Wall clock time and date at job start Tue Mar 31 2020 02:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47471 * 2 1 4 4 C 1.47208 * 109.47187 * 240.00363 * 2 1 3 5 5 N 2.60802 * 109.47025 * 240.00167 * 2 1 3 6 6 C 1.50701 * 109.47161 * 120.00394 * 2 1 3 7 7 O 1.21279 * 119.99992 * 92.50131 * 6 2 1 8 8 N 1.34779 * 120.00056 * 272.49624 * 6 2 1 9 9 C 1.47085 * 125.62878 * 177.18271 * 8 6 2 10 10 C 1.54461 * 107.29229 * 178.99919 * 9 8 6 11 11 C 1.54371 * 102.87186 * 338.50224 * 10 9 8 12 12 C 1.47571 * 125.62455 * 357.16188 * 8 6 2 13 13 C 1.52357 * 110.38093 * 152.41754 * 11 10 9 14 14 N 1.47332 * 108.43984 * 73.36850 * 13 11 10 15 15 C 1.36942 * 121.07876 * 229.18218 * 14 13 11 16 16 H 1.08001 * 119.99420 * 155.01497 * 15 14 13 17 17 C 1.38806 * 120.00255 * 335.01923 * 15 14 13 18 18 N 1.31621 * 119.99906 * 341.59952 * 17 15 14 19 19 Si 1.86801 * 119.99894 * 161.59443 * 17 15 14 20 20 H 1.48500 * 109.46908 * 90.00395 * 19 17 15 21 21 H 1.48502 * 109.47064 * 210.00126 * 19 17 15 22 22 H 1.48495 * 109.47375 * 330.00364 * 19 17 15 23 23 C 1.47245 * 117.79401 * 49.16935 * 14 13 11 24 24 C 1.53278 * 108.58549 * 308.78910 * 23 14 13 25 25 O 1.41887 * 110.71175 * 276.30394 * 11 10 9 26 26 H 1.09004 * 109.47241 * 185.04280 * 1 2 3 27 27 H 1.09005 * 109.46813 * 305.04019 * 1 2 3 28 28 H 1.09000 * 109.46961 * 65.04131 * 1 2 3 29 29 H 1.09000 * 109.87764 * 59.57693 * 9 8 6 30 30 H 1.08997 * 110.00338 * 298.49548 * 9 8 6 31 31 H 1.08995 * 110.73182 * 220.15152 * 10 9 8 32 32 H 1.09003 * 110.88337 * 96.91543 * 10 9 8 33 33 H 1.09004 * 110.37976 * 84.49931 * 12 8 6 34 34 H 1.08999 * 110.37818 * 322.14656 * 12 8 6 35 35 H 1.08998 * 109.67666 * 193.11885 * 13 11 10 36 36 H 1.09003 * 109.68109 * 313.62399 * 13 11 10 37 37 H 0.97002 * 119.99808 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.60331 * 189.06670 * 23 14 13 39 39 H 1.08993 * 109.76832 * 68.61571 * 23 14 13 40 40 H 1.08993 * 109.51624 * 293.07907 * 24 23 14 41 41 H 1.09000 * 109.51541 * 172.92082 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 -1.2020 5 7 2.3993 -1.2294 -2.1295 6 6 2.0323 -0.7105 1.2304 7 8 2.2777 -1.8974 1.1876 8 7 2.2090 -0.0269 2.3784 9 6 2.6352 -0.6040 3.6624 10 6 2.7245 0.5549 4.6797 11 6 2.8723 1.7965 3.7743 12 6 2.0072 1.4244 2.5544 13 6 2.3126 3.0306 4.4708 14 7 3.2499 3.4305 5.5348 15 6 2.8090 3.6873 6.8056 16 1 3.4832 3.5818 7.6427 17 6 1.4956 4.0831 7.0178 18 7 0.7821 4.5590 6.0193 19 14 0.7405 3.9402 8.7205 20 1 0.9794 5.1967 9.4749 21 1 -0.7209 3.7078 8.5960 22 1 1.3628 2.8025 9.4440 23 6 4.6760 3.5445 5.1864 24 6 5.1131 2.2521 4.4877 25 8 4.2270 1.9836 3.3963 26 1 -0.3634 -1.0237 0.0903 27 1 -0.3633 0.5901 0.8415 28 1 -0.3633 0.4336 -0.9317 29 1 3.6117 -1.0754 3.5510 30 1 1.9054 -1.3392 4.0013 31 1 3.5981 0.4389 5.3211 32 1 1.8148 0.6188 5.2768 33 1 0.9575 1.6402 2.7536 34 1 2.3456 1.9646 1.6703 35 1 2.2068 3.8421 3.7508 36 1 1.3410 2.7975 4.9063 37 1 -0.1358 4.8352 6.1676 38 1 5.2638 3.6871 6.0932 39 1 4.8253 4.3913 4.5166 40 1 5.0781 1.4251 5.1968 41 1 6.1295 2.3674 4.1115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972297720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:32 Heat of formation + Delta-G solvation = -35.942900 kcal Electronic energy + Delta-G solvation = -24541.556079 eV Core-core repulsion = 21035.989695 eV Total energy + Delta-G solvation = -3505.566384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.70913 -40.36010 -37.89561 -37.34527 -36.18118 -34.44318 -33.17631 -32.60551 -30.93015 -29.02522 -27.28595 -26.31320 -25.13454 -24.03150 -23.00078 -21.17051 -20.23173 -18.95897 -18.61292 -18.36342 -17.51989 -16.97803 -16.68748 -16.12995 -15.86550 -15.72262 -15.45793 -15.09744 -15.02955 -14.49257 -14.38213 -14.34073 -14.10163 -13.67552 -13.64132 -13.57898 -13.14778 -13.04859 -12.80447 -12.74663 -12.60692 -12.42936 -12.35089 -12.17097 -12.11673 -11.80843 -11.75062 -11.12893 -10.98416 -10.69536 -10.39311 -9.73805 -8.65047 -7.84292 -5.26252 1.26077 1.45552 1.50667 1.55056 1.62014 1.66803 2.06461 2.53775 2.78831 2.80626 3.25485 3.34166 3.48555 3.78514 3.91433 3.96422 4.00622 4.09583 4.24722 4.35680 4.44874 4.54434 4.66558 4.74286 4.77080 4.81727 4.83460 4.87299 4.98308 5.04628 5.12421 5.18547 5.24563 5.26986 5.34095 5.61940 5.70432 6.30889 6.36288 6.45239 6.47145 6.94294 7.15729 7.83434 8.36931 9.21892 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022238 B = 0.004391 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.801001 B = 6375.689613 C = 6819.935369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.003 4.003 3 H 0.172 0.828 4 C 0.244 3.756 5 N -0.468 5.468 6 C 0.539 3.461 7 O -0.581 6.581 8 N -0.600 5.600 9 C 0.118 3.882 10 C -0.137 4.137 11 C 0.086 3.914 12 C 0.114 3.886 13 C 0.173 3.827 14 N -0.610 5.610 15 C -0.260 4.260 16 H 0.066 0.934 17 C -0.039 4.039 18 N -0.927 5.927 19 Si 0.956 3.044 20 H -0.291 1.291 21 H -0.291 1.291 22 H -0.273 1.273 23 C 0.105 3.895 24 C 0.053 3.947 25 O -0.379 6.379 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.009 0.991 36 H 0.075 0.925 37 H 0.252 0.748 38 H 0.066 0.934 39 H 0.019 0.981 40 H 0.051 0.949 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 -4.500 -6.330 7.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 H 0.189 0.811 4 C -0.075 4.075 5 N -0.144 5.144 6 C 0.327 3.673 7 O -0.461 6.461 8 N -0.331 5.331 9 C -0.004 4.004 10 C -0.175 4.175 11 C 0.044 3.956 12 C -0.009 4.009 13 C 0.047 3.953 14 N -0.335 5.335 15 C -0.390 4.390 16 H 0.084 0.916 17 C -0.235 4.235 18 N -0.573 5.573 19 Si 0.785 3.215 20 H -0.218 1.218 21 H -0.217 1.217 22 H -0.198 1.198 23 C -0.021 4.021 24 C -0.024 4.024 25 O -0.298 6.298 26 H 0.079 0.921 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.027 0.973 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.453 -5.925 -7.977 9.947 hybrid contribution -0.428 0.431 1.761 1.863 sum 0.024 -5.494 -6.216 8.296 Atomic orbital electron populations 1.21830 0.86784 1.04355 1.06585 1.19100 1.00802 1.00649 0.82190 0.81138 1.28707 0.92348 0.92545 0.93867 1.81181 1.09728 1.09668 1.13853 1.20045 0.77398 0.86308 0.83595 1.90745 1.53388 1.17231 1.84748 1.48453 1.65707 1.09745 1.09221 1.21907 1.00029 0.96138 0.82376 1.22931 1.03686 0.93653 0.97206 1.22540 0.83458 0.95210 0.94383 1.22474 1.00498 0.79153 0.98728 1.20945 0.94021 0.91368 0.88998 1.44343 1.02418 1.79100 1.07615 1.19404 0.95888 1.39243 0.84445 0.91622 1.25536 0.99044 0.98909 0.99990 1.70132 1.09730 1.45299 1.32174 0.85457 0.77476 0.77741 0.80812 1.21849 1.21691 1.19841 1.21747 0.86107 0.95926 0.98285 1.23105 0.93458 0.96493 0.89340 1.87636 1.17287 1.91547 1.33287 0.92084 0.87667 0.88040 0.92158 0.90709 0.90095 0.90156 0.86922 0.87077 0.97260 0.90656 0.93866 0.91540 0.96254 0.93033 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.13 71.98 0.66 -0.91 16 2 C 0.00 -0.06 2.67 -13.34 -0.04 -0.09 16 3 H 0.17 1.72 6.61 -2.39 -0.02 1.71 16 4 C 0.24 5.87 14.05 89.44 1.26 7.13 16 5 N -0.47 -14.06 18.54 20.01 0.37 -13.69 16 6 C 0.54 13.46 6.91 87.66 0.61 14.06 16 7 O -0.58 -19.71 16.62 -3.03 -0.05 -19.76 16 8 N -0.60 -14.45 3.33 -812.57 -2.71 -17.16 16 9 C 0.12 3.09 6.88 86.76 0.60 3.68 16 10 C -0.14 -3.97 5.87 31.56 0.19 -3.79 16 11 C 0.09 2.63 0.84 -10.17 -0.01 2.62 16 12 C 0.11 2.55 5.81 86.55 0.50 3.06 16 13 C 0.17 6.91 4.08 86.01 0.35 7.26 16 14 N -0.61 -26.95 2.98 -698.68 -2.08 -29.04 16 15 C -0.26 -12.84 9.66 84.03 0.81 -12.03 16 16 H 0.07 3.21 7.89 -2.91 -0.02 3.18 16 17 C -0.04 -1.94 4.92 84.86 0.42 -1.52 16 18 N -0.93 -48.71 11.18 21.65 0.24 -48.47 16 19 Si 0.96 40.94 29.59 68.60 2.03 42.97 16 20 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 C 0.10 3.85 6.72 86.33 0.58 4.43 16 24 C 0.05 1.60 6.78 72.08 0.49 2.09 16 25 O -0.38 -11.96 10.28 -148.95 -1.53 -13.49 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 2.45 6.07 -2.39 -0.01 2.44 16 32 H 0.08 2.48 7.82 -2.39 -0.02 2.46 16 33 H 0.11 2.18 7.99 -2.38 -0.02 2.16 16 34 H 0.11 1.99 6.87 -2.39 -0.02 1.98 16 35 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.08 3.36 5.94 -2.39 -0.01 3.34 16 37 H 0.25 12.89 8.31 -92.71 -0.77 12.12 16 38 H 0.07 2.34 7.96 -2.39 -0.02 2.32 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.05 1.53 6.22 -2.39 -0.01 1.51 16 41 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -67.67 335.02 3.72 -63.95 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.04 Total: 8.69 kcal Atomic # 6 Polarization: 19.58 SS G_CDS: 6.41 Total: 25.99 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -4.18 Total: -108.35 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -1.58 Total: -33.25 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -67.67 3.72 -63.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972297720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.007 kcal (2) G-P(sol) polarization free energy of solvation -67.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds