Wall clock time and date at job start Tue Mar 31 2020 03:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34817 * 126.59359 * 2 1 4 4 C 1.36597 * 106.83695 * 180.13357 * 3 2 1 5 5 C 1.47524 * 125.76638 * 179.89754 * 4 3 2 6 6 O 1.21594 * 120.00283 * 359.71132 * 5 4 3 7 7 N 1.34773 * 119.99652 * 179.71361 * 5 4 3 8 8 C 1.46500 * 120.00063 * 179.97438 * 7 5 4 9 9 H 1.09005 * 110.63957 * 328.14482 * 8 7 5 10 10 C 1.54327 * 110.71866 * 91.47566 * 8 7 5 11 11 N 1.47024 * 107.26774 * 96.17335 * 10 8 7 12 12 C 1.36941 * 125.64618 * 179.20447 * 11 10 8 13 13 H 1.08005 * 119.99780 * 179.68989 * 12 11 10 14 14 C 1.38813 * 119.99913 * 359.69358 * 12 11 10 15 15 N 1.31616 * 119.99926 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99719 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47311 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47271 * 120.00121 * 16 14 12 19 19 H 1.48501 * 109.46665 * 239.99715 * 16 14 12 20 20 C 1.47426 * 108.70449 * 358.94057 * 11 10 8 21 21 C 1.54912 * 104.83261 * 24.12870 * 20 11 10 22 22 C 1.53004 * 111.00325 * 81.06512 * 21 20 11 23 23 C 1.52996 * 111.00332 * 204.91674 * 21 20 11 24 24 N 1.34405 * 108.45815 * 359.63019 * 4 3 2 25 25 N 1.28754 * 109.52394 * 0.22909 * 24 4 3 26 26 H 1.09007 * 109.46927 * 270.24585 * 1 2 3 27 27 H 1.08993 * 109.47520 * 30.24498 * 1 2 3 28 28 H 1.09001 * 109.47191 * 150.25266 * 1 2 3 29 29 H 1.08001 * 126.57682 * 359.97438 * 3 2 1 30 30 H 0.97005 * 120.00259 * 359.97438 * 7 5 4 31 31 H 1.08995 * 109.88184 * 336.75758 * 10 8 7 32 32 H 1.09002 * 109.88385 * 215.58765 * 10 8 7 33 33 H 0.97001 * 119.99407 * 180.02562 * 15 14 12 34 34 H 1.09002 * 110.36518 * 142.96440 * 20 11 10 35 35 H 1.08997 * 110.36787 * 265.28818 * 20 11 10 36 36 H 1.08994 * 109.46864 * 61.44984 * 22 21 20 37 37 H 1.09000 * 109.46578 * 181.45533 * 22 21 20 38 38 H 1.08996 * 109.46833 * 301.45173 * 22 21 20 39 39 H 1.09002 * 109.46921 * 58.54367 * 23 21 20 40 40 H 1.09003 * 109.47131 * 178.54888 * 23 21 20 41 41 H 1.09001 * 109.47089 * 298.54445 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6207 -0.0030 5 6 4.7704 1.4558 -0.0063 6 8 4.6755 2.6680 -0.0117 7 7 5.9866 0.8750 -0.0033 8 6 7.1943 1.7042 -0.0071 9 1 7.0207 2.6334 -0.5500 10 6 7.6652 1.9896 1.4346 11 7 8.7038 1.0006 1.7582 12 6 9.3897 0.9215 2.9409 13 1 10.1337 0.1516 3.0832 14 6 9.1284 1.8306 3.9569 15 7 8.2220 2.7689 3.7832 16 14 10.0645 1.7230 5.5698 17 1 11.0214 0.5888 5.5122 18 1 10.8087 2.9881 5.7956 19 1 9.1071 1.5063 6.6841 20 6 8.8802 0.1043 0.6011 21 6 8.3914 0.9278 -0.6165 22 6 9.4790 1.8889 -1.1008 23 6 7.9297 0.0096 -1.7499 24 7 3.5239 -0.7230 0.0034 25 7 2.3009 -1.1257 0.0054 26 1 -0.3633 0.0044 1.0277 27 1 -0.3634 0.8877 -0.5176 28 1 -0.3633 -0.8922 -0.5099 29 1 1.9560 2.1162 -0.0004 30 1 6.0623 -0.0921 0.0014 31 1 6.8281 1.8874 2.1250 32 1 8.0793 2.9959 1.4970 33 1 8.0398 3.4044 4.4931 34 1 9.9310 -0.1603 0.4829 35 1 8.2732 -0.7932 0.7204 36 1 10.3520 1.3190 -1.4190 37 1 9.1005 2.4727 -1.9398 38 1 9.7592 2.5595 -0.2885 39 1 7.1264 -0.6342 -1.3915 40 1 7.5678 0.6134 -2.5821 41 1 8.7661 -0.6046 -2.0835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974556466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:50 Heat of formation + Delta-G solvation = 91.600913 kcal Electronic energy + Delta-G solvation = -24116.023402 eV Core-core repulsion = 20648.280484 eV Total energy + Delta-G solvation = -3467.742918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.18911 -39.53451 -37.72782 -34.78085 -33.77992 -32.88483 -30.98847 -30.61619 -28.45038 -27.66848 -26.67538 -25.55382 -24.00875 -22.77492 -22.23513 -20.52565 -19.83956 -18.82322 -17.79849 -16.63548 -16.31411 -16.08972 -15.77537 -14.73101 -14.65094 -14.37863 -14.06732 -13.78775 -13.73904 -13.47538 -13.31254 -13.12896 -12.40612 -12.16945 -12.00321 -11.91375 -11.59673 -11.35180 -11.27041 -10.99802 -10.92898 -10.74241 -10.48040 -10.31293 -10.17551 -9.94160 -9.80101 -9.70269 -9.57287 -9.29776 -8.57661 -8.35722 -6.75218 -5.63052 -2.97060 1.09232 1.82605 1.94295 3.44455 3.49229 3.50561 3.52467 3.63821 4.20955 4.26182 4.55874 4.66504 4.78665 4.93790 4.99901 5.05010 5.28356 5.36971 5.40652 5.60564 5.69496 5.80998 5.90406 6.01041 6.12313 6.22336 6.23564 6.28353 6.35560 6.47136 6.65825 6.70864 6.75330 6.81373 7.03161 7.61629 7.69538 7.82271 7.90877 8.07852 8.32420 8.61099 9.28803 9.89573 10.55398 11.47947 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015874 B = 0.004614 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.432618 B = 6067.607577 C = 7046.877522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.368 5.368 3 C 0.089 3.911 4 C -0.091 4.091 5 C 0.601 3.399 6 O -0.542 6.542 7 N -0.691 5.691 8 C 0.123 3.877 9 H 0.092 0.908 10 C 0.175 3.825 11 N -0.603 5.603 12 C -0.226 4.226 13 H 0.078 0.922 14 C -0.008 4.008 15 N -0.919 5.919 16 Si 0.910 3.090 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.292 1.292 20 C 0.143 3.857 21 C -0.089 4.089 22 C -0.125 4.125 23 C -0.132 4.132 24 N -0.203 5.203 25 N -0.071 5.071 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.205 0.795 30 H 0.404 0.596 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.251 0.749 34 H 0.041 0.959 35 H 0.017 0.983 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.324 -4.014 -11.917 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.154 5.154 3 C -0.067 4.067 4 C -0.231 4.231 5 C 0.384 3.616 6 O -0.418 6.418 7 N -0.341 5.341 8 C 0.018 3.982 9 H 0.110 0.890 10 C 0.050 3.950 11 N -0.329 5.329 12 C -0.355 4.355 13 H 0.096 0.904 14 C -0.204 4.204 15 N -0.567 5.567 16 Si 0.741 3.259 17 H -0.206 1.206 18 H -0.218 1.218 19 H -0.219 1.219 20 C 0.016 3.984 21 C -0.091 4.091 22 C -0.182 4.182 23 C -0.190 4.190 24 N -0.076 5.076 25 N -0.052 5.052 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.222 0.778 30 H 0.240 0.760 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.352 -4.561 -11.700 18.329 hybrid contribution 0.108 0.562 1.073 1.216 sum -13.244 -3.999 -10.627 17.445 Atomic orbital electron populations 1.22154 0.72771 1.05565 1.04703 1.50349 1.09000 1.05808 1.50199 1.23371 0.90207 0.94922 0.98235 1.21665 0.94930 0.90279 1.16206 1.16685 0.81783 0.86311 0.76833 1.90798 1.86568 1.12964 1.51499 1.45818 1.04874 1.10875 1.72536 1.22550 0.82221 0.93215 1.00213 0.89043 1.21528 0.91814 0.93432 0.88232 1.44445 1.43644 1.32806 1.12045 1.19084 1.15059 1.11753 0.89557 0.90421 1.24793 0.99248 0.97989 0.98405 1.69974 1.35052 1.19103 1.32573 0.86074 0.78901 0.77183 0.83783 1.20564 1.21820 1.21917 1.21648 0.97950 0.92388 0.86368 1.22014 0.95232 0.96514 0.95338 1.21588 0.97022 0.98812 1.00793 1.21690 1.00714 0.99021 0.97579 1.74632 1.12704 1.10530 1.09780 1.81971 0.93575 1.06493 1.23125 0.89314 0.88488 0.88230 0.77824 0.75981 0.93392 0.92683 0.93830 0.94056 0.96521 0.92833 0.93397 0.91264 0.92756 0.92932 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 11.51 59.85 0.69 1.10 16 2 N -0.37 -3.83 4.03 -67.85 -0.27 -4.11 16 3 C 0.09 1.05 11.31 -16.83 -0.19 0.86 16 4 C -0.09 -1.42 6.99 -83.55 -0.58 -2.01 16 5 C 0.60 11.01 7.82 -12.48 -0.10 10.92 16 6 O -0.54 -11.19 16.51 5.28 0.09 -11.10 16 7 N -0.69 -12.64 4.41 -53.07 -0.23 -12.87 16 8 C 0.12 2.42 2.59 -66.10 -0.17 2.25 16 9 H 0.09 1.83 7.45 -51.93 -0.39 1.44 16 10 C 0.18 4.39 4.73 -3.06 -0.01 4.38 16 11 N -0.60 -15.40 3.38 -170.07 -0.58 -15.98 16 12 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 13 H 0.08 2.12 7.83 -52.48 -0.41 1.70 16 14 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 15 N -0.92 -27.73 10.31 55.49 0.57 -27.16 16 16 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 20 C 0.14 2.93 6.12 -2.53 -0.02 2.92 16 21 C -0.09 -1.55 0.83 -152.36 -0.13 -1.67 16 22 C -0.12 -2.03 8.61 37.16 0.32 -1.71 16 23 C -0.13 -1.86 8.35 37.16 0.31 -1.55 16 24 N -0.20 -3.24 12.04 32.85 0.40 -2.85 16 25 N -0.07 -1.01 13.78 60.35 0.83 -0.17 16 26 H 0.09 0.31 8.14 -51.92 -0.42 -0.12 16 27 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.21 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.40 7.02 6.74 -40.82 -0.27 6.75 16 31 H 0.05 1.38 7.41 -51.93 -0.38 1.00 16 32 H 0.06 1.54 7.38 -51.93 -0.38 1.15 16 33 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.04 0.83 8.05 -51.93 -0.42 0.41 16 35 H 0.02 0.35 8.04 -51.93 -0.42 -0.07 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.32 7.81 -51.93 -0.41 0.91 16 39 H 0.05 0.76 6.27 -51.93 -0.33 0.43 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -35.06 340.31 -5.15 -40.20 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.92 Total: 2.73 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -0.13 Total: 8.63 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: 0.72 Total: -63.14 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.06 -5.15 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974556466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.805 kcal (2) G-P(sol) polarization free energy of solvation -35.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds