Wall clock time and date at job start Tue Mar 31 2020 03:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.28715 * 126.03296 * 2 1 4 4 N 1.28517 * 110.63332 * 179.97438 * 3 2 1 5 5 C 1.33320 * 109.44085 * 0.02562 * 4 3 2 6 6 C 1.37004 * 106.36975 * 359.97438 * 5 4 3 7 7 C 1.47244 * 127.18541 * 180.02562 * 6 5 4 8 8 O 1.21616 * 119.99642 * 185.58298 * 7 6 5 9 9 N 1.34772 * 120.00097 * 5.57601 * 7 6 5 10 10 C 1.46497 * 120.00207 * 185.15288 * 9 7 6 11 11 H 1.09001 * 110.88836 * 325.70709 * 10 9 7 12 12 C 1.54914 * 111.00154 * 89.58609 * 10 9 7 13 13 N 1.47523 * 104.78536 * 81.09122 * 12 10 9 14 14 C 1.36938 * 125.63954 * 204.08682 * 13 12 10 15 15 H 1.07996 * 120.00267 * 180.02562 * 14 13 12 16 16 C 1.38811 * 119.99380 * 0.03621 * 14 13 12 17 17 N 1.31620 * 120.00397 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99675 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47353 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46984 * 119.99699 * 18 16 14 21 21 H 1.48499 * 109.47528 * 239.99886 * 18 16 14 22 22 C 1.47026 * 108.71266 * 24.11658 * 13 12 10 23 23 C 1.54322 * 107.27347 * 358.94405 * 22 13 12 24 24 C 1.52997 * 110.71920 * 219.44356 * 23 22 13 25 25 C 1.53004 * 110.71710 * 96.16949 * 23 22 13 26 26 H 1.09001 * 109.46399 * 85.83509 * 1 2 3 27 27 H 1.08999 * 109.46909 * 205.83367 * 1 2 3 28 28 H 1.08996 * 109.47284 * 325.83368 * 1 2 3 29 29 H 1.07999 * 126.81356 * 179.74113 * 5 4 3 30 30 H 0.97008 * 120.00128 * 5.15509 * 9 7 6 31 31 H 1.09004 * 110.36201 * 199.90473 * 12 10 9 32 32 H 1.08996 * 110.36401 * 322.22575 * 12 10 9 33 33 H 0.96999 * 119.99750 * 180.02562 * 17 16 14 34 34 H 1.09005 * 109.88061 * 239.52330 * 22 13 12 35 35 H 1.09005 * 110.00687 * 118.43783 * 22 13 12 36 36 H 1.08995 * 109.47136 * 173.52467 * 24 23 22 37 37 H 1.09001 * 109.47150 * 293.52372 * 24 23 22 38 38 H 1.08997 * 109.47647 * 53.52347 * 24 23 22 39 39 H 1.08998 * 109.46876 * 306.47797 * 25 23 22 40 40 H 1.09002 * 109.46917 * 66.47677 * 25 23 22 41 41 H 1.09000 * 109.46837 * 186.47894 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4613 0.6996 0.0005 5 6 3.5552 -0.6303 0.0004 6 6 2.2712 -1.1081 0.0003 7 6 1.8463 -2.5179 0.0006 8 8 0.6671 -2.7975 -0.1020 9 7 2.7640 -3.4983 0.1144 10 6 2.3555 -4.9006 0.0016 11 1 1.3595 -5.0501 0.4184 12 6 2.4195 -5.3808 -1.4698 13 7 3.8409 -5.7019 -1.6997 14 6 4.4691 -5.7160 -2.9164 15 1 5.5179 -5.9654 -2.9797 16 6 3.7577 -5.4094 -4.0682 17 7 2.4796 -5.1046 -3.9909 18 14 4.6144 -5.4293 -5.7281 19 1 6.0405 -5.8009 -5.5447 20 1 3.9547 -6.4222 -6.6137 21 1 4.5290 -4.0815 -6.3455 22 6 4.4711 -6.0048 -0.4063 23 6 3.3891 -5.8373 0.6811 24 6 3.9757 -5.1795 1.9317 25 6 2.7535 -7.1861 1.0246 26 1 -0.3632 0.0746 -1.0250 27 1 -0.3633 -0.9250 0.4478 28 1 -0.3633 0.8503 0.5771 29 1 4.4633 -1.2149 -0.0032 30 1 3.6950 -3.2754 0.2711 31 1 1.8030 -6.2695 -1.6059 32 1 2.0955 -4.5867 -2.1424 33 1 1.9825 -4.8908 -4.7960 34 1 5.2919 -5.3115 -0.2225 35 1 4.8438 -7.0291 -0.4039 36 1 3.1749 -4.9664 2.6397 37 1 4.6979 -5.8537 2.3921 38 1 4.4723 -4.2497 1.6542 39 1 2.3944 -7.6614 0.1118 40 1 3.4960 -7.8270 1.5000 41 1 1.9175 -7.0306 1.7065 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974543498.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:44 Heat of formation + Delta-G solvation = 92.926952 kcal Electronic energy + Delta-G solvation = -24655.258289 eV Core-core repulsion = 21187.572872 eV Total energy + Delta-G solvation = -3467.685416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.21229 -39.77021 -37.96334 -34.73161 -33.89526 -33.25209 -31.28870 -30.74746 -28.31360 -27.95369 -26.89448 -25.67728 -24.24867 -23.13186 -22.15636 -20.62800 -19.99089 -18.93807 -17.75972 -16.83104 -16.74116 -16.52909 -15.90539 -14.79699 -14.76387 -14.22518 -14.09490 -13.83074 -13.79561 -13.33769 -13.23969 -12.99719 -12.84304 -12.27975 -12.05185 -11.98542 -11.82385 -11.38172 -11.24522 -11.09481 -11.07788 -10.83332 -10.50763 -10.25885 -10.18145 -10.05624 -9.89563 -9.82024 -9.75652 -9.42897 -8.76231 -8.53531 -6.87725 -5.69318 -3.11862 1.03883 2.15491 2.37105 3.24043 3.37083 3.41870 3.42860 3.45414 4.38155 4.44551 4.59017 4.81312 4.88138 5.02727 5.07265 5.15894 5.21098 5.35547 5.47149 5.54079 5.62876 5.69946 5.81548 5.94503 5.98905 6.02600 6.09544 6.17891 6.30067 6.40527 6.42625 6.51119 6.56014 6.64359 6.85896 7.36663 7.56810 7.69008 7.82570 8.29896 8.31411 8.40781 9.16178 9.77950 10.40937 11.33805 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.006103 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.820181 B = 4586.646373 C = 5815.767185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.257 5.257 3 N -0.069 5.069 4 N -0.275 5.275 5 C 0.000 4.000 6 C -0.058 4.058 7 C 0.595 3.405 8 O -0.541 6.541 9 N -0.681 5.681 10 C 0.124 3.876 11 H 0.092 0.908 12 C 0.146 3.854 13 N -0.601 5.601 14 C -0.224 4.224 15 H 0.078 0.922 16 C -0.009 4.009 17 N -0.918 5.918 18 Si 0.912 3.088 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.142 3.858 23 C -0.086 4.086 24 C -0.132 4.132 25 C -0.128 4.128 26 H 0.095 0.905 27 H 0.117 0.883 28 H 0.098 0.902 29 H 0.197 0.803 30 H 0.400 0.600 31 H 0.024 0.976 32 H 0.113 0.887 33 H 0.252 0.748 34 H 0.023 0.977 35 H 0.025 0.975 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.777 3.818 12.450 13.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.054 5.054 3 N -0.050 5.050 4 N -0.138 5.138 5 C -0.160 4.160 6 C -0.192 4.192 7 C 0.379 3.621 8 O -0.419 6.419 9 N -0.330 5.330 10 C 0.019 3.981 11 H 0.110 0.890 12 C 0.020 3.980 13 N -0.327 5.327 14 C -0.352 4.352 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.566 5.566 18 Si 0.743 3.257 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.016 3.984 23 C -0.088 4.088 24 C -0.190 4.190 25 C -0.186 4.186 26 H 0.114 0.886 27 H 0.136 0.864 28 H 0.117 0.883 29 H 0.214 0.786 30 H 0.236 0.764 31 H 0.042 0.958 32 H 0.130 0.870 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.658 5.170 12.125 13.447 hybrid contribution 0.765 -1.112 -1.011 1.686 sum -1.893 4.059 11.114 11.982 Atomic orbital electron populations 1.22542 0.71561 1.06582 1.05670 1.47575 1.09799 1.03497 1.44483 1.78214 0.96765 1.11692 1.18340 1.74852 1.09152 1.12652 1.17188 1.23881 0.96872 0.91840 1.03449 1.22104 0.91413 0.91164 1.14545 1.16560 0.85931 0.82337 0.77302 1.90766 1.16703 1.83500 1.50906 1.45482 1.10628 1.06025 1.70858 1.22660 0.97218 0.77783 1.00457 0.89041 1.22352 0.85588 1.00170 0.89899 1.44484 1.06276 1.80870 1.01061 1.19075 0.93709 1.39859 0.82532 0.90415 1.24780 0.95909 1.01927 0.97854 1.69790 1.06874 1.53184 1.26794 0.86044 0.78430 0.77247 0.84026 1.20513 1.21771 1.21819 1.21431 0.93355 0.97779 0.85864 1.21850 0.96386 0.95513 0.95008 1.21733 1.00424 1.00081 0.96767 1.21689 0.99938 0.95298 1.01679 0.88618 0.86439 0.88349 0.78595 0.76418 0.95813 0.86953 0.93758 0.95911 0.95689 0.92752 0.92513 0.92901 0.91679 0.92569 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.99 59.85 0.66 1.48 16 2 N -0.26 -3.74 3.79 -64.11 -0.24 -3.98 16 3 N -0.07 -1.09 13.14 60.35 0.79 -0.30 16 4 N -0.28 -4.47 12.35 30.47 0.38 -4.09 16 5 C 0.00 0.00 11.54 -17.35 -0.20 -0.20 16 6 C -0.06 -0.89 6.98 -82.33 -0.57 -1.47 16 7 C 0.60 10.03 7.79 -12.60 -0.10 9.93 16 8 O -0.54 -10.23 14.50 5.26 0.08 -10.15 16 9 N -0.68 -10.90 4.60 -52.86 -0.24 -11.14 16 10 C 0.12 2.17 2.65 -65.78 -0.17 1.99 16 11 H 0.09 1.61 7.47 -51.93 -0.39 1.23 16 12 C 0.15 3.34 5.28 -2.47 -0.01 3.33 16 13 N -0.60 -14.15 3.40 -169.99 -0.58 -14.73 16 14 C -0.22 -5.93 10.27 -15.06 -0.15 -6.08 16 15 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 16 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 17 N -0.92 -26.31 10.09 55.49 0.56 -25.75 16 18 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 C 0.14 2.63 6.41 -3.06 -0.02 2.61 16 23 C -0.09 -1.30 0.80 -152.68 -0.12 -1.43 16 24 C -0.13 -1.57 8.07 37.16 0.30 -1.27 16 25 C -0.13 -1.77 8.41 37.16 0.31 -1.46 16 26 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.12 1.31 6.35 -51.93 -0.33 0.98 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.20 2.26 7.60 -52.49 -0.40 1.86 16 30 H 0.40 5.67 6.11 -40.82 -0.25 5.42 16 31 H 0.02 0.59 7.80 -51.93 -0.41 0.19 16 32 H 0.11 3.04 5.88 -51.93 -0.31 2.73 16 33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.02 0.41 7.77 -51.93 -0.40 0.01 16 35 H 0.03 0.48 7.85 -51.93 -0.41 0.07 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.59 6.42 -51.93 -0.33 0.26 16 39 H 0.06 1.03 7.57 -51.93 -0.39 0.64 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -32.08 333.22 -5.14 -37.22 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.70 Total: 4.01 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -0.18 Total: 7.10 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.67 Total: -60.00 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.08 -5.14 -37.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974543498.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.145 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds