Wall clock time and date at job start Tue Mar 31 2020 03:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34589 * 125.74870 * 2 1 4 4 N 1.30877 * 107.62312 * 179.73208 * 3 2 1 5 5 C 1.34549 * 107.26584 * 0.36977 * 4 3 2 6 6 C 1.47876 * 126.04244 * 179.89691 * 5 4 3 7 7 O 1.21556 * 119.99692 * 179.69163 * 6 5 4 8 8 N 1.34775 * 120.00151 * 359.68072 * 6 5 4 9 9 C 1.46499 * 120.00025 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.63962 * 36.69574 * 9 8 6 11 11 C 1.54321 * 110.72384 * 273.55367 * 9 8 6 12 12 N 1.47026 * 107.26791 * 263.65067 * 11 9 8 13 13 C 1.36940 * 125.64258 * 181.03445 * 12 11 9 14 14 H 1.08003 * 119.99660 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00559 * 0.02875 * 13 12 11 16 16 N 1.31617 * 119.99776 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00230 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46764 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46723 * 120.00066 * 17 15 13 20 20 H 1.48499 * 109.47140 * 239.99844 * 17 15 13 21 21 C 1.47419 * 108.70576 * 1.06162 * 12 11 9 22 22 C 1.54905 * 104.92834 * 335.81449 * 21 12 11 23 23 C 1.53000 * 111.00859 * 155.14142 * 22 21 12 24 24 C 1.53007 * 111.00473 * 278.99353 * 22 21 12 25 25 N 1.28855 * 125.74597 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47231 * 270.01549 * 1 2 3 27 27 H 1.09001 * 109.47319 * 30.01673 * 1 2 3 28 28 H 1.09006 * 109.47373 * 150.01095 * 1 2 3 29 29 H 1.07995 * 126.18461 * 359.96858 * 3 2 1 30 30 H 0.97004 * 119.99985 * 0.02562 * 8 6 5 31 31 H 1.08998 * 109.88101 * 144.23586 * 11 9 8 32 32 H 1.08997 * 110.01327 * 23.13953 * 11 9 8 33 33 H 0.97004 * 120.00521 * 179.97438 * 16 15 13 34 34 H 1.09002 * 110.36926 * 94.70918 * 21 12 11 35 35 H 1.08995 * 110.36556 * 216.92202 * 21 12 11 36 36 H 1.09000 * 109.47194 * 61.45060 * 23 22 21 37 37 H 1.09001 * 109.47578 * 181.45505 * 23 22 21 38 38 H 1.09003 * 109.46933 * 301.45233 * 23 22 21 39 39 H 1.08997 * 109.46961 * 58.54253 * 24 22 21 40 40 H 1.09003 * 109.46792 * 178.54551 * 24 22 21 41 41 H 1.08997 * 109.46833 * 298.54519 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2512 1.0923 0.0000 4 7 3.4951 0.6852 0.0058 5 6 3.4749 -0.6602 0.0011 6 6 4.6574 -1.5481 0.0028 7 8 4.5113 -2.7548 0.0038 8 7 5.8971 -1.0194 0.0031 9 6 7.0686 -1.8990 0.0053 10 1 6.8853 -2.7846 -0.6031 11 6 7.4504 -2.2964 1.4468 12 7 8.5128 -1.3795 1.8855 13 6 9.1416 -1.4103 3.1016 14 1 9.9129 -0.6893 3.3290 15 6 8.7877 -2.3680 4.0420 16 7 7.8474 -3.2463 3.7650 17 14 9.6460 -2.4103 5.7006 18 1 10.6566 -1.3239 5.7627 19 1 8.6454 -2.2174 6.7807 20 1 10.3179 -3.7228 5.8769 21 6 8.7884 -0.4213 0.7996 22 6 8.3308 -1.1411 -0.4935 23 6 7.9718 -0.1314 -1.5856 24 6 9.4000 -2.1194 -0.9843 25 7 2.2177 -1.0458 0.0005 26 1 -0.3634 0.0003 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5137 29 1 1.9163 2.1190 -0.0005 30 1 6.0137 -0.0564 0.0026 31 1 7.8164 -3.3230 1.4637 32 1 6.5845 -2.2008 2.1019 33 1 7.6003 -3.9159 4.4220 34 1 8.2157 0.4943 0.9471 35 1 9.8542 -0.1978 0.7524 36 1 8.8511 0.4628 -1.8343 37 1 7.6293 -0.6629 -2.4735 38 1 7.1791 0.5252 -1.2269 39 1 9.6062 -2.8532 -0.2051 40 1 9.0423 -2.6298 -1.8786 41 1 10.3130 -1.5722 -1.2188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974560022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:00 Heat of formation + Delta-G solvation = 63.478316 kcal Electronic energy + Delta-G solvation = -24175.979886 eV Core-core repulsion = 20707.017480 eV Total energy + Delta-G solvation = -3468.962405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.43269 -41.19445 -39.37801 -35.79584 -35.50595 -34.45883 -32.78639 -32.60587 -30.16583 -28.67855 -27.92607 -27.38599 -25.66940 -24.52436 -23.16579 -22.17438 -21.46201 -20.28957 -19.04546 -18.68356 -17.77026 -17.45391 -17.39068 -16.70421 -16.12230 -15.80545 -15.62543 -15.34860 -15.19368 -14.74318 -14.12795 -13.96854 -13.85512 -13.75752 -13.44033 -13.15975 -12.97270 -12.86458 -12.84281 -12.72210 -12.55996 -12.06852 -11.85917 -11.75660 -11.56709 -11.51983 -11.44996 -11.38645 -11.29538 -10.75634 -10.59804 -10.05298 -8.88781 -7.82573 -5.19634 0.30133 1.13995 1.31731 1.43860 1.45787 1.56280 2.07046 2.28261 2.49792 3.10927 3.35812 3.46514 3.51716 3.72528 3.90056 3.96742 4.07732 4.35523 4.39547 4.41764 4.51364 4.66387 4.69187 4.82794 4.86580 4.90206 4.97093 5.04265 5.14200 5.19249 5.26982 5.33308 5.36267 5.46831 5.57988 5.64842 5.71240 5.73214 6.18094 6.38838 6.95874 7.08328 7.13519 7.78247 8.43241 9.27311 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.004708 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.140055 B = 5946.510984 C = 6970.969912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.301 5.301 3 C 0.208 3.792 4 N -0.509 5.509 5 C 0.120 3.880 6 C 0.605 3.395 7 O -0.567 6.567 8 N -0.676 5.676 9 C 0.135 3.865 10 H 0.083 0.917 11 C 0.194 3.806 12 N -0.620 5.620 13 C -0.235 4.235 14 H 0.090 0.910 15 C -0.072 4.072 16 N -0.956 5.956 17 Si 0.979 3.021 18 H -0.259 1.259 19 H -0.298 1.298 20 H -0.293 1.293 21 C 0.138 3.862 22 C -0.072 4.072 23 C -0.125 4.125 24 C -0.122 4.122 25 N -0.286 5.286 26 H 0.103 0.897 27 H 0.149 0.851 28 H 0.096 0.904 29 H 0.286 0.714 30 H 0.414 0.586 31 H 0.011 0.989 32 H -0.004 1.004 33 H 0.243 0.757 34 H 0.027 0.973 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.031 0.969 40 H 0.070 0.930 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.677 13.994 -13.417 23.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.096 5.096 3 C -0.087 4.087 4 N -0.236 5.236 5 C -0.159 4.159 6 C 0.388 3.612 7 O -0.443 6.443 8 N -0.328 5.328 9 C 0.029 3.971 10 H 0.101 0.899 11 C 0.068 3.932 12 N -0.346 5.346 13 C -0.364 4.364 14 H 0.108 0.892 15 C -0.264 4.264 16 N -0.606 5.606 17 Si 0.808 3.192 18 H -0.183 1.183 19 H -0.225 1.225 20 H -0.221 1.221 21 C 0.013 3.987 22 C -0.073 4.073 23 C -0.182 4.182 24 C -0.180 4.180 25 N -0.127 5.127 26 H 0.122 0.878 27 H 0.167 0.833 28 H 0.115 0.885 29 H 0.301 0.699 30 H 0.253 0.747 31 H 0.029 0.971 32 H 0.014 0.986 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.668 12.570 -13.231 22.215 hybrid contribution -0.022 -0.221 1.546 1.562 sum -12.690 12.349 -11.685 21.214 Atomic orbital electron populations 1.22781 0.68953 1.08086 1.06582 1.47843 1.10960 1.02924 1.47899 1.27569 0.84377 0.97677 0.99063 1.71200 1.23237 1.08005 1.21127 1.23331 0.91762 0.90346 1.10423 1.16709 0.82225 0.85777 0.76470 1.90782 1.86350 1.15591 1.51586 1.45548 1.03659 1.11203 1.72358 1.22297 0.84644 0.93131 0.97006 0.89907 1.21063 0.89895 0.92248 0.90003 1.44697 1.42102 1.34416 1.13414 1.19557 1.14548 1.11939 0.90348 0.89244 1.25714 1.00072 0.98190 1.02459 1.70258 1.34447 1.20718 1.35165 0.84989 0.77573 0.77508 0.79162 1.18261 1.22502 1.22064 1.21893 0.98772 0.91613 0.86410 1.22047 0.93049 0.96632 0.95619 1.21659 1.02323 0.97680 0.96557 1.21588 0.97876 0.98265 1.00223 1.74257 1.03077 1.15830 1.19563 0.87840 0.83303 0.88528 0.69888 0.74695 0.97086 0.98595 0.94796 0.95531 0.92786 0.89851 0.91441 0.92463 0.95012 0.91134 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 11.38 127.77 1.45 1.91 16 2 N -0.30 -5.83 3.72 -373.46 -1.39 -7.22 16 3 C 0.21 3.52 12.62 180.30 2.27 5.80 16 4 N -0.51 -14.47 11.09 -193.02 -2.14 -16.61 16 5 C 0.12 4.35 7.96 137.13 1.09 5.44 16 6 C 0.60 26.07 7.83 86.80 0.68 26.75 16 7 O -0.57 -28.91 16.81 -3.89 -0.07 -28.98 16 8 N -0.68 -26.49 4.56 -439.27 -2.00 -28.49 16 9 C 0.13 5.68 2.51 46.28 0.12 5.80 16 10 H 0.08 3.61 7.60 -2.39 -0.02 3.59 16 11 C 0.19 10.66 4.73 86.73 0.41 11.07 16 12 N -0.62 -32.99 3.38 -692.01 -2.34 -35.33 16 13 C -0.23 -13.59 10.28 84.03 0.86 -12.73 16 14 H 0.09 4.85 7.83 -2.91 -0.02 4.82 16 15 C -0.07 -4.32 5.49 84.86 0.47 -3.86 16 16 N -0.96 -62.36 10.31 21.65 0.22 -62.14 16 17 Si 0.98 48.02 29.55 68.60 2.03 50.05 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 20 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 21 C 0.14 5.55 6.13 86.85 0.53 6.09 16 22 C -0.07 -2.43 0.84 -50.69 -0.04 -2.47 16 23 C -0.12 -3.05 8.36 71.98 0.60 -2.45 16 24 C -0.12 -3.84 8.61 71.98 0.62 -3.22 16 25 N -0.29 -9.34 12.08 -52.43 -0.63 -9.97 16 26 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.15 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.29 0.77 8.06 -2.91 -0.02 0.75 16 30 H 0.41 14.46 6.56 -92.71 -0.61 13.85 16 31 H 0.01 0.69 7.38 -2.39 -0.02 0.67 16 32 H 0.00 -0.27 7.40 -2.39 -0.02 -0.29 16 33 H 0.24 15.51 8.31 -92.70 -0.77 14.74 16 34 H 0.03 1.04 8.04 -2.39 -0.02 1.03 16 35 H 0.05 2.05 8.05 -2.39 -0.02 2.03 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.39 6.19 -2.39 -0.01 1.37 16 39 H 0.03 1.23 7.82 -2.39 -0.02 1.21 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -90.93 339.80 3.18 -87.75 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.43 Total: 12.80 kcal Atomic # 6 Polarization: 29.06 SS G_CDS: 9.07 Total: 38.12 kcal Atomic # 7 Polarization: -151.47 SS G_CDS: -8.28 Total: -159.75 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.07 Total: -28.98 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -90.93 3.18 -87.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974560022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.230 kcal (2) G-P(sol) polarization free energy of solvation -90.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds