Wall clock time and date at job start Tue Mar 31 2020 03:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33330 * 126.81250 * 2 1 4 4 N 1.28514 * 109.43609 * 179.97438 * 3 2 1 5 5 N 1.28711 * 110.64066 * 0.02562 * 4 3 2 6 6 H 0.97002 * 126.03470 * 179.97438 * 5 4 3 7 7 C 1.37004 * 126.81521 * 179.97438 * 2 1 3 8 8 C 1.47234 * 127.19081 * 0.05663 * 7 2 1 9 9 O 1.21612 * 119.99612 * 359.97438 * 8 7 2 10 10 N 1.34769 * 119.99958 * 180.02562 * 8 7 2 11 11 C 1.46504 * 119.99865 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.88692 * 34.29399 * 11 10 8 13 13 C 1.54913 * 111.00106 * 270.41491 * 11 10 8 14 14 N 1.47421 * 104.83260 * 278.93536 * 13 11 10 15 15 C 1.36942 * 125.64899 * 155.83972 * 14 13 11 16 16 H 1.07999 * 119.99858 * 180.02562 * 15 14 13 17 17 C 1.38812 * 119.99804 * 0.02562 * 15 14 13 18 18 N 1.31624 * 120.00159 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00022 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 59.99768 * 19 17 15 21 21 H 1.48501 * 109.47290 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47188 * 299.99722 * 19 17 15 23 23 C 1.47024 * 108.70297 * 335.87234 * 14 13 11 24 24 C 1.54426 * 107.28183 * 1.05889 * 23 14 13 25 25 C 1.52993 * 110.72711 * 263.84781 * 24 23 14 26 26 C 1.53003 * 110.75864 * 140.54312 * 24 23 14 27 27 H 1.08999 * 109.46902 * 90.02466 * 1 2 3 28 28 H 1.08994 * 109.46811 * 210.02031 * 1 2 3 29 29 H 1.08999 * 109.47279 * 330.02510 * 1 2 3 30 30 H 0.97003 * 120.00722 * 359.97438 * 10 8 7 31 31 H 1.08999 * 110.36652 * 37.77560 * 13 11 10 32 32 H 1.08998 * 110.36361 * 160.09463 * 13 11 10 33 33 H 0.96999 * 119.99866 * 180.02562 * 18 17 15 34 34 H 1.08994 * 109.88367 * 120.47913 * 23 14 13 35 35 H 1.09005 * 109.87975 * 241.64503 * 23 14 13 36 36 H 1.08998 * 109.47043 * 173.46661 * 25 24 23 37 37 H 1.09004 * 109.47062 * 293.46837 * 25 24 23 38 38 H 1.08998 * 109.47286 * 53.46575 * 25 24 23 39 39 H 1.09006 * 109.46837 * 306.51577 * 26 24 23 40 40 H 1.08995 * 109.47071 * 66.51097 * 26 24 23 41 41 H 1.09002 * 109.47085 * 186.51561 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6836 0.0005 5 7 3.6057 -0.6014 0.0004 6 1 4.4213 -1.1264 0.0003 7 6 2.3280 -1.0968 0.0005 8 6 1.9223 -2.5122 0.0000 9 8 0.7423 -2.8064 -0.0005 10 7 2.8586 -3.4815 0.0011 11 6 2.4549 -4.8898 0.0000 12 1 1.5399 -5.0314 -0.5753 13 6 2.2896 -5.4211 1.4458 14 7 3.6588 -5.7397 1.8896 15 6 4.0847 -5.7907 3.1901 16 1 5.1131 -6.0342 3.4123 17 6 3.1945 -5.5296 4.2227 18 7 1.9412 -5.2324 3.9517 19 14 3.7755 -5.5985 5.9966 20 1 4.8622 -4.6071 6.2005 21 1 2.6411 -5.2834 6.9016 22 1 4.2849 -6.9604 6.2981 23 6 4.4916 -5.9928 0.7047 24 6 3.5950 -5.7948 -0.5370 25 6 3.0392 -7.1349 -1.0227 26 6 4.3652 -5.0893 -1.6551 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3634 0.8902 0.5134 30 1 3.7998 -3.2468 0.0019 31 1 1.8527 -4.6534 2.0844 32 1 1.6705 -6.3182 1.4517 33 1 1.3192 -5.0495 4.6733 34 1 5.3224 -5.2878 0.6781 35 1 4.8704 -7.0146 0.7292 36 1 2.3207 -6.9614 -1.8237 37 1 3.8559 -7.7536 -1.3948 38 1 2.5452 -7.6447 -0.1955 39 1 4.7996 -4.1664 -1.2706 40 1 5.1598 -5.7419 -2.0167 41 1 3.6847 -4.8569 -2.4743 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974934015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:16 Heat of formation + Delta-G solvation = 80.804084 kcal Electronic energy + Delta-G solvation = -24633.240690 eV Core-core repulsion = 21165.029587 eV Total energy + Delta-G solvation = -3468.211103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 3.49 seconds Orbital eigenvalues (eV) -43.33321 -39.81226 -37.99993 -34.38717 -33.80039 -33.09112 -32.22550 -30.80944 -28.57712 -27.72426 -26.83649 -25.72408 -24.36103 -23.41026 -22.03257 -20.70780 -20.10133 -19.26258 -18.39488 -16.83747 -16.51294 -16.43916 -15.93325 -14.82886 -14.57574 -14.15673 -14.02373 -13.85886 -13.66152 -13.29715 -13.01855 -12.89707 -12.63169 -12.32369 -12.04550 -11.92009 -11.82331 -11.43526 -11.29902 -11.15129 -11.10741 -10.84017 -10.58620 -10.52592 -10.33771 -10.12419 -9.95631 -9.82193 -9.78621 -9.25488 -8.79567 -8.58632 -6.92004 -5.72222 -3.15738 0.95456 2.29329 2.44511 3.16114 3.33141 3.34659 3.39228 3.41347 4.29796 4.40912 4.66558 4.80800 4.94974 5.07284 5.09190 5.13750 5.42544 5.49335 5.63469 5.70886 5.74654 5.75776 5.87434 5.93211 5.98143 6.03535 6.09616 6.24398 6.34093 6.37966 6.44824 6.49893 6.57172 6.58630 6.80346 7.34304 7.51605 7.61448 7.79961 8.25202 8.28220 8.30839 9.12777 9.74152 10.37181 11.30409 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012573 B = 0.006030 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.460453 B = 4642.648685 C = 5815.527716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.054 3.946 3 N -0.272 5.272 4 N -0.053 5.053 5 N -0.375 5.375 6 H 0.450 0.550 7 C -0.058 4.058 8 C 0.594 3.406 9 O -0.513 6.513 10 N -0.695 5.695 11 C 0.124 3.876 12 H 0.093 0.907 13 C 0.145 3.855 14 N -0.601 5.601 15 C -0.229 4.229 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.916 5.916 19 Si 0.913 3.087 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.285 1.285 23 C 0.142 3.858 24 C -0.087 4.087 25 C -0.128 4.128 26 C -0.131 4.131 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.391 0.609 31 H 0.114 0.886 32 H 0.024 0.976 33 H 0.254 0.746 34 H 0.020 0.980 35 H 0.025 0.975 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.240 3.798 -12.010 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 N -0.140 5.140 4 N -0.034 5.034 5 N -0.102 5.102 6 H 0.296 0.704 7 C -0.192 4.192 8 C 0.376 3.624 9 O -0.387 6.387 10 N -0.344 5.344 11 C 0.019 3.981 12 H 0.111 0.889 13 C 0.020 3.980 14 N -0.327 5.327 15 C -0.357 4.357 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.564 5.564 19 Si 0.743 3.257 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.212 1.212 23 C 0.016 3.984 24 C -0.088 4.088 25 C -0.186 4.186 26 C -0.189 4.189 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.225 0.775 31 H 0.132 0.868 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.955 4.948 -11.776 12.922 hybrid contribution 1.031 -1.329 1.069 1.993 sum 2.986 3.619 -10.707 11.689 Atomic orbital electron populations 1.20306 0.84872 1.04574 1.03529 1.22295 0.98611 0.86946 1.00701 1.74900 0.95230 1.26114 1.17717 1.78133 1.16052 0.92360 1.16889 1.45441 1.08952 1.06950 1.48836 0.70362 1.22295 0.84753 0.96961 1.15226 1.16615 0.86227 0.81900 0.77611 1.90819 1.16392 1.81640 1.49808 1.45703 1.08484 1.06722 1.73540 1.22651 0.96556 0.77804 1.01111 0.88949 1.22340 0.86917 0.99738 0.89044 1.44451 1.05905 1.81829 1.00516 1.18966 0.94972 1.41040 0.80757 0.90607 1.24794 0.95664 1.01824 0.98045 1.69766 1.02952 1.53261 1.30412 0.86193 0.77323 0.77799 0.84375 1.21272 1.21518 1.21161 1.21440 0.92897 0.97832 0.86232 1.21878 0.95955 0.95672 0.95337 1.21684 1.00516 0.95360 1.01046 1.21726 0.99766 0.99642 0.97756 0.90194 0.88461 0.90493 0.77538 0.86816 0.95784 0.93508 0.96214 0.95663 0.92936 0.92583 0.91608 0.93396 0.92447 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 9.93 36.00 0.36 -0.59 16 2 C 0.05 0.82 7.29 -82.39 -0.60 0.22 16 3 N -0.27 -4.29 12.35 33.51 0.41 -3.88 16 4 N -0.05 -0.77 13.35 60.35 0.81 0.03 16 5 N -0.38 -4.72 6.97 33.31 0.23 -4.49 16 6 H 0.45 4.05 8.32 -190.33 -1.58 2.47 16 7 C -0.06 -0.87 7.17 -82.33 -0.59 -1.46 16 8 C 0.59 9.85 7.81 -12.61 -0.10 9.75 16 9 O -0.51 -9.86 14.68 5.27 0.08 -9.78 16 10 N -0.69 -10.78 4.62 -52.86 -0.24 -11.02 16 11 C 0.12 2.14 2.61 -65.78 -0.17 1.97 16 12 H 0.09 1.61 7.53 -51.93 -0.39 1.22 16 13 C 0.15 3.31 5.27 -2.53 -0.01 3.30 16 14 N -0.60 -14.04 3.39 -170.01 -0.58 -14.62 16 15 C -0.23 -6.04 10.27 -15.06 -0.15 -6.20 16 16 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 18 N -0.92 -26.12 10.09 55.49 0.56 -25.56 16 19 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.14 2.61 6.41 -3.01 -0.02 2.59 16 24 C -0.09 -1.29 0.81 -152.62 -0.12 -1.42 16 25 C -0.13 -1.75 8.41 37.15 0.31 -1.44 16 26 C -0.13 -1.50 8.08 37.16 0.30 -1.20 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.10 1.38 6.62 -51.93 -0.34 1.04 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.39 5.19 6.29 -40.82 -0.26 4.93 16 31 H 0.11 3.06 5.87 -51.93 -0.30 2.75 16 32 H 0.02 0.60 7.80 -51.93 -0.41 0.19 16 33 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 34 H 0.02 0.35 7.77 -51.93 -0.40 -0.05 16 35 H 0.03 0.48 7.85 -51.93 -0.41 0.07 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 1.04 7.57 -51.93 -0.39 0.64 16 39 H 0.05 0.50 6.42 -51.93 -0.33 0.17 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -31.56 332.90 -6.54 -38.10 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.90 Total: 4.32 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -0.90 Total: 5.24 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 1.19 Total: -59.53 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.56 -6.54 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974934015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.904 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.49 seconds