93 31.88 0.19 -3.96 16 11 C 0.09 2.78 0.83 -10.21 -0.01 2.77 16 12 C 0.11 2.61 5.57 86.47 0.48 3.09 16 13 C 0.17 7.00 3.94 86.07 0.34 7.34 16 14 N -0.61 -27.04 2.95 -698.63 -2.06 -29.10 16 15 C -0.26 -12.80 9.66 84.03 0.81 -11.98 16 16 H 0.07 3.32 7.88 -2.91 -0.02 3.30 16 17 C -0.04 -2.11 4.98 84.86 0.42 -1.69 16 18 N -0.93 -50.26 11.10 21.65 0.24 -50.02 16 19 Si 0.96 42.13 29.58 68.60 2.03 44.16 16 20 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 C 0.10 3.70 6.71 86.35 0.58 4.27 16 24 C 0.05 1.47 6.76 72.08 0.49 1.96 16 25 O -0.37 -10.98 10.22 -148.97 -1.52 -12.51 16 26 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.84 8.11 -2.38 -0.02 0.82 16 28 H 0.10 0.90 7.22 -2.39 -0.02 0.88 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 1.93 7.99 -2.39 -0.02 1.91 16 31 H 0.07 2.26 7.86 -2.39 -0.02 2.24 16 32 H 0.09 2.64 5.98 -2.39 -0.01 2.63 16 33 H 0.10 2.15 7.56 -2.38 -0.02 2.13 16 34 H 0.11 1.98 7.17 -2.38 -0.02 1.97 16 35 H 0.07 3.22 5.97 -2.39 -0.01 3.21 16 36 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 38 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 2.30 7.97 -2.39 -0.02 2.28 16 40 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.05 1.47 6.14 -2.38 -0.01 1.45 16 Total: -1.00 -68.57 333.71 3.74 -64.83 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 1.04 Total: 7.97 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: 6.39 Total: 25.89 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -4.15 Total: -110.47 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -1.57 Total: -32.38 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -68.57 3.74 -64.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972297718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.527 kcal (2) G-P(sol) polarization free energy of solvation -68.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds