Wall clock time and date at job start Tue Mar 31 2020 03:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28716 * 126.03421 * 2 1 4 4 N 1.28506 * 110.63792 * 180.02562 * 3 2 1 5 5 C 1.33321 * 109.44402 * 359.97438 * 4 3 2 6 6 C 1.37006 * 106.36617 * 0.23578 * 5 4 3 7 7 C 1.47242 * 127.18763 * 179.75402 * 6 5 4 8 8 O 1.21616 * 120.00084 * 185.59282 * 7 6 5 9 9 N 1.34775 * 120.00008 * 5.59222 * 7 6 5 10 10 C 1.46499 * 120.00138 * 185.12909 * 9 7 6 11 11 H 1.09001 * 110.88196 * 37.42316 * 10 9 7 12 12 C 1.54912 * 111.00412 * 273.54998 * 10 9 7 13 13 N 1.47424 * 104.82855 * 278.93247 * 12 10 9 14 14 C 1.36946 * 125.64934 * 155.83802 * 13 12 10 15 15 H 1.07999 * 119.99802 * 180.02562 * 14 13 12 16 16 C 1.38811 * 119.99591 * 0.02562 * 14 13 12 17 17 N 1.31614 * 120.00348 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99844 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47241 * 90.00194 * 18 16 14 20 20 H 1.48497 * 109.47401 * 210.00506 * 18 16 14 21 21 H 1.48503 * 109.47415 * 330.00347 * 18 16 14 22 22 C 1.47025 * 108.70586 * 335.87351 * 13 12 10 23 23 C 1.54320 * 107.26665 * 1.06020 * 22 13 12 24 24 C 1.53007 * 110.71719 * 263.82908 * 23 22 13 25 25 C 1.52999 * 110.71798 * 140.56198 * 23 22 13 26 26 H 1.09000 * 109.47191 * 85.84400 * 1 2 3 27 27 H 1.09001 * 109.46560 * 205.84238 * 1 2 3 28 28 H 1.08998 * 109.47267 * 325.84542 * 1 2 3 29 29 H 1.07995 * 126.82022 * 179.97438 * 5 4 3 30 30 H 0.97004 * 119.99596 * 5.13270 * 9 7 6 31 31 H 1.08995 * 110.36826 * 37.76800 * 12 10 9 32 32 H 1.08993 * 110.36889 * 160.09893 * 12 10 9 33 33 H 0.96996 * 120.00387 * 179.97438 * 17 16 14 34 34 H 1.09002 * 109.88210 * 120.48073 * 22 13 12 35 35 H 1.09002 * 109.87841 * 241.64317 * 22 13 12 36 36 H 1.09003 * 109.46940 * 173.53242 * 24 23 22 37 37 H 1.09005 * 109.46953 * 293.52337 * 24 23 22 38 38 H 1.08991 * 109.47256 * 53.52718 * 24 23 22 39 39 H 1.09002 * 109.47103 * 306.46951 * 25 23 22 40 40 H 1.09000 * 109.47462 * 66.47175 * 25 23 22 41 41 H 1.09003 * 109.47182 * 186.47564 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4612 0.6997 -0.0005 5 6 3.5553 -0.6302 -0.0004 6 6 2.2713 -1.1081 -0.0051 7 6 1.8464 -2.5178 -0.0118 8 8 0.6675 -2.7971 -0.1181 9 7 2.7639 -3.4987 0.0998 10 6 2.3557 -4.9006 -0.0195 11 1 1.5805 -5.0164 -0.7770 12 6 1.8852 -5.4601 1.3463 13 7 3.1276 -5.8080 2.0596 14 6 3.2705 -5.8930 3.4190 15 1 4.2269 -6.1561 3.8460 16 6 2.1859 -5.6409 4.2478 17 7 1.0202 -5.3207 3.7274 18 14 2.3805 -5.7574 6.1020 19 1 2.7837 -4.4340 6.6416 20 1 1.0895 -6.1677 6.7104 21 1 3.4231 -6.7634 6.4281 22 6 4.1881 -6.0479 1.0700 23 6 3.5743 -5.8105 -0.3258 24 6 3.1201 -7.1320 -0.9492 25 6 4.5696 -5.0930 -1.2399 26 1 -0.3633 0.0745 -1.0250 27 1 -0.3632 -0.9249 0.4480 28 1 -0.3634 0.8504 0.5769 29 1 4.4633 -1.2148 -0.0011 30 1 3.6945 -3.2764 0.2592 31 1 1.3317 -4.6999 1.8973 32 1 1.2700 -6.3480 1.2010 33 1 0.2623 -5.1449 4.3065 34 1 5.0130 -5.3547 1.2351 35 1 4.5433 -7.0754 1.1490 36 1 2.5883 -6.9311 -1.8793 37 1 3.9908 -7.7544 -1.1559 38 1 2.4580 -7.6517 -0.2569 39 1 4.9224 -4.1848 -0.7510 40 1 5.4161 -5.7493 -1.4417 41 1 4.0793 -4.8334 -2.1782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974543500.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:46 Heat of formation + Delta-G solvation = 93.499510 kcal Electronic energy + Delta-G solvation = -24658.252525 eV Core-core repulsion = 21190.591937 eV Total energy + Delta-G solvation = -3467.660588 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.23041 -39.76440 -37.94755 -34.73689 -33.90221 -33.23148 -31.31038 -30.74362 -28.30763 -27.94828 -26.89716 -25.67213 -24.23757 -23.14911 -22.16817 -20.64478 -19.97185 -18.93945 -17.76395 -16.82764 -16.73512 -16.51877 -15.90017 -14.87432 -14.59675 -14.28829 -14.16371 -13.82932 -13.77649 -13.33742 -13.23487 -13.00296 -12.79160 -12.26804 -12.06691 -11.98634 -11.81970 -11.38128 -11.24002 -11.11072 -11.08114 -10.81316 -10.49780 -10.28716 -10.19312 -10.06583 -9.90978 -9.76554 -9.74807 -9.44616 -8.74552 -8.53243 -6.86572 -5.67941 -3.10754 1.03224 2.14848 2.34687 3.27335 3.37135 3.39979 3.42622 3.44502 4.36563 4.45016 4.59890 4.79918 4.87466 5.01993 5.04758 5.15292 5.20821 5.38760 5.47438 5.54665 5.64522 5.69072 5.80983 5.94176 5.95308 6.02342 6.09218 6.17460 6.29770 6.39541 6.42968 6.51339 6.57659 6.64500 6.86502 7.38678 7.57402 7.69774 7.85824 8.31047 8.33663 8.40377 9.17407 9.79038 10.42128 11.34841 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.006034 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.088549 B = 4639.566736 C = 5850.785970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.256 5.256 3 N -0.069 5.069 4 N -0.276 5.276 5 C -0.004 4.004 6 C -0.056 4.056 7 C 0.592 3.408 8 O -0.535 6.535 9 N -0.681 5.681 10 C 0.126 3.874 11 H 0.088 0.912 12 C 0.146 3.854 13 N -0.601 5.601 14 C -0.224 4.224 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.917 5.917 18 Si 0.912 3.088 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.142 3.858 23 C -0.086 4.086 24 C -0.128 4.128 25 C -0.133 4.133 26 H 0.094 0.906 27 H 0.120 0.880 28 H 0.099 0.901 29 H 0.196 0.804 30 H 0.400 0.600 31 H 0.115 0.885 32 H 0.023 0.977 33 H 0.252 0.748 34 H 0.023 0.977 35 H 0.025 0.975 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.570 4.467 -11.331 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.052 5.052 3 N -0.050 5.050 4 N -0.139 5.139 5 C -0.165 4.165 6 C -0.191 4.191 7 C 0.376 3.624 8 O -0.412 6.412 9 N -0.331 5.331 10 C 0.021 3.979 11 H 0.106 0.894 12 C 0.020 3.980 13 N -0.327 5.327 14 C -0.353 4.353 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.566 5.566 18 Si 0.742 3.258 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.016 3.984 23 C -0.088 4.088 24 C -0.186 4.186 25 C -0.191 4.191 26 H 0.112 0.888 27 H 0.138 0.862 28 H 0.118 0.882 29 H 0.213 0.787 30 H 0.235 0.765 31 H 0.133 0.867 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.589 5.801 -11.213 12.725 hybrid contribution 0.402 -1.152 1.163 1.686 sum 1.991 4.649 -10.050 11.251 Atomic orbital electron populations 1.22570 0.71434 1.07129 1.05316 1.47587 1.09871 1.03464 1.44271 1.78215 0.96717 1.11708 1.18370 1.74840 1.09243 1.12615 1.17190 1.23834 0.96763 0.91901 1.03979 1.22139 0.91392 0.91248 1.14280 1.16572 0.85959 0.82291 0.77625 1.90789 1.16393 1.83405 1.50621 1.45496 1.10761 1.05964 1.70923 1.22625 0.95921 0.78014 1.01364 0.89396 1.22321 0.88924 0.99293 0.87429 1.44459 1.05752 1.81298 1.01187 1.19027 0.96046 1.40198 0.80003 0.90510 1.24781 0.95608 1.01970 0.98104 1.69784 1.00561 1.53438 1.32773 0.86119 0.76844 0.77658 0.85135 1.21691 1.21674 1.20721 1.21434 0.92029 0.97865 0.87103 1.21851 0.95250 0.95543 0.96112 1.21689 1.01212 0.95618 1.00081 1.21746 0.98613 0.99851 0.98867 0.88796 0.86150 0.88226 0.78721 0.76456 0.86743 0.95938 0.93714 0.95927 0.95688 0.93015 0.92549 0.91668 0.92915 0.92452 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.98 59.85 0.66 1.50 16 2 N -0.26 -3.73 3.79 -64.11 -0.24 -3.97 16 3 N -0.07 -1.08 13.14 60.35 0.79 -0.29 16 4 N -0.28 -4.35 12.35 30.47 0.38 -3.98 16 5 C 0.00 -0.06 11.54 -17.35 -0.20 -0.26 16 6 C -0.06 -0.85 6.98 -82.33 -0.57 -1.43 16 7 C 0.59 10.03 7.79 -12.60 -0.10 9.93 16 8 O -0.53 -10.34 14.65 5.26 0.08 -10.26 16 9 N -0.68 -10.93 4.67 -52.86 -0.25 -11.18 16 10 C 0.13 2.21 2.52 -65.79 -0.17 2.04 16 11 H 0.09 1.54 7.71 -51.93 -0.40 1.14 16 12 C 0.15 3.37 5.27 -2.53 -0.01 3.36 16 13 N -0.60 -14.28 3.39 -170.07 -0.58 -14.86 16 14 C -0.22 -6.00 10.27 -15.06 -0.15 -6.16 16 15 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 16 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 17 N -0.92 -26.39 10.09 55.49 0.56 -25.83 16 18 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.14 2.65 6.41 -3.06 -0.02 2.63 16 23 C -0.09 -1.30 0.81 -152.68 -0.12 -1.42 16 24 C -0.13 -1.77 8.41 37.16 0.31 -1.45 16 25 C -0.13 -1.55 8.07 37.16 0.30 -1.25 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.12 1.52 6.37 -51.93 -0.33 1.19 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.20 2.00 7.60 -52.49 -0.40 1.60 16 30 H 0.40 5.64 5.97 -40.82 -0.24 5.39 16 31 H 0.12 3.11 5.87 -51.93 -0.31 2.81 16 32 H 0.02 0.57 7.80 -51.93 -0.41 0.16 16 33 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.02 0.41 7.77 -51.93 -0.40 0.01 16 35 H 0.03 0.48 7.84 -51.93 -0.41 0.07 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.03 7.57 -51.93 -0.39 0.64 16 39 H 0.05 0.57 6.35 -51.93 -0.33 0.24 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 333.33 15.07 5.02 5.02 Total: -1.00 -32.32 333.33 -5.14 -37.46 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.70 Total: 3.89 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -0.18 Total: 7.15 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.66 Total: -60.11 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.32 -5.14 -37.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974543500.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.958 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds