Wall clock time and date at job start Tue Mar 31 2020 03:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.28715 * 126.03296 * 2 1 4 4 N 1.28517 * 110.63332 * 179.97438 * 3 2 1 5 5 C 1.33320 * 109.44085 * 0.02562 * 4 3 2 6 6 C 1.37004 * 106.36975 * 359.97438 * 5 4 3 7 7 C 1.47244 * 127.18541 * 180.02562 * 6 5 4 8 8 O 1.21616 * 119.99642 * 185.58298 * 7 6 5 9 9 N 1.34772 * 120.00097 * 5.57601 * 7 6 5 10 10 C 1.46497 * 120.00207 * 185.15288 * 9 7 6 11 11 H 1.09001 * 110.88836 * 325.70709 * 10 9 7 12 12 C 1.54914 * 111.00154 * 89.58609 * 10 9 7 13 13 N 1.47523 * 104.78536 * 81.09122 * 12 10 9 14 14 C 1.36938 * 125.63954 * 204.08682 * 13 12 10 15 15 H 1.07996 * 120.00267 * 180.02562 * 14 13 12 16 16 C 1.38811 * 119.99380 * 0.03621 * 14 13 12 17 17 N 1.31620 * 120.00397 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99675 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47353 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46984 * 119.99699 * 18 16 14 21 21 H 1.48499 * 109.47528 * 239.99886 * 18 16 14 22 22 C 1.47026 * 108.71266 * 24.11658 * 13 12 10 23 23 C 1.54322 * 107.27347 * 358.94405 * 22 13 12 24 24 C 1.52997 * 110.71920 * 219.44356 * 23 22 13 25 25 C 1.53004 * 110.71710 * 96.16949 * 23 22 13 26 26 H 1.09001 * 109.46399 * 85.83509 * 1 2 3 27 27 H 1.08999 * 109.46909 * 205.83367 * 1 2 3 28 28 H 1.08996 * 109.47284 * 325.83368 * 1 2 3 29 29 H 1.07999 * 126.81356 * 179.74113 * 5 4 3 30 30 H 0.97008 * 120.00128 * 5.15509 * 9 7 6 31 31 H 1.09004 * 110.36201 * 199.90473 * 12 10 9 32 32 H 1.08996 * 110.36401 * 322.22575 * 12 10 9 33 33 H 0.96999 * 119.99750 * 180.02562 * 17 16 14 34 34 H 1.09005 * 109.88061 * 239.52330 * 22 13 12 35 35 H 1.09005 * 110.00687 * 118.43783 * 22 13 12 36 36 H 1.08995 * 109.47136 * 173.52467 * 24 23 22 37 37 H 1.09001 * 109.47150 * 293.52372 * 24 23 22 38 38 H 1.08997 * 109.47647 * 53.52347 * 24 23 22 39 39 H 1.08998 * 109.46876 * 306.47797 * 25 23 22 40 40 H 1.09002 * 109.46917 * 66.47677 * 25 23 22 41 41 H 1.09000 * 109.46837 * 186.47894 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4613 0.6996 0.0005 5 6 3.5552 -0.6303 0.0004 6 6 2.2712 -1.1081 0.0003 7 6 1.8463 -2.5179 0.0006 8 8 0.6671 -2.7975 -0.1020 9 7 2.7640 -3.4983 0.1144 10 6 2.3555 -4.9006 0.0016 11 1 1.3595 -5.0501 0.4184 12 6 2.4195 -5.3808 -1.4698 13 7 3.8409 -5.7019 -1.6997 14 6 4.4691 -5.7160 -2.9164 15 1 5.5179 -5.9654 -2.9797 16 6 3.7577 -5.4094 -4.0682 17 7 2.4796 -5.1046 -3.9909 18 14 4.6144 -5.4293 -5.7281 19 1 6.0405 -5.8009 -5.5447 20 1 3.9547 -6.4222 -6.6137 21 1 4.5290 -4.0815 -6.3455 22 6 4.4711 -6.0048 -0.4063 23 6 3.3891 -5.8373 0.6811 24 6 3.9757 -5.1795 1.9317 25 6 2.7535 -7.1861 1.0246 26 1 -0.3632 0.0746 -1.0250 27 1 -0.3633 -0.9250 0.4478 28 1 -0.3633 0.8503 0.5771 29 1 4.4633 -1.2149 -0.0032 30 1 3.6950 -3.2754 0.2711 31 1 1.8030 -6.2695 -1.6059 32 1 2.0955 -4.5867 -2.1424 33 1 1.9825 -4.8908 -4.7960 34 1 5.2919 -5.3115 -0.2225 35 1 4.8438 -7.0291 -0.4039 36 1 3.1749 -4.9664 2.6397 37 1 4.6979 -5.8537 2.3921 38 1 4.4723 -4.2497 1.6542 39 1 2.3944 -7.6614 0.1118 40 1 3.4960 -7.8270 1.5000 41 1 1.9175 -7.0306 1.7065 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974543498.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:43 Heat of formation + Delta-G solvation = 70.142626 kcal Electronic energy + Delta-G solvation = -24656.246291 eV Core-core repulsion = 21187.572872 eV Total energy + Delta-G solvation = -3468.673419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.38108 -41.17386 -39.39409 -35.93757 -35.53296 -34.63729 -32.58028 -32.49132 -29.80420 -29.01025 -28.01189 -27.38321 -25.66374 -24.53034 -23.41105 -22.14039 -21.47407 -20.24125 -18.99603 -18.68422 -17.89664 -17.76787 -17.35652 -16.58776 -16.08643 -15.71015 -15.44454 -15.25293 -15.18395 -14.60991 -14.27775 -14.17275 -13.90631 -13.70307 -13.65110 -13.23542 -13.01315 -12.98261 -12.86831 -12.62188 -12.54441 -12.24751 -12.06213 -11.77138 -11.74731 -11.44652 -11.33645 -11.28968 -11.20028 -10.75949 -10.64382 -10.01829 -8.81756 -7.74838 -5.17987 -0.16201 1.07146 1.17766 1.45426 1.46388 1.55789 1.94893 2.16406 2.49717 3.27135 3.36124 3.43741 3.58850 3.71975 3.72567 3.98330 4.00941 4.10447 4.20941 4.43942 4.50835 4.53346 4.61697 4.76044 4.87209 4.89918 4.92605 4.98116 5.06200 5.14616 5.24126 5.29613 5.31060 5.38209 5.51691 5.56814 5.65217 5.83881 6.32967 6.40480 7.01923 7.12242 7.20756 7.81908 8.44437 9.25771 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.006103 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.820181 B = 4586.646373 C = 5815.767185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.252 5.252 3 N -0.077 5.077 4 N -0.298 5.298 5 C 0.010 3.990 6 C -0.075 4.075 7 C 0.597 3.403 8 O -0.566 6.566 9 N -0.673 5.673 10 C 0.138 3.862 11 H 0.092 0.908 12 C 0.152 3.848 13 N -0.617 5.617 14 C -0.225 4.225 15 H 0.084 0.916 16 C -0.067 4.067 17 N -0.947 5.947 18 Si 0.970 3.030 19 H -0.263 1.263 20 H -0.297 1.297 21 H -0.299 1.299 22 C 0.136 3.864 23 C -0.072 4.072 24 C -0.127 4.127 25 C -0.127 4.127 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.131 0.869 29 H 0.224 0.776 30 H 0.411 0.589 31 H -0.009 1.009 32 H 0.070 0.930 33 H 0.241 0.759 34 H 0.038 0.962 35 H 0.026 0.974 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.034 0.966 40 H 0.078 0.922 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.403 4.014 14.441 14.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.049 5.049 3 N -0.057 5.057 4 N -0.160 5.160 5 C -0.151 4.151 6 C -0.209 4.209 7 C 0.381 3.619 8 O -0.446 6.446 9 N -0.323 5.323 10 C 0.033 3.967 11 H 0.110 0.890 12 C 0.026 3.974 13 N -0.343 5.343 14 C -0.354 4.354 15 H 0.102 0.898 16 C -0.260 4.260 17 N -0.597 5.597 18 Si 0.800 3.200 19 H -0.187 1.187 20 H -0.225 1.225 21 H -0.226 1.226 22 C 0.011 3.989 23 C -0.073 4.073 24 C -0.184 4.184 25 C -0.184 4.184 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.149 0.851 29 H 0.241 0.759 30 H 0.249 0.751 31 H 0.009 0.991 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.241 5.370 14.157 15.192 hybrid contribution 0.316 -1.201 -1.622 2.043 sum -0.925 4.170 12.535 13.243 Atomic orbital electron populations 1.22838 0.69703 1.07801 1.06682 1.47898 1.10924 1.02955 1.43161 1.78167 0.96969 1.12031 1.18570 1.74842 1.09471 1.13432 1.18239 1.24350 0.97517 0.91471 1.01782 1.21994 0.92089 0.90689 1.16176 1.16734 0.85625 0.82985 0.76549 1.90753 1.17818 1.84014 1.51977 1.45341 1.11165 1.05256 1.70518 1.22319 0.98500 0.79026 0.96898 0.89016 1.22010 0.85059 0.97508 0.92821 1.44699 1.06671 1.80809 1.02109 1.19444 0.94048 1.38025 0.83864 0.89805 1.25519 0.96552 1.02906 1.00988 1.70078 1.08156 1.54898 1.26613 0.85113 0.78268 0.76363 0.80253 1.18746 1.22486 1.22622 1.21681 0.94647 0.97931 0.84642 1.21825 0.94356 0.95765 0.95347 1.21718 1.01249 1.00540 0.94943 1.21697 1.01224 0.94638 1.00881 0.87983 0.86943 0.85102 0.75940 0.75121 0.99101 0.91186 0.94903 0.94361 0.95647 0.91414 0.90435 0.92085 0.94662 0.90295 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.39 10.99 127.77 1.40 2.79 16 2 N -0.25 -7.05 3.79 -356.75 -1.35 -8.40 16 3 N -0.08 -2.32 13.14 37.02 0.49 -1.84 16 4 N -0.30 -9.26 12.35 -57.50 -0.71 -9.97 16 5 C 0.01 0.27 11.54 84.18 0.97 1.24 16 6 C -0.07 -2.24 6.98 40.41 0.28 -1.95 16 7 C 0.60 19.74 7.79 86.61 0.67 20.41 16 8 O -0.57 -21.49 14.50 -4.08 -0.06 -21.55 16 9 N -0.67 -20.71 4.60 -439.40 -2.02 -22.74 16 10 C 0.14 4.75 2.65 46.38 0.12 4.88 16 11 H 0.09 3.19 7.47 -2.39 -0.02 3.17 16 12 C 0.15 7.20 5.28 86.84 0.46 7.66 16 13 N -0.62 -29.14 3.40 -691.71 -2.35 -31.49 16 14 C -0.22 -11.94 10.27 84.03 0.86 -11.08 16 15 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 16 C -0.07 -3.74 5.49 84.86 0.47 -3.28 16 17 N -0.95 -56.43 10.09 21.65 0.22 -56.21 16 18 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 21 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 22 C 0.14 4.80 6.41 86.73 0.56 5.35 16 23 C -0.07 -2.00 0.80 -50.99 -0.04 -2.04 16 24 C -0.13 -2.47 8.07 71.98 0.58 -1.89 16 25 C -0.13 -3.22 8.41 71.98 0.61 -2.62 16 26 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.11 2.43 6.35 -2.39 -0.02 2.42 16 28 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.22 4.56 7.60 -2.91 -0.02 4.54 16 30 H 0.41 10.70 6.11 -92.70 -0.57 10.14 16 31 H -0.01 -0.46 7.80 -2.39 -0.02 -0.48 16 32 H 0.07 3.96 5.88 -2.39 -0.01 3.94 16 33 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.04 1.26 7.77 -2.38 -0.02 1.24 16 35 H 0.03 0.91 7.85 -2.38 -0.02 0.89 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.10 6.42 -2.39 -0.02 1.09 16 39 H 0.03 1.10 7.57 -2.39 -0.02 1.08 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -71.63 333.22 3.67 -67.96 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.49 Total: 17.19 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 6.94 Total: 19.48 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -5.73 Total: -130.64 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.06 Total: -21.55 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -71.63 3.67 -67.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974543498.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.100 kcal (2) G-P(sol) polarization free energy of solvation -71.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds