Wall clock time and date at job start Tue Mar 31 2020 03:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34817 * 126.59289 * 2 1 4 4 C 1.36595 * 106.83981 * 180.02562 * 3 2 1 5 5 C 1.47513 * 125.77351 * 179.97438 * 4 3 2 6 6 O 1.21598 * 119.99866 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00207 * 179.97438 * 5 4 3 8 8 C 1.46508 * 119.99912 * 180.02562 * 7 5 4 9 9 H 1.09002 * 110.88809 * 34.29855 * 8 7 5 10 10 C 1.54907 * 111.00222 * 270.41786 * 8 7 5 11 11 N 1.47423 * 104.83481 * 278.89414 * 10 8 7 12 12 C 1.36933 * 125.65042 * 155.83532 * 11 10 8 13 13 H 1.08000 * 120.00409 * 180.02562 * 12 11 10 14 14 C 1.38819 * 119.99940 * 0.02719 * 12 11 10 15 15 N 1.31618 * 119.99657 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99997 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47362 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47198 * 120.00330 * 16 14 12 19 19 H 1.48500 * 109.47335 * 240.00284 * 16 14 12 20 20 C 1.47020 * 108.70217 * 335.87965 * 11 10 8 21 21 C 1.54328 * 107.27319 * 1.05147 * 20 11 10 22 22 C 1.52995 * 110.71963 * 263.83613 * 21 20 11 23 23 C 1.53003 * 110.72018 * 140.55794 * 21 20 11 24 24 N 1.34400 * 108.45616 * 0.24176 * 4 3 2 25 25 N 1.28763 * 109.52738 * 359.58692 * 24 4 3 26 26 H 1.08994 * 109.47567 * 89.99904 * 1 2 3 27 27 H 1.09002 * 109.46894 * 210.00263 * 1 2 3 28 28 H 1.09002 * 109.46684 * 329.99858 * 1 2 3 29 29 H 1.07996 * 126.57964 * 0.05197 * 3 2 1 30 30 H 0.96992 * 120.00162 * 359.97438 * 7 5 4 31 31 H 1.09003 * 110.37198 * 37.73899 * 10 8 7 32 32 H 1.09002 * 110.36666 * 160.06234 * 10 8 7 33 33 H 0.96998 * 119.99257 * 179.97438 * 15 14 12 34 34 H 1.08997 * 109.88593 * 120.47259 * 20 11 10 35 35 H 1.09005 * 109.87776 * 241.47981 * 20 11 10 36 36 H 1.09004 * 109.47225 * 173.52327 * 22 21 20 37 37 H 1.09003 * 109.46992 * 293.51687 * 22 21 20 38 38 H 1.08999 * 109.47522 * 53.52180 * 22 21 20 39 39 H 1.08999 * 109.47257 * 306.48312 * 23 21 20 40 40 H 1.08998 * 109.46694 * 66.47945 * 23 21 20 41 41 H 1.08996 * 109.47026 * 186.47725 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6208 -0.0006 5 6 4.7704 1.4557 -0.0013 6 8 4.6755 2.6680 -0.0010 7 7 5.9866 0.8750 -0.0013 8 6 7.1944 1.7043 -0.0015 9 1 7.0385 2.6179 0.5722 10 6 7.6460 2.0271 -1.4477 11 7 8.3831 0.8292 -1.8892 12 6 8.5670 0.4392 -3.1889 13 1 9.1246 -0.4591 -3.4094 14 6 8.0368 1.1984 -4.2230 15 7 7.3577 2.2934 -3.9543 16 14 8.2883 0.6668 -5.9960 17 1 9.0807 -0.5887 -6.0287 18 1 6.9681 0.4351 -6.6353 19 1 9.0154 1.7310 -6.7335 20 6 8.8871 0.1220 -0.7029 21 6 8.4146 0.9112 0.5363 22 6 9.5090 1.8644 1.0205 23 6 7.9903 -0.0417 1.6556 24 7 3.5239 -0.7229 -0.0063 25 7 2.3009 -1.1257 -0.0006 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.9561 2.1162 0.0008 30 1 6.0623 -0.0920 -0.0005 31 1 6.7795 2.1964 -2.0870 32 1 8.3001 2.8991 -1.4552 33 1 6.9876 2.8241 -4.6769 34 1 8.4824 -0.8897 -0.6746 35 1 9.9763 0.0848 -0.7285 36 1 9.1164 2.4917 1.8209 37 1 10.3550 1.2870 1.3933 38 1 9.8353 2.4938 0.1926 39 1 7.2532 -0.7472 1.2722 40 1 8.8615 -0.5875 2.0177 41 1 7.5541 0.5307 2.4741 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974556472.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:53 Heat of formation + Delta-G solvation = 91.805410 kcal Electronic energy + Delta-G solvation = -24297.148887 eV Core-core repulsion = 20829.414837 eV Total energy + Delta-G solvation = -3467.734050 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.09936 -39.45778 -37.68057 -34.69874 -33.73387 -32.88659 -30.90061 -30.61611 -28.40582 -27.68719 -26.67182 -25.53367 -23.93366 -22.72716 -22.15567 -20.54129 -19.72329 -18.77627 -17.71762 -16.65244 -16.23461 -16.02985 -15.77303 -14.66457 -14.57752 -14.34649 -14.01106 -13.75201 -13.65732 -13.41127 -13.25274 -13.06415 -12.59344 -12.11759 -12.07010 -11.84373 -11.67754 -11.24972 -11.19436 -11.08893 -10.93462 -10.73376 -10.39696 -10.33382 -10.13060 -9.88372 -9.74708 -9.62983 -9.58129 -9.20616 -8.61909 -8.26195 -6.73454 -5.56612 -2.98727 1.17578 1.92573 2.02227 3.44177 3.49493 3.52063 3.58395 3.76428 4.27883 4.34796 4.54915 4.72496 4.87319 4.99413 5.06177 5.10346 5.33188 5.36161 5.38992 5.59662 5.70158 5.87534 5.89215 5.97308 6.12331 6.17600 6.26963 6.30494 6.37520 6.48135 6.56960 6.68907 6.78311 6.84676 7.06882 7.54876 7.70048 7.89610 7.96817 8.18461 8.46145 8.72173 9.29171 9.90788 10.55058 11.46385 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.005603 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.382817 B = 4996.527700 C = 6363.347799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.369 5.369 3 C 0.088 3.912 4 C -0.089 4.089 5 C 0.602 3.398 6 O -0.544 6.544 7 N -0.683 5.683 8 C 0.123 3.877 9 H 0.089 0.911 10 C 0.146 3.854 11 N -0.601 5.601 12 C -0.221 4.221 13 H 0.077 0.923 14 C -0.010 4.010 15 N -0.918 5.918 16 Si 0.911 3.089 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.291 1.291 20 C 0.142 3.858 21 C -0.087 4.087 22 C -0.127 4.127 23 C -0.132 4.132 24 N -0.201 5.201 25 N -0.072 5.072 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.204 0.796 30 H 0.404 0.596 31 H 0.113 0.887 32 H 0.022 0.978 33 H 0.251 0.749 34 H 0.023 0.977 35 H 0.024 0.976 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.927 -2.529 12.271 16.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.154 5.154 3 C -0.068 4.068 4 C -0.228 4.228 5 C 0.385 3.615 6 O -0.421 6.421 7 N -0.332 5.332 8 C 0.018 3.982 9 H 0.106 0.894 10 C 0.021 3.979 11 N -0.327 5.327 12 C -0.349 4.349 13 H 0.095 0.905 14 C -0.206 4.206 15 N -0.567 5.567 16 Si 0.742 3.258 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.218 1.218 20 C 0.016 3.984 21 C -0.088 4.088 22 C -0.185 4.185 23 C -0.190 4.190 24 N -0.075 5.075 25 N -0.053 5.053 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.221 0.779 30 H 0.240 0.760 31 H 0.131 0.869 32 H 0.039 0.961 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.006 -3.136 12.044 16.614 hybrid contribution -0.105 0.336 -1.103 1.158 sum -11.111 -2.800 10.941 15.843 Atomic orbital electron populations 1.22139 0.72868 1.05476 1.04669 1.50337 1.08946 1.05835 1.50318 1.23350 0.90229 0.94872 0.98398 1.21663 0.94945 0.90266 1.15943 1.16643 0.81761 0.86269 0.76826 1.90783 1.86600 1.12980 1.51776 1.45586 1.04633 1.10809 1.72201 1.22585 0.82110 0.92786 1.00744 0.89355 1.22310 0.98171 0.88110 0.89328 1.44460 1.61979 1.25701 1.00553 1.19088 1.28429 1.06522 0.80858 0.90509 1.24774 1.00616 0.97297 0.97902 1.69818 1.40591 1.16430 1.29821 0.86045 0.77208 0.77571 0.84962 1.20574 1.21941 1.21824 1.21420 0.96485 0.94247 0.86201 1.21840 0.95351 0.96222 0.95400 1.21682 0.97184 0.98736 1.00912 1.21728 1.00825 0.98790 0.97629 1.74634 1.12631 1.10570 1.09686 1.81965 0.93606 1.06498 1.23225 0.89350 0.88288 0.88547 0.77888 0.75958 0.86942 0.96056 0.93856 0.95945 0.95823 0.93071 0.92715 0.91739 0.92651 0.92736 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 11.51 59.85 0.69 1.16 16 2 N -0.37 -4.17 4.03 -67.85 -0.27 -4.44 16 3 C 0.09 1.12 11.31 -16.83 -0.19 0.93 16 4 C -0.09 -1.48 6.99 -83.56 -0.58 -2.06 16 5 C 0.60 11.63 7.82 -12.48 -0.10 11.53 16 6 O -0.54 -11.65 16.55 5.28 0.09 -11.57 16 7 N -0.68 -13.13 4.62 -52.77 -0.24 -13.37 16 8 C 0.12 2.45 2.61 -65.78 -0.17 2.28 16 9 H 0.09 1.75 7.53 -51.93 -0.39 1.36 16 10 C 0.15 3.66 5.27 -2.53 -0.01 3.65 16 11 N -0.60 -15.42 3.39 -170.07 -0.58 -16.00 16 12 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 13 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 14 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 15 N -0.92 -27.62 10.09 55.49 0.56 -27.06 16 16 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 C 0.14 2.96 6.41 -3.06 -0.02 2.94 16 21 C -0.09 -1.50 0.80 -152.67 -0.12 -1.63 16 22 C -0.13 -1.97 8.41 37.15 0.31 -1.66 16 23 C -0.13 -1.88 8.07 37.16 0.30 -1.58 16 24 N -0.20 -3.45 12.04 32.84 0.40 -3.05 16 25 N -0.07 -1.09 13.79 60.35 0.83 -0.26 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.20 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.40 7.54 6.71 -40.82 -0.27 7.26 16 31 H 0.11 3.28 5.87 -51.93 -0.30 2.97 16 32 H 0.02 0.57 7.80 -51.93 -0.41 0.17 16 33 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.02 0.47 7.76 -51.93 -0.40 0.06 16 35 H 0.02 0.49 7.85 -51.93 -0.41 0.09 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.12 7.57 -51.93 -0.39 0.72 16 39 H 0.05 0.80 6.42 -51.93 -0.33 0.47 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -35.04 339.07 -5.12 -40.16 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.84 Total: 4.01 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -0.15 Total: 8.78 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: 0.69 Total: -64.19 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.04 -5.12 -40.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974556472.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.964 kcal (2) G-P(sol) polarization free energy of solvation -35.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds