Wall clock time and date at job start Tue Mar 31 2020 03:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 110.64235 * 2 1 4 4 C 1.54330 * 110.85355 * 236.82704 * 2 1 3 5 5 N 1.47020 * 107.27012 * 219.67871 * 4 2 1 6 6 C 1.36934 * 125.65160 * 178.85138 * 5 4 2 7 7 H 1.07997 * 119.99815 * 191.30341 * 6 5 4 8 8 C 1.38808 * 119.99801 * 11.30220 * 6 5 4 9 9 N 1.31617 * 119.99997 * 206.02029 * 8 6 5 10 10 Si 1.86801 * 119.99990 * 26.29621 * 8 6 5 11 11 H 1.48500 * 109.47232 * 275.46606 * 10 8 6 12 12 H 1.48490 * 109.47235 * 35.47003 * 10 8 6 13 13 H 1.48501 * 109.47023 * 155.47299 * 10 8 6 14 14 C 1.47425 * 108.69958 * 358.58320 * 5 4 2 15 15 C 1.54909 * 104.83573 * 24.35874 * 14 5 4 16 16 H 1.08997 * 111.00363 * 204.91734 * 15 14 5 17 17 N 1.46496 * 111.00455 * 81.09944 * 15 14 5 18 18 C 1.34778 * 119.99952 * 86.45756 * 17 15 14 19 19 O 1.21288 * 119.99765 * 359.97438 * 18 17 15 20 20 C 1.50695 * 120.00129 * 180.02562 * 18 17 15 21 21 N 1.46507 * 109.47224 * 180.02562 * 20 18 17 22 22 N 1.28599 * 124.61712 * 269.69757 * 21 20 18 23 23 C 1.31376 * 108.71808 * 179.82768 * 22 21 20 24 24 C 1.39671 * 105.90013 * 0.41559 * 23 22 21 25 25 N 1.28595 * 124.61975 * 89.99593 * 21 20 18 26 26 H 1.08998 * 109.47197 * 296.86719 * 1 2 3 27 27 H 1.08999 * 109.46464 * 56.86271 * 1 2 3 28 28 H 1.08994 * 109.47401 * 176.86332 * 1 2 3 29 29 H 1.09000 * 109.47254 * 183.14051 * 3 2 1 30 30 H 1.09005 * 109.46654 * 303.13278 * 3 2 1 31 31 H 1.08995 * 109.47833 * 63.13691 * 3 2 1 32 32 H 1.09004 * 109.99164 * 100.19850 * 4 2 1 33 33 H 1.09007 * 109.77722 * 339.03219 * 4 2 1 34 34 H 0.97001 * 120.00455 * 179.97438 * 9 8 6 35 35 H 1.09000 * 110.36482 * 143.19726 * 14 5 4 36 36 H 1.09002 * 110.36657 * 265.41077 * 14 5 4 37 37 H 0.96998 * 120.00355 * 266.45966 * 17 15 14 38 38 H 1.09006 * 109.47369 * 299.99512 * 20 18 17 39 39 H 1.08997 * 109.47773 * 60.00013 * 20 18 17 40 40 H 1.08002 * 127.05068 * 180.16140 * 23 22 21 41 41 H 1.08005 * 127.05468 * 179.72438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 6 2.0794 -0.7891 -1.2072 5 7 3.2445 -1.5521 -0.7361 6 6 4.0043 -2.3997 -1.4973 7 1 4.7235 -3.0520 -1.0245 8 6 3.8501 -2.4204 -2.8767 9 7 4.1486 -3.5075 -3.5560 10 14 3.2261 -0.9029 -3.7696 11 1 1.7416 -0.8846 -3.7367 12 1 3.7511 0.3151 -3.1021 13 1 3.6895 -0.9331 -5.1802 14 6 3.4632 -1.2486 0.6899 15 6 2.0789 -0.7933 1.2153 16 1 2.1850 -0.1481 2.0874 17 7 1.2274 -1.9461 1.5188 18 6 1.2976 -2.5359 2.7286 19 8 2.0663 -2.1125 3.5659 20 6 0.4221 -3.7220 3.0407 21 7 0.6844 -4.1763 4.4086 22 7 1.5644 -5.0574 4.7297 23 6 1.5384 -5.2239 6.0326 24 6 0.5448 -4.3653 6.5083 25 7 0.0624 -3.7522 5.4512 26 1 -0.3633 0.4644 0.9167 27 1 -0.3632 0.5618 -0.8606 28 1 -0.3634 -1.0261 -0.0562 29 1 3.1577 1.4101 -0.0563 30 1 1.6718 1.9697 -0.8606 31 1 1.7630 1.9356 0.9167 32 1 2.3816 -0.1005 -1.9963 33 1 1.3156 -1.4715 -1.5802 34 1 4.0405 -3.5222 -4.5198 35 1 3.7959 -2.1405 1.2208 36 1 4.1945 -0.4478 0.7994 37 1 0.6129 -2.2849 0.8491 38 1 -0.6254 -3.4348 2.9483 39 1 0.6406 -4.5290 2.3413 40 1 2.1558 -5.8911 6.6158 41 1 0.2360 -4.2327 7.5348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974627538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:21 Heat of formation + Delta-G solvation = 87.630548 kcal Electronic energy + Delta-G solvation = -24256.943262 eV Core-core repulsion = 20789.028176 eV Total energy + Delta-G solvation = -3467.915086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.46058 -41.45335 -39.71361 -35.80096 -34.83074 -34.47885 -33.39156 -33.36331 -30.56940 -29.12843 -27.97586 -27.66226 -25.35706 -23.78683 -23.32476 -22.32244 -21.42268 -20.50370 -19.24727 -18.64370 -18.48727 -17.45492 -16.94769 -16.81326 -16.63326 -15.82809 -15.68390 -15.48089 -15.21103 -15.05214 -14.94721 -14.46974 -14.22323 -13.79761 -13.42863 -13.38328 -13.27678 -12.99241 -12.91540 -12.60297 -12.54198 -12.32468 -11.86593 -11.78457 -11.76469 -11.66877 -11.41893 -11.31075 -11.14582 -10.81435 -10.25992 -10.19308 -9.13459 -8.19599 -5.41217 0.76341 1.25315 1.27290 1.38046 1.38431 1.47344 1.64903 2.13932 2.38771 2.98203 3.28014 3.32164 3.35916 3.50683 3.69539 3.90151 3.98419 4.03940 4.18423 4.21777 4.29697 4.48332 4.58825 4.61700 4.70909 4.80210 4.81444 4.89365 4.98086 5.02741 5.10092 5.15294 5.27669 5.37477 5.37660 5.45688 5.59524 5.68088 6.06242 6.37162 6.71844 7.03215 7.39716 7.51599 8.05304 9.00047 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021571 B = 0.004381 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.712273 B = 6389.392071 C = 7143.193826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 C -0.134 4.134 4 C 0.118 3.882 5 N -0.619 5.619 6 C -0.237 4.237 7 H 0.053 0.947 8 C -0.034 4.034 9 N -0.952 5.952 10 Si 0.950 3.050 11 H -0.262 1.262 12 H -0.276 1.276 13 H -0.313 1.313 14 C 0.123 3.877 15 C 0.156 3.844 16 H 0.104 0.896 17 N -0.691 5.691 18 C 0.504 3.496 19 O -0.573 6.573 20 C 0.121 3.879 21 N -0.157 5.157 22 N -0.320 5.320 23 C -0.027 4.027 24 C -0.024 4.024 25 N -0.307 5.307 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.020 0.980 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.025 0.975 36 H 0.034 0.966 37 H 0.415 0.585 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.229 0.771 41 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.482 4.113 15.569 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.074 4.074 3 C -0.191 4.191 4 C -0.006 4.006 5 N -0.345 5.345 6 C -0.365 4.365 7 H 0.071 0.929 8 C -0.228 4.228 9 N -0.599 5.599 10 Si 0.780 3.220 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.243 1.243 14 C -0.003 4.003 15 C 0.050 3.950 16 H 0.122 0.878 17 N -0.343 5.343 18 C 0.290 3.710 19 O -0.452 6.452 20 C -0.003 4.003 21 N -0.056 5.056 22 N -0.160 5.160 23 C -0.210 4.210 24 C -0.207 4.207 25 N -0.148 5.148 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.253 0.747 38 H 0.192 0.808 39 H 0.171 0.829 40 H 0.246 0.754 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -14.141 4.714 14.649 20.899 hybrid contribution 0.741 -0.194 -0.423 0.875 sum -13.400 4.519 14.226 20.059 Atomic orbital electron populations 1.21766 0.90551 1.02895 1.03624 1.21865 0.98090 0.95569 0.91841 1.21780 1.00522 0.93258 1.03567 1.21985 0.89120 0.93409 0.96101 1.44792 1.30984 1.51563 1.07180 1.18523 1.17341 1.11731 0.88946 0.92910 1.25413 1.01203 0.99575 0.96643 1.70014 1.54721 1.27389 1.07731 0.85928 0.78880 0.81328 0.75845 1.18755 1.20305 1.24253 1.22069 0.96306 0.97512 0.84425 1.21970 0.88947 0.86738 0.97342 0.87791 1.45655 1.42131 1.32150 1.14361 1.20903 0.83406 0.84530 0.82208 1.90746 1.40510 1.65308 1.48629 1.21944 1.03578 0.97310 0.77433 1.47509 1.23670 1.26755 1.07701 1.74075 1.12485 1.10438 1.19018 1.25461 1.02061 1.03978 0.89522 1.25471 0.97972 0.97103 1.00120 1.73972 1.22722 1.23039 0.95037 0.90046 0.91091 0.91635 0.93985 0.91060 0.89708 0.96301 0.94399 0.92843 0.95625 0.94815 0.74650 0.80762 0.82853 0.75427 0.74889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.07 71.98 0.58 -1.93 16 2 C -0.07 -1.99 0.80 -50.99 -0.04 -2.03 16 3 C -0.13 -3.29 8.39 71.98 0.60 -2.69 16 4 C 0.12 4.57 4.12 86.73 0.36 4.93 16 5 N -0.62 -29.01 3.28 -691.97 -2.27 -31.28 16 6 C -0.24 -13.70 10.57 84.03 0.89 -12.81 16 7 H 0.05 3.39 8.06 -2.91 -0.02 3.36 16 8 C -0.03 -1.96 5.43 84.86 0.46 -1.50 16 9 N -0.95 -59.76 13.97 21.65 0.30 -59.46 16 10 Si 0.95 46.22 24.30 68.60 1.67 47.89 16 11 H -0.26 -11.57 6.74 99.48 0.67 -10.90 16 12 H -0.28 -13.12 6.74 99.48 0.67 -12.45 16 13 H -0.31 -15.59 7.11 99.48 0.71 -14.88 16 14 C 0.12 4.99 6.62 86.85 0.57 5.57 16 15 C 0.16 4.71 2.56 46.39 0.12 4.83 16 16 H 0.10 3.06 7.63 -2.39 -0.02 3.04 16 17 N -0.69 -18.12 4.69 -435.96 -2.05 -20.17 16 18 C 0.50 14.36 7.90 87.66 0.69 15.05 16 19 O -0.57 -21.70 16.18 -3.05 -0.05 -21.75 16 20 C 0.12 2.56 7.02 85.63 0.60 3.16 16 21 N -0.16 -4.24 3.44 -190.80 -0.66 -4.89 16 22 N -0.32 -9.22 12.05 -56.87 -0.69 -9.91 16 23 C -0.03 -0.58 12.20 85.11 1.04 0.46 16 24 C -0.02 -0.47 12.20 85.11 1.04 0.57 16 25 N -0.31 -7.92 12.05 -56.86 -0.69 -8.61 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.14 6.36 -2.39 -0.02 1.12 16 29 H 0.04 1.21 7.59 -2.39 -0.02 1.20 16 30 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.02 0.82 3.43 -2.38 -0.01 0.81 16 33 H 0.04 1.49 7.49 -2.38 -0.02 1.48 16 34 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 35 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.03 1.37 7.81 -2.39 -0.02 1.36 16 37 H 0.42 8.97 6.89 -92.71 -0.64 8.34 16 38 H 0.18 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.23 2.89 8.06 -2.91 -0.02 2.87 16 41 H 0.23 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -83.17 333.09 2.83 -80.34 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.34 Total: 14.22 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 6.91 Total: 13.60 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -6.04 Total: -134.31 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.67 Total: 47.89 kcal Total: -83.17 2.83 -80.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974627538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.974 kcal (2) G-P(sol) polarization free energy of solvation -83.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds