Wall clock time and date at job start Tue Mar 31 2020 02:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47471 * 2 1 4 4 C 1.47208 * 109.47187 * 240.00363 * 2 1 3 5 5 N 2.60802 * 109.47025 * 240.00167 * 2 1 3 6 6 C 1.50701 * 109.47161 * 120.00394 * 2 1 3 7 7 O 1.21279 * 119.99992 * 92.50131 * 6 2 1 8 8 N 1.34779 * 120.00056 * 272.49624 * 6 2 1 9 9 C 1.47085 * 125.62878 * 177.18271 * 8 6 2 10 10 C 1.54461 * 107.29229 * 178.99919 * 9 8 6 11 11 C 1.54371 * 102.87186 * 338.50224 * 10 9 8 12 12 C 1.47571 * 125.62455 * 357.16188 * 8 6 2 13 13 C 1.52357 * 110.38093 * 152.41754 * 11 10 9 14 14 N 1.47332 * 108.43984 * 73.36850 * 13 11 10 15 15 C 1.36942 * 121.07876 * 229.18218 * 14 13 11 16 16 H 1.08001 * 119.99420 * 155.01497 * 15 14 13 17 17 C 1.38806 * 120.00255 * 335.01923 * 15 14 13 18 18 N 1.31621 * 119.99906 * 341.59952 * 17 15 14 19 19 Si 1.86801 * 119.99894 * 161.59443 * 17 15 14 20 20 H 1.48500 * 109.46908 * 90.00395 * 19 17 15 21 21 H 1.48502 * 109.47064 * 210.00126 * 19 17 15 22 22 H 1.48495 * 109.47375 * 330.00364 * 19 17 15 23 23 C 1.47245 * 117.79401 * 49.16935 * 14 13 11 24 24 C 1.53278 * 108.58549 * 308.78910 * 23 14 13 25 25 O 1.41887 * 110.71175 * 276.30394 * 11 10 9 26 26 H 1.09004 * 109.47241 * 185.04280 * 1 2 3 27 27 H 1.09005 * 109.46813 * 305.04019 * 1 2 3 28 28 H 1.09000 * 109.46961 * 65.04131 * 1 2 3 29 29 H 1.09000 * 109.87764 * 59.57693 * 9 8 6 30 30 H 1.08997 * 110.00338 * 298.49548 * 9 8 6 31 31 H 1.08995 * 110.73182 * 220.15152 * 10 9 8 32 32 H 1.09003 * 110.88337 * 96.91543 * 10 9 8 33 33 H 1.09004 * 110.37976 * 84.49931 * 12 8 6 34 34 H 1.08999 * 110.37818 * 322.14656 * 12 8 6 35 35 H 1.08998 * 109.67666 * 193.11885 * 13 11 10 36 36 H 1.09003 * 109.68109 * 313.62399 * 13 11 10 37 37 H 0.97002 * 119.99808 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.60331 * 189.06670 * 23 14 13 39 39 H 1.08993 * 109.76832 * 68.61571 * 23 14 13 40 40 H 1.08993 * 109.51624 * 293.07907 * 24 23 14 41 41 H 1.09000 * 109.51541 * 172.92082 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 -1.2020 5 7 2.3993 -1.2294 -2.1295 6 6 2.0323 -0.7105 1.2304 7 8 2.2777 -1.8974 1.1876 8 7 2.2090 -0.0269 2.3784 9 6 2.6352 -0.6040 3.6624 10 6 2.7245 0.5549 4.6797 11 6 2.8723 1.7965 3.7743 12 6 2.0072 1.4244 2.5544 13 6 2.3126 3.0306 4.4708 14 7 3.2499 3.4305 5.5348 15 6 2.8090 3.6873 6.8056 16 1 3.4832 3.5818 7.6427 17 6 1.4956 4.0831 7.0178 18 7 0.7821 4.5590 6.0193 19 14 0.7405 3.9402 8.7205 20 1 0.9794 5.1967 9.4749 21 1 -0.7209 3.7078 8.5960 22 1 1.3628 2.8025 9.4440 23 6 4.6760 3.5445 5.1864 24 6 5.1131 2.2521 4.4877 25 8 4.2270 1.9836 3.3963 26 1 -0.3634 -1.0237 0.0903 27 1 -0.3633 0.5901 0.8415 28 1 -0.3633 0.4336 -0.9317 29 1 3.6117 -1.0754 3.5510 30 1 1.9054 -1.3392 4.0013 31 1 3.5981 0.4389 5.3211 32 1 1.8148 0.6188 5.2768 33 1 0.9575 1.6402 2.7536 34 1 2.3456 1.9646 1.6703 35 1 2.2068 3.8421 3.7508 36 1 1.3410 2.7975 4.9063 37 1 -0.1358 4.8352 6.1676 38 1 5.2638 3.6871 6.0932 39 1 4.8253 4.3913 4.5166 40 1 5.0781 1.4251 5.1968 41 1 6.1295 2.3674 4.1115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972297720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:33 Heat of formation + Delta-G solvation = -15.729177 kcal Electronic energy + Delta-G solvation = -24540.679546 eV Core-core repulsion = 21035.989695 eV Total energy + Delta-G solvation = -3504.689851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.54676 -39.11304 -36.78329 -36.11296 -34.56031 -33.53618 -31.49142 -31.26666 -29.73817 -27.53291 -25.90579 -25.40762 -23.64941 -22.81527 -21.51238 -20.08648 -18.83890 -17.70161 -17.48300 -17.04459 -16.21806 -15.73130 -15.35177 -14.68719 -14.51405 -14.44880 -14.28699 -13.77279 -13.49772 -13.35963 -13.18968 -13.00322 -12.82260 -12.71589 -12.56251 -12.39843 -12.16308 -11.95653 -11.69655 -11.38076 -11.18026 -10.96302 -10.94316 -10.77108 -10.39176 -10.37831 -10.09153 -9.90545 -9.65621 -9.17422 -8.64994 -8.60516 -6.87226 -5.95975 -3.36331 2.29457 2.45870 2.67539 3.09277 3.27264 3.35735 3.37066 3.69810 4.04017 4.28175 4.34733 4.65884 4.72367 4.83546 4.95470 5.20362 5.30144 5.32067 5.34113 5.40614 5.46163 5.58168 5.71286 5.72828 5.78888 5.82252 5.91123 6.04253 6.19928 6.23608 6.27266 6.44159 6.52565 6.68642 6.92736 7.27444 7.33749 7.47548 7.62314 7.79318 8.00708 8.20327 8.99844 9.63037 10.19731 11.12814 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022238 B = 0.004391 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.801001 B = 6375.689613 C = 6819.935369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.011 4.011 3 H 0.136 0.864 4 C 0.226 3.774 5 N -0.419 5.419 6 C 0.539 3.461 7 O -0.538 6.538 8 N -0.603 5.603 9 C 0.113 3.887 10 C -0.145 4.145 11 C 0.085 3.915 12 C 0.109 3.891 13 C 0.163 3.837 14 N -0.592 5.592 15 C -0.253 4.253 16 H 0.069 0.931 17 C 0.005 3.995 18 N -0.903 5.903 19 Si 0.901 3.099 20 H -0.287 1.287 21 H -0.288 1.288 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.047 3.953 25 O -0.375 6.375 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.098 0.902 37 H 0.256 0.744 38 H 0.063 0.937 39 H 0.027 0.973 40 H 0.048 0.952 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.021 -4.518 -5.987 7.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.036 4.036 3 H 0.154 0.846 4 C -0.093 4.093 5 N -0.094 5.094 6 C 0.324 3.676 7 O -0.415 6.415 8 N -0.336 5.336 9 C -0.009 4.009 10 C -0.183 4.183 11 C 0.043 3.957 12 C -0.013 4.013 13 C 0.036 3.964 14 N -0.316 5.316 15 C -0.382 4.382 16 H 0.087 0.913 17 C -0.194 4.194 18 N -0.547 5.547 19 Si 0.730 3.270 20 H -0.213 1.213 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.017 4.017 24 C -0.031 4.031 25 O -0.294 6.294 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.116 0.884 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.567 -5.948 -7.632 9.692 hybrid contribution -0.536 0.381 1.593 1.723 sum 0.031 -5.568 -6.039 8.214 Atomic orbital electron populations 1.21742 0.89111 1.04386 1.04551 1.18856 0.99181 1.00078 0.85462 0.84615 1.28165 0.93651 0.93591 0.93931 1.81167 1.08036 1.08165 1.12055 1.19507 0.78357 0.86772 0.82936 1.90754 1.51452 1.15196 1.84065 1.48477 1.66103 1.09593 1.09429 1.22011 0.99989 0.96616 0.82285 1.23065 1.04423 0.93558 0.97211 1.22687 0.83387 0.96913 0.92759 1.22403 1.00141 0.79547 0.99253 1.21146 0.94945 0.90366 0.89921 1.44083 1.00797 1.78842 1.07867 1.19155 0.95738 1.40121 0.83201 0.91334 1.24965 0.98592 0.98512 0.97338 1.70019 1.09806 1.44066 1.30804 0.86326 0.78506 0.78102 0.84043 1.21346 1.21428 1.20434 1.21603 0.87726 0.94508 0.97911 1.23106 0.92315 0.98233 0.89442 1.87626 1.17104 1.91716 1.32931 0.90967 0.89510 0.90237 0.91568 0.91457 0.89458 0.89277 0.88776 0.89541 0.95113 0.88383 0.93443 0.91895 0.95488 0.93359 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.13 37.16 0.34 -0.69 16 2 C -0.01 -0.11 2.67 -94.56 -0.25 -0.37 16 3 H 0.14 1.00 6.61 -51.93 -0.34 0.66 16 4 C 0.23 2.92 14.05 -20.76 -0.29 2.63 16 5 N -0.42 -6.45 18.54 42.15 0.78 -5.67 16 6 C 0.54 7.33 6.91 -10.98 -0.08 7.25 16 7 O -0.54 -9.41 16.62 5.56 0.09 -9.32 16 8 N -0.60 -8.02 3.33 -170.77 -0.57 -8.59 16 9 C 0.11 1.57 6.88 -2.96 -0.02 1.55 16 10 C -0.14 -2.19 5.87 -25.25 -0.15 -2.34 16 11 C 0.08 1.36 0.84 -89.65 -0.08 1.29 16 12 C 0.11 1.39 5.81 -2.88 -0.02 1.37 16 13 C 0.16 3.29 4.08 -3.92 -0.02 3.27 16 14 N -0.59 -13.15 2.98 -172.19 -0.51 -13.66 16 15 C -0.25 -6.25 9.66 -15.06 -0.15 -6.40 16 16 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 17 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 18 N -0.90 -23.55 11.18 55.49 0.62 -22.93 16 19 Si 0.90 19.91 29.59 -169.99 -5.03 14.88 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 23 C 0.11 2.05 6.72 -3.49 -0.02 2.02 16 24 C 0.05 0.75 6.78 37.30 0.25 1.00 16 25 O -0.37 -6.35 10.28 -35.22 -0.36 -6.71 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.37 6.07 -51.93 -0.32 1.05 16 32 H 0.09 1.40 7.82 -51.93 -0.41 1.00 16 33 H 0.09 1.06 7.99 -51.93 -0.42 0.65 16 34 H 0.09 0.96 6.87 -51.93 -0.36 0.60 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 2.18 5.94 -51.93 -0.31 1.87 16 37 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 38 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.76 6.22 -51.93 -0.32 0.44 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -30.98 335.02 -6.30 -37.29 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.81 Total: -0.97 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -0.56 Total: 10.63 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.32 Total: -50.86 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.27 Total: -16.02 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.98 -6.30 -37.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972297720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.560 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds