Wall clock time and date at job start Tue Mar 31 2020 02:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46825 * 2 1 4 4 C 1.47198 * 109.47223 * 120.00095 * 2 1 3 5 5 N 2.60798 * 109.47196 * 120.00033 * 2 1 3 6 6 C 1.50700 * 109.47101 * 240.00053 * 2 1 3 7 7 O 1.21282 * 119.99988 * 239.99567 * 6 2 1 8 8 N 1.34771 * 120.00036 * 60.00451 * 6 2 1 9 9 C 1.47487 * 125.66692 * 0.02562 * 8 6 2 10 10 C 1.55018 * 104.90006 * 155.95013 * 9 8 6 11 11 C 1.54516 * 101.53380 * 36.37680 * 10 9 8 12 12 C 1.47188 * 125.66736 * 179.97438 * 8 6 2 13 13 C 1.52066 * 110.12215 * 207.08540 * 11 10 9 14 14 N 1.47293 * 108.69854 * 187.41665 * 13 11 10 15 15 C 1.36940 * 121.05832 * 229.26507 * 14 13 11 16 16 H 1.07994 * 119.99865 * 154.09618 * 15 14 13 17 17 C 1.38815 * 119.99895 * 334.10016 * 15 14 13 18 18 N 1.31617 * 119.99699 * 343.39423 * 17 15 14 19 19 Si 1.86793 * 119.99999 * 163.39567 * 17 15 14 20 20 H 1.48498 * 109.47423 * 179.97438 * 19 17 15 21 21 H 1.48506 * 109.47262 * 300.00115 * 19 17 15 22 22 H 1.48502 * 109.46957 * 59.99893 * 19 17 15 23 23 C 1.47161 * 117.88340 * 48.99527 * 14 13 11 24 24 C 1.53293 * 108.49883 * 309.07940 * 23 14 13 25 25 O 1.42060 * 110.33647 * 83.93420 * 11 10 9 26 26 H 1.08997 * 109.46813 * 59.99837 * 1 2 3 27 27 H 1.08994 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47252 * 300.00038 * 1 2 3 29 29 H 1.09002 * 110.35078 * 37.09400 * 9 8 6 30 30 H 1.08997 * 110.44575 * 274.85757 * 9 8 6 31 31 H 1.09003 * 111.01378 * 278.31459 * 10 9 8 32 32 H 1.09007 * 111.01461 * 154.44156 * 10 9 8 33 33 H 1.09002 * 109.90504 * 62.17086 * 12 8 6 34 34 H 1.09000 * 109.90696 * 300.91401 * 12 8 6 35 35 H 1.09000 * 109.57794 * 67.61993 * 13 11 10 36 36 H 1.09002 * 109.46422 * 307.14503 * 13 11 10 37 37 H 0.97003 * 119.99468 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.63584 * 68.77888 * 23 14 13 39 39 H 1.09000 * 109.63350 * 189.37569 * 23 14 13 40 40 H 1.09000 * 109.51361 * 172.90204 * 24 23 14 41 41 H 1.08996 * 109.51095 * 293.05777 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2294 2.1294 6 6 2.0323 -0.7104 -1.2305 7 8 2.7297 -1.6964 -1.1192 8 7 1.7068 -0.2499 -2.4545 9 6 0.8713 0.9329 -2.7342 10 6 1.2936 1.3928 -4.1531 11 6 1.5510 0.0393 -4.8527 12 6 2.1270 -0.8431 -3.7344 13 6 2.5695 0.2126 -5.9685 14 7 2.6585 -1.0473 -6.7264 15 6 3.8709 -1.6197 -7.0055 16 1 3.9403 -2.6850 -7.1685 17 6 5.0105 -0.8306 -7.0789 18 7 4.9000 0.4746 -7.2083 19 14 6.7009 -1.6210 -6.9940 20 1 7.7447 -0.5695 -7.0943 21 1 6.8461 -2.3418 -5.7038 22 1 6.8557 -2.5802 -8.1170 23 6 1.4030 -1.6745 -7.1688 24 6 0.4633 -1.7853 -5.9627 25 8 0.3334 -0.5003 -5.3472 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.0709 1.7188 -2.0058 30 1 -0.1851 0.6644 -2.7213 31 1 2.2032 1.9923 -4.1150 32 1 0.4875 1.9390 -4.6430 33 1 1.7333 -1.8559 -3.8209 34 1 3.2151 -0.8586 -3.7968 35 1 3.5429 0.4522 -5.5405 36 1 2.2492 1.0167 -6.6310 37 1 5.6964 1.0260 -7.2591 38 1 0.9383 -1.0599 -7.9397 39 1 1.6099 -2.6689 -7.5645 40 1 -0.5159 -2.1307 -6.2946 41 1 0.8755 -2.4934 -5.2439 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972297719.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:30 Heat of formation + Delta-G solvation = -36.817255 kcal Electronic energy + Delta-G solvation = -24690.603480 eV Core-core repulsion = 21184.999181 eV Total energy + Delta-G solvation = -3505.604299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76461 -40.36316 -37.85021 -37.43342 -36.26160 -34.55852 -33.26833 -32.69209 -30.37806 -29.23345 -27.61861 -26.22683 -25.02682 -24.36508 -22.59233 -21.48381 -20.23616 -18.96570 -18.57050 -18.39343 -17.59417 -16.96559 -16.68497 -16.13577 -16.11417 -15.70170 -15.49601 -15.21890 -14.98401 -14.62326 -14.46047 -14.17935 -14.10377 -13.79172 -13.44373 -13.32085 -13.21358 -13.06941 -12.93056 -12.74281 -12.58417 -12.44516 -12.33301 -12.20766 -12.14276 -12.05892 -11.73050 -11.13036 -10.99586 -10.75933 -10.49969 -9.72405 -8.72213 -7.92524 -5.36212 1.31536 1.41621 1.43117 1.45324 1.50421 1.68567 2.11467 2.44761 2.76317 2.81303 3.21687 3.35781 3.52837 3.70219 3.81336 3.94052 4.07177 4.16043 4.26644 4.33567 4.44577 4.55884 4.62528 4.70073 4.80748 4.84755 4.87882 4.90165 4.97456 5.06865 5.11357 5.20206 5.25948 5.28552 5.33306 5.54166 5.60985 6.28600 6.35054 6.39424 6.51877 6.97480 7.07607 7.75944 8.27945 9.13111 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.005205 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.856700 B = 5378.090357 C = 6311.894530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.005 3.995 3 H 0.190 0.810 4 C 0.243 3.757 5 N -0.474 5.474 6 C 0.528 3.472 7 O -0.595 6.595 8 N -0.603 5.603 9 C 0.096 3.904 10 C -0.115 4.115 11 C 0.091 3.909 12 C 0.107 3.893 13 C 0.171 3.829 14 N -0.616 5.616 15 C -0.264 4.264 16 H 0.064 0.936 17 C -0.040 4.040 18 N -0.928 5.928 19 Si 0.955 3.045 20 H -0.289 1.289 21 H -0.288 1.288 22 H -0.274 1.274 23 C 0.104 3.896 24 C 0.051 3.949 25 O -0.367 6.367 26 H 0.113 0.887 27 H 0.054 0.946 28 H 0.107 0.893 29 H 0.131 0.869 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.053 0.947 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.012 0.988 37 H 0.252 0.748 38 H 0.026 0.974 39 H 0.065 0.935 40 H 0.124 0.876 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.791 6.757 9.567 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.019 4.019 3 H 0.206 0.794 4 C -0.075 4.075 5 N -0.150 5.150 6 C 0.316 3.684 7 O -0.476 6.476 8 N -0.335 5.335 9 C -0.024 4.024 10 C -0.153 4.153 11 C 0.049 3.951 12 C -0.017 4.017 13 C 0.045 3.955 14 N -0.340 5.340 15 C -0.393 4.393 16 H 0.082 0.918 17 C -0.236 4.236 18 N -0.574 5.574 19 Si 0.784 3.216 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.200 1.200 23 C -0.021 4.021 24 C -0.027 4.027 25 O -0.286 6.286 26 H 0.132 0.868 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.149 0.851 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.134 0.866 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.030 0.970 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.083 0.917 40 H 0.142 0.858 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.884 5.608 11.070 18.622 hybrid contribution 1.828 -0.874 -0.966 2.245 sum -12.057 4.734 10.104 16.427 Atomic orbital electron populations 1.22047 0.86639 1.04357 1.07286 1.19099 1.00865 1.00949 0.81001 0.79353 1.28811 0.92161 0.92662 0.93875 1.81178 1.09703 1.09521 1.14565 1.20457 0.79718 0.84085 0.84146 1.90782 1.40749 1.29264 1.86809 1.48525 1.50686 1.30402 1.03874 1.22983 0.95770 0.86628 0.97065 1.22823 1.04240 0.93572 0.94648 1.22390 0.86011 0.94534 0.92117 1.22150 0.98609 0.97489 0.83412 1.20967 0.96819 0.87109 0.90648 1.44368 1.01453 1.25755 1.62453 1.19407 0.85491 0.91508 1.42942 0.91782 1.25576 1.01067 0.96095 1.00880 1.70112 1.28551 1.04427 1.54282 0.85530 0.80558 0.77580 0.77959 1.21486 1.21524 1.19991 1.21775 0.87277 0.97537 0.95533 1.23111 1.00927 0.84717 0.93911 1.87668 1.29709 1.34643 1.76546 0.86844 0.92697 0.87438 0.85099 0.87661 0.89082 0.86636 0.92837 0.94058 0.91763 0.97044 0.93882 0.95650 0.91660 0.85797 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.96 71.98 0.64 -0.49 16 2 C 0.00 0.07 2.45 -13.35 -0.03 0.04 16 3 H 0.19 1.02 7.85 -2.38 -0.02 1.00 16 4 C 0.24 5.88 13.88 89.44 1.24 7.12 16 5 N -0.47 -14.65 18.54 20.01 0.37 -14.27 16 6 C 0.53 14.22 7.20 87.66 0.63 14.85 16 7 O -0.60 -23.68 16.36 -3.04 -0.05 -23.73 16 8 N -0.60 -15.27 3.33 -812.31 -2.70 -17.97 16 9 C 0.10 1.39 5.14 86.88 0.45 1.84 16 10 C -0.11 -2.51 6.21 31.80 0.20 -2.31 16 11 C 0.09 3.03 0.80 -10.36 -0.01 3.02 16 12 C 0.11 3.79 5.96 86.47 0.52 4.30 16 13 C 0.17 7.62 3.94 85.92 0.34 7.96 16 14 N -0.62 -29.89 2.99 -699.51 -2.09 -31.98 16 15 C -0.26 -14.32 9.66 84.03 0.81 -13.51 16 16 H 0.06 3.44 7.88 -2.91 -0.02 3.42 16 17 C -0.04 -2.21 4.96 84.86 0.42 -1.78 16 18 N -0.93 -52.89 11.13 21.65 0.24 -52.65 16 19 Si 0.96 45.22 29.58 68.60 2.03 47.25 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 23 C 0.10 4.10 6.72 86.35 0.58 4.68 16 24 C 0.05 1.61 6.76 72.08 0.49 2.10 16 25 O -0.37 -11.68 10.25 -148.97 -1.53 -13.20 16 26 H 0.11 0.39 5.00 -2.39 -0.01 0.38 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.13 0.64 7.37 -2.39 -0.02 0.63 16 30 H 0.11 1.09 7.07 -2.39 -0.02 1.08 16 31 H 0.09 2.06 8.01 -2.39 -0.02 2.04 16 32 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.05 2.07 6.03 -2.39 -0.01 2.06 16 34 H 0.04 1.81 7.59 -2.39 -0.02 1.80 16 35 H 0.06 3.28 5.88 -2.39 -0.01 3.27 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 38 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 39 H 0.06 2.49 7.96 -2.39 -0.02 2.47 16 40 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 41 H 0.04 1.35 6.24 -2.39 -0.01 1.34 16 Total: -1.00 -80.00 330.17 3.59 -76.41 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: 1.05 Total: 2.33 kcal Atomic # 6 Polarization: 21.54 SS G_CDS: 6.27 Total: 27.81 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -4.18 Total: -116.87 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -1.58 Total: -36.93 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -80.00 3.59 -76.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972297719.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.592 kcal (2) G-P(sol) polarization free energy of solvation -80.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds