Wall clock time and date at job start Tue Mar 31 2020 03:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28716 * 126.03421 * 2 1 4 4 N 1.28506 * 110.63792 * 180.02562 * 3 2 1 5 5 C 1.33321 * 109.44402 * 359.97438 * 4 3 2 6 6 C 1.37006 * 106.36617 * 0.23578 * 5 4 3 7 7 C 1.47242 * 127.18763 * 179.75402 * 6 5 4 8 8 O 1.21616 * 120.00084 * 185.59282 * 7 6 5 9 9 N 1.34775 * 120.00008 * 5.59222 * 7 6 5 10 10 C 1.46499 * 120.00138 * 185.12909 * 9 7 6 11 11 H 1.09001 * 110.88196 * 37.42316 * 10 9 7 12 12 C 1.54912 * 111.00412 * 273.54998 * 10 9 7 13 13 N 1.47424 * 104.82855 * 278.93247 * 12 10 9 14 14 C 1.36946 * 125.64934 * 155.83802 * 13 12 10 15 15 H 1.07999 * 119.99802 * 180.02562 * 14 13 12 16 16 C 1.38811 * 119.99591 * 0.02562 * 14 13 12 17 17 N 1.31614 * 120.00348 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99844 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47241 * 90.00194 * 18 16 14 20 20 H 1.48497 * 109.47401 * 210.00506 * 18 16 14 21 21 H 1.48503 * 109.47415 * 330.00347 * 18 16 14 22 22 C 1.47025 * 108.70586 * 335.87351 * 13 12 10 23 23 C 1.54320 * 107.26665 * 1.06020 * 22 13 12 24 24 C 1.53007 * 110.71719 * 263.82908 * 23 22 13 25 25 C 1.52999 * 110.71798 * 140.56198 * 23 22 13 26 26 H 1.09000 * 109.47191 * 85.84400 * 1 2 3 27 27 H 1.09001 * 109.46560 * 205.84238 * 1 2 3 28 28 H 1.08998 * 109.47267 * 325.84542 * 1 2 3 29 29 H 1.07995 * 126.82022 * 179.97438 * 5 4 3 30 30 H 0.97004 * 119.99596 * 5.13270 * 9 7 6 31 31 H 1.08995 * 110.36826 * 37.76800 * 12 10 9 32 32 H 1.08993 * 110.36889 * 160.09893 * 12 10 9 33 33 H 0.96996 * 120.00387 * 179.97438 * 17 16 14 34 34 H 1.09002 * 109.88210 * 120.48073 * 22 13 12 35 35 H 1.09002 * 109.87841 * 241.64317 * 22 13 12 36 36 H 1.09003 * 109.46940 * 173.53242 * 24 23 22 37 37 H 1.09005 * 109.46953 * 293.52337 * 24 23 22 38 38 H 1.08991 * 109.47256 * 53.52718 * 24 23 22 39 39 H 1.09002 * 109.47103 * 306.46951 * 25 23 22 40 40 H 1.09000 * 109.47462 * 66.47175 * 25 23 22 41 41 H 1.09003 * 109.47182 * 186.47564 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4612 0.6997 -0.0005 5 6 3.5553 -0.6302 -0.0004 6 6 2.2713 -1.1081 -0.0051 7 6 1.8464 -2.5178 -0.0118 8 8 0.6675 -2.7971 -0.1181 9 7 2.7639 -3.4987 0.0998 10 6 2.3557 -4.9006 -0.0195 11 1 1.5805 -5.0164 -0.7770 12 6 1.8852 -5.4601 1.3463 13 7 3.1276 -5.8080 2.0596 14 6 3.2705 -5.8930 3.4190 15 1 4.2269 -6.1561 3.8460 16 6 2.1859 -5.6409 4.2478 17 7 1.0202 -5.3207 3.7274 18 14 2.3805 -5.7574 6.1020 19 1 2.7837 -4.4340 6.6416 20 1 1.0895 -6.1677 6.7104 21 1 3.4231 -6.7634 6.4281 22 6 4.1881 -6.0479 1.0700 23 6 3.5743 -5.8105 -0.3258 24 6 3.1201 -7.1320 -0.9492 25 6 4.5696 -5.0930 -1.2399 26 1 -0.3633 0.0745 -1.0250 27 1 -0.3632 -0.9249 0.4480 28 1 -0.3634 0.8504 0.5769 29 1 4.4633 -1.2148 -0.0011 30 1 3.6945 -3.2764 0.2592 31 1 1.3317 -4.6999 1.8973 32 1 1.2700 -6.3480 1.2010 33 1 0.2623 -5.1449 4.3065 34 1 5.0130 -5.3547 1.2351 35 1 4.5433 -7.0754 1.1490 36 1 2.5883 -6.9311 -1.8793 37 1 3.9908 -7.7544 -1.1559 38 1 2.4580 -7.6517 -0.2569 39 1 4.9224 -4.1848 -0.7510 40 1 5.4161 -5.7493 -1.4417 41 1 4.0793 -4.8334 -2.1782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974543500.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:46 Heat of formation + Delta-G solvation = 70.281613 kcal Electronic energy + Delta-G solvation = -24659.259329 eV Core-core repulsion = 21190.591937 eV Total energy + Delta-G solvation = -3468.667392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.37540 -41.17032 -39.38060 -35.94110 -35.53677 -34.62284 -32.58967 -32.48473 -29.79426 -29.01366 -28.00842 -27.38465 -25.64856 -24.53291 -23.40179 -22.16722 -21.45513 -20.23869 -18.98409 -18.68787 -17.86954 -17.75322 -17.35183 -16.62880 -15.90599 -15.79755 -15.56687 -15.26586 -15.12425 -14.60691 -14.26299 -14.15225 -13.89281 -13.71655 -13.64815 -13.22169 -13.01143 -12.97418 -12.86899 -12.60134 -12.53060 -12.24994 -12.12852 -11.76911 -11.73883 -11.44181 -11.33805 -11.28721 -11.16403 -10.74709 -10.63439 -10.02090 -8.81879 -7.74570 -5.18284 -0.14702 1.06785 1.19416 1.45113 1.45502 1.54219 1.99392 2.14162 2.49264 3.28473 3.35469 3.43884 3.58622 3.71780 3.72713 3.98773 4.01671 4.10897 4.20647 4.44003 4.50165 4.53991 4.62437 4.75659 4.87726 4.90613 4.93706 4.98296 5.07102 5.15295 5.24615 5.30183 5.31177 5.39203 5.50923 5.57461 5.66031 5.85824 6.34689 6.41830 7.04424 7.12244 7.21811 7.82052 8.44478 9.25516 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.006034 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.088549 B = 4639.566736 C = 5850.785970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.253 5.253 3 N -0.078 5.078 4 N -0.297 5.297 5 C 0.012 3.988 6 C -0.075 4.075 7 C 0.593 3.407 8 O -0.565 6.565 9 N -0.673 5.673 10 C 0.140 3.860 11 H 0.090 0.910 12 C 0.152 3.848 13 N -0.618 5.618 14 C -0.228 4.228 15 H 0.083 0.917 16 C -0.068 4.068 17 N -0.946 5.946 18 Si 0.971 3.029 19 H -0.290 1.290 20 H -0.299 1.299 21 H -0.268 1.268 22 C 0.135 3.865 23 C -0.071 4.071 24 C -0.127 4.127 25 C -0.128 4.128 26 H 0.117 0.883 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.231 0.769 30 H 0.411 0.589 31 H 0.072 0.928 32 H -0.011 1.011 33 H 0.242 0.758 34 H 0.038 0.962 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.033 0.967 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.769 4.829 -12.742 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.050 5.050 3 N -0.058 5.058 4 N -0.159 5.159 5 C -0.149 4.149 6 C -0.210 4.210 7 C 0.378 3.622 8 O -0.444 6.444 9 N -0.324 5.324 10 C 0.034 3.966 11 H 0.108 0.892 12 C 0.026 3.974 13 N -0.344 5.344 14 C -0.357 4.357 15 H 0.101 0.899 16 C -0.260 4.260 17 N -0.596 5.596 18 Si 0.801 3.199 19 H -0.217 1.217 20 H -0.226 1.226 21 H -0.193 1.193 22 C 0.011 3.989 23 C -0.073 4.073 24 C -0.184 4.184 25 C -0.186 4.186 26 H 0.135 0.865 27 H 0.120 0.880 28 H 0.142 0.858 29 H 0.247 0.753 30 H 0.249 0.751 31 H 0.090 0.910 32 H 0.007 0.993 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.845 6.170 -12.646 14.587 hybrid contribution -0.291 -1.294 1.600 2.078 sum 3.553 4.877 -11.046 12.586 Atomic orbital electron populations 1.22802 0.69906 1.07170 1.07101 1.47888 1.10875 1.03097 1.43173 1.78180 0.97019 1.11985 1.18657 1.74836 1.09377 1.13518 1.18187 1.24409 0.97400 0.91407 1.01708 1.22010 0.92221 0.90548 1.16237 1.16790 0.85553 0.83082 0.76803 1.90778 1.17716 1.84010 1.51925 1.45354 1.11254 1.05150 1.70625 1.22295 0.97414 0.79111 0.97759 0.89250 1.21977 0.88497 0.96859 0.90054 1.44684 1.07248 1.81214 1.01240 1.19410 0.96018 1.38542 0.81776 0.89914 1.25542 0.95613 1.02888 1.01959 1.70082 1.01009 1.55113 1.33423 0.85172 0.76474 0.77637 0.80640 1.21724 1.22625 1.19285 1.21693 0.91254 0.98046 0.87950 1.21829 0.94526 0.95879 0.95027 1.21698 1.01790 0.94921 1.00039 1.21740 0.98159 1.00189 0.98474 0.86510 0.88038 0.85829 0.75292 0.75076 0.91042 0.99342 0.94863 0.94440 0.95699 0.90963 0.90265 0.94774 0.91918 0.90402 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.49 10.98 127.77 1.40 2.89 16 2 N -0.25 -7.12 3.79 -356.75 -1.35 -8.47 16 3 N -0.08 -2.32 13.14 37.02 0.49 -1.84 16 4 N -0.30 -8.85 12.35 -57.50 -0.71 -9.56 16 5 C 0.01 0.30 11.54 84.18 0.97 1.27 16 6 C -0.08 -2.21 6.98 40.41 0.28 -1.93 16 7 C 0.59 19.80 7.79 86.61 0.67 20.47 16 8 O -0.57 -22.23 14.65 -4.08 -0.06 -22.29 16 9 N -0.67 -20.72 4.67 -439.42 -2.05 -22.78 16 10 C 0.14 4.83 2.52 46.38 0.12 4.94 16 11 H 0.09 3.09 7.71 -2.39 -0.02 3.07 16 12 C 0.15 7.29 5.27 86.86 0.46 7.75 16 13 N -0.62 -29.59 3.39 -691.99 -2.35 -31.94 16 14 C -0.23 -12.29 10.27 84.03 0.86 -11.42 16 15 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 16 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 17 N -0.95 -56.80 10.09 21.65 0.22 -56.58 16 18 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 20 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 C 0.14 4.83 6.41 86.73 0.56 5.39 16 23 C -0.07 -1.98 0.81 -51.00 -0.04 -2.02 16 24 C -0.13 -3.22 8.41 71.98 0.61 -2.61 16 25 C -0.13 -2.41 8.07 71.98 0.58 -1.82 16 26 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.10 2.62 6.37 -2.39 -0.02 2.61 16 28 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.23 3.86 7.60 -2.91 -0.02 3.84 16 30 H 0.41 10.55 5.97 -92.71 -0.55 9.99 16 31 H 0.07 4.09 5.87 -2.39 -0.01 4.07 16 32 H -0.01 -0.60 7.80 -2.39 -0.02 -0.62 16 33 H 0.24 14.37 8.31 -92.71 -0.77 13.59 16 34 H 0.04 1.25 7.77 -2.39 -0.02 1.23 16 35 H 0.02 0.90 7.84 -2.39 -0.02 0.89 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.03 1.07 7.57 -2.39 -0.02 1.05 16 39 H 0.06 1.07 6.35 -2.39 -0.02 1.05 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -73.04 333.33 3.64 -69.39 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.50 Total: 16.74 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: 6.94 Total: 19.56 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -5.76 Total: -131.16 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.06 Total: -22.29 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -73.04 3.64 -69.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974543500.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.676 kcal (2) G-P(sol) polarization free energy of solvation -73.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds