Wall clock time and date at job start Tue Mar 31 2020 03:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 110.64235 * 2 1 4 4 C 1.54330 * 110.85355 * 236.82704 * 2 1 3 5 5 N 1.47020 * 107.27012 * 219.67871 * 4 2 1 6 6 C 1.36934 * 125.65160 * 178.85138 * 5 4 2 7 7 H 1.07997 * 119.99815 * 191.30341 * 6 5 4 8 8 C 1.38808 * 119.99801 * 11.30220 * 6 5 4 9 9 N 1.31617 * 119.99997 * 206.02029 * 8 6 5 10 10 Si 1.86801 * 119.99990 * 26.29621 * 8 6 5 11 11 H 1.48500 * 109.47232 * 275.46606 * 10 8 6 12 12 H 1.48490 * 109.47235 * 35.47003 * 10 8 6 13 13 H 1.48501 * 109.47023 * 155.47299 * 10 8 6 14 14 C 1.47425 * 108.69958 * 358.58320 * 5 4 2 15 15 C 1.54909 * 104.83573 * 24.35874 * 14 5 4 16 16 H 1.08997 * 111.00363 * 204.91734 * 15 14 5 17 17 N 1.46496 * 111.00455 * 81.09944 * 15 14 5 18 18 C 1.34778 * 119.99952 * 86.45756 * 17 15 14 19 19 O 1.21288 * 119.99765 * 359.97438 * 18 17 15 20 20 C 1.50695 * 120.00129 * 180.02562 * 18 17 15 21 21 N 1.46507 * 109.47224 * 180.02562 * 20 18 17 22 22 N 1.28599 * 124.61712 * 269.69757 * 21 20 18 23 23 C 1.31376 * 108.71808 * 179.82768 * 22 21 20 24 24 C 1.39671 * 105.90013 * 0.41559 * 23 22 21 25 25 N 1.28595 * 124.61975 * 89.99593 * 21 20 18 26 26 H 1.08998 * 109.47197 * 296.86719 * 1 2 3 27 27 H 1.08999 * 109.46464 * 56.86271 * 1 2 3 28 28 H 1.08994 * 109.47401 * 176.86332 * 1 2 3 29 29 H 1.09000 * 109.47254 * 183.14051 * 3 2 1 30 30 H 1.09005 * 109.46654 * 303.13278 * 3 2 1 31 31 H 1.08995 * 109.47833 * 63.13691 * 3 2 1 32 32 H 1.09004 * 109.99164 * 100.19850 * 4 2 1 33 33 H 1.09007 * 109.77722 * 339.03219 * 4 2 1 34 34 H 0.97001 * 120.00455 * 179.97438 * 9 8 6 35 35 H 1.09000 * 110.36482 * 143.19726 * 14 5 4 36 36 H 1.09002 * 110.36657 * 265.41077 * 14 5 4 37 37 H 0.96998 * 120.00355 * 266.45966 * 17 15 14 38 38 H 1.09006 * 109.47369 * 299.99512 * 20 18 17 39 39 H 1.08997 * 109.47773 * 60.00013 * 20 18 17 40 40 H 1.08002 * 127.05068 * 180.16140 * 23 22 21 41 41 H 1.08005 * 127.05468 * 179.72438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 6 2.0794 -0.7891 -1.2072 5 7 3.2445 -1.5521 -0.7361 6 6 4.0043 -2.3997 -1.4973 7 1 4.7235 -3.0520 -1.0245 8 6 3.8501 -2.4204 -2.8767 9 7 4.1486 -3.5075 -3.5560 10 14 3.2261 -0.9029 -3.7696 11 1 1.7416 -0.8846 -3.7367 12 1 3.7511 0.3151 -3.1021 13 1 3.6895 -0.9331 -5.1802 14 6 3.4632 -1.2486 0.6899 15 6 2.0789 -0.7933 1.2153 16 1 2.1850 -0.1481 2.0874 17 7 1.2274 -1.9461 1.5188 18 6 1.2976 -2.5359 2.7286 19 8 2.0663 -2.1125 3.5659 20 6 0.4221 -3.7220 3.0407 21 7 0.6844 -4.1763 4.4086 22 7 1.5644 -5.0574 4.7297 23 6 1.5384 -5.2239 6.0326 24 6 0.5448 -4.3653 6.5083 25 7 0.0624 -3.7522 5.4512 26 1 -0.3633 0.4644 0.9167 27 1 -0.3632 0.5618 -0.8606 28 1 -0.3634 -1.0261 -0.0562 29 1 3.1577 1.4101 -0.0563 30 1 1.6718 1.9697 -0.8606 31 1 1.7630 1.9356 0.9167 32 1 2.3816 -0.1005 -1.9963 33 1 1.3156 -1.4715 -1.5802 34 1 4.0405 -3.5222 -4.5198 35 1 3.7959 -2.1405 1.2208 36 1 4.1945 -0.4478 0.7994 37 1 0.6129 -2.2849 0.8491 38 1 -0.6254 -3.4348 2.9483 39 1 0.6406 -4.5290 2.3413 40 1 2.1558 -5.8911 6.6158 41 1 0.2360 -4.2327 7.5348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974627538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:22 Heat of formation + Delta-G solvation = 116.460370 kcal Electronic energy + Delta-G solvation = -24255.693107 eV Core-core repulsion = 20789.028176 eV Total energy + Delta-G solvation = -3466.664931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.55576 -40.16344 -38.36398 -34.13492 -33.79450 -33.22903 -32.42284 -31.45957 -29.23691 -27.98620 -26.87442 -26.01042 -23.79144 -22.90907 -22.13170 -20.86771 -20.12568 -19.23407 -17.81382 -17.57458 -16.93656 -16.10050 -15.74756 -15.58786 -15.22274 -14.73606 -14.50326 -14.15492 -13.94032 -13.66665 -13.35961 -13.11697 -12.83389 -12.45767 -12.32223 -12.12679 -11.69989 -11.66286 -11.51974 -11.28118 -10.93855 -10.85065 -10.80611 -10.55159 -10.33095 -10.30312 -10.20816 -9.86480 -9.36249 -9.26557 -9.01400 -8.62953 -7.14715 -5.98144 -3.23032 1.71516 2.11356 2.47639 2.51840 3.21682 3.29151 3.43879 3.46641 4.11587 4.50267 4.52326 4.63704 4.72860 4.80409 4.83300 5.02257 5.03360 5.06858 5.29206 5.38434 5.46016 5.57020 5.71656 5.79322 5.88017 5.95526 5.98049 6.07930 6.13634 6.14583 6.29426 6.29760 6.46002 6.53532 6.57140 6.66574 6.76997 7.47173 7.62852 8.15219 8.26409 8.30648 8.79408 9.65729 10.11687 11.17826 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021571 B = 0.004381 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.712273 B = 6389.392071 C = 7143.193826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 C -0.133 4.133 4 C 0.125 3.875 5 N -0.606 5.606 6 C -0.241 4.241 7 H 0.094 0.906 8 C 0.021 3.979 9 N -0.904 5.904 10 Si 0.883 3.117 11 H -0.287 1.287 12 H -0.280 1.280 13 H -0.305 1.305 14 C 0.126 3.874 15 C 0.142 3.858 16 H 0.095 0.905 17 N -0.698 5.698 18 C 0.504 3.496 19 O -0.526 6.526 20 C 0.121 3.879 21 N -0.141 5.141 22 N -0.276 5.276 23 C -0.028 4.028 24 C -0.028 4.028 25 N -0.284 5.284 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.053 0.947 36 H 0.035 0.965 37 H 0.404 0.596 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.197 0.803 41 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.627 2.496 14.334 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.087 4.087 3 C -0.190 4.190 4 C 0.000 4.000 5 N -0.333 5.333 6 C -0.368 4.368 7 H 0.112 0.888 8 C -0.177 4.177 9 N -0.548 5.548 10 Si 0.715 3.285 11 H -0.214 1.214 12 H -0.207 1.207 13 H -0.233 1.233 14 C 0.000 4.000 15 C 0.037 3.963 16 H 0.113 0.887 17 N -0.350 5.350 18 C 0.287 3.713 19 O -0.402 6.402 20 C -0.003 4.003 21 N -0.041 5.041 22 N -0.117 5.117 23 C -0.211 4.211 24 C -0.211 4.211 25 N -0.124 5.124 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.240 0.760 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.214 0.786 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -11.236 3.076 13.410 17.763 hybrid contribution -0.251 0.397 -0.183 0.504 sum -11.487 3.472 13.228 17.860 Atomic orbital electron populations 1.21742 0.93879 1.01635 1.01872 1.21874 0.95634 0.95847 0.95352 1.21740 1.01913 0.93903 1.01474 1.21809 0.90517 0.93652 0.94036 1.44794 1.30438 1.51769 1.06306 1.18651 1.17850 1.11881 0.88378 0.88828 1.24790 0.99757 0.97181 0.96014 1.69892 1.51975 1.25359 1.07566 0.87014 0.77989 0.85462 0.78047 1.21434 1.20734 1.23310 1.21972 0.93238 0.98722 0.86107 1.22193 0.91180 0.86094 0.96830 0.88667 1.45719 1.42572 1.32623 1.14112 1.20300 0.83898 0.84241 0.82864 1.90773 1.38462 1.63774 1.47208 1.21722 1.02359 0.98581 0.77672 1.47310 1.23344 1.26350 1.07071 1.74113 1.11265 1.09144 1.17142 1.24782 1.02095 1.04001 0.90199 1.24747 0.98928 0.98439 0.99014 1.74010 1.21914 1.22185 0.94314 0.92354 0.92186 0.92603 0.91765 0.92245 0.92564 0.95059 0.94140 0.92754 0.92850 0.94758 0.76001 0.84667 0.84212 0.78622 0.78671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 8.07 37.16 0.30 -1.28 16 2 C -0.09 -1.30 0.80 -152.66 -0.12 -1.43 16 3 C -0.13 -1.85 8.39 37.16 0.31 -1.53 16 4 C 0.12 2.52 4.12 -3.06 -0.01 2.51 16 5 N -0.61 -14.06 3.28 -170.07 -0.56 -14.62 16 6 C -0.24 -6.71 10.57 -15.06 -0.16 -6.87 16 7 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 8 C 0.02 0.60 5.43 -17.43 -0.09 0.50 16 9 N -0.90 -27.49 13.97 55.49 0.78 -26.72 16 10 Si 0.88 22.20 24.30 -169.99 -4.13 18.07 16 11 H -0.29 -6.86 6.74 56.52 0.38 -6.48 16 12 H -0.28 -6.97 6.74 56.52 0.38 -6.59 16 13 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 14 C 0.13 2.52 6.62 -2.53 -0.02 2.50 16 15 C 0.14 2.26 2.56 -65.78 -0.17 2.09 16 16 H 0.10 1.49 7.63 -51.93 -0.40 1.10 16 17 N -0.70 -9.73 4.69 -51.73 -0.24 -9.97 16 18 C 0.50 7.42 7.90 -10.99 -0.09 7.33 16 19 O -0.53 -10.00 16.18 5.55 0.09 -9.91 16 20 C 0.12 1.37 7.02 -5.19 -0.04 1.34 16 21 N -0.14 -1.98 3.44 -11.66 -0.04 -2.02 16 22 N -0.28 -4.07 12.05 30.67 0.37 -3.70 16 23 C -0.03 -0.32 12.20 -17.21 -0.21 -0.53 16 24 C -0.03 -0.31 12.20 -17.21 -0.21 -0.52 16 25 N -0.28 -3.89 12.05 30.67 0.37 -3.52 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.60 6.36 -51.93 -0.33 0.27 16 29 H 0.06 0.99 7.59 -51.93 -0.39 0.60 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.70 3.43 -51.93 -0.18 0.53 16 33 H 0.04 0.84 7.49 -51.93 -0.39 0.46 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.03 0.68 7.81 -51.93 -0.41 0.28 16 37 H 0.40 4.84 6.89 -40.82 -0.28 4.56 16 38 H 0.14 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.14 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.20 1.47 8.06 -52.49 -0.42 1.04 16 41 H 0.20 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 333.09 15.07 5.02 5.02 Total: -1.00 -36.46 333.09 -4.63 -41.09 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.78 Total: 2.16 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -0.51 Total: 4.11 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.67 Total: -60.55 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.13 Total: 18.07 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.46 -4.63 -41.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974627538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.550 kcal (2) G-P(sol) polarization free energy of solvation -36.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds