Wall clock time and date at job start Tue Mar 31 2020 03:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33330 * 126.81250 * 2 1 4 4 N 1.28514 * 109.43609 * 179.97438 * 3 2 1 5 5 N 1.28711 * 110.64066 * 0.02562 * 4 3 2 6 6 H 0.97002 * 126.03470 * 179.97438 * 5 4 3 7 7 C 1.37004 * 126.81521 * 179.97438 * 2 1 3 8 8 C 1.47234 * 127.19081 * 0.05663 * 7 2 1 9 9 O 1.21612 * 119.99612 * 359.97438 * 8 7 2 10 10 N 1.34769 * 119.99958 * 180.02562 * 8 7 2 11 11 C 1.46504 * 119.99865 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.88692 * 34.29399 * 11 10 8 13 13 C 1.54913 * 111.00106 * 270.41491 * 11 10 8 14 14 N 1.47421 * 104.83260 * 278.93536 * 13 11 10 15 15 C 1.36942 * 125.64899 * 155.83972 * 14 13 11 16 16 H 1.07999 * 119.99858 * 180.02562 * 15 14 13 17 17 C 1.38812 * 119.99804 * 0.02562 * 15 14 13 18 18 N 1.31624 * 120.00159 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00022 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 59.99768 * 19 17 15 21 21 H 1.48501 * 109.47290 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47188 * 299.99722 * 19 17 15 23 23 C 1.47024 * 108.70297 * 335.87234 * 14 13 11 24 24 C 1.54426 * 107.28183 * 1.05889 * 23 14 13 25 25 C 1.52993 * 110.72711 * 263.84781 * 24 23 14 26 26 C 1.53003 * 110.75864 * 140.54312 * 24 23 14 27 27 H 1.08999 * 109.46902 * 90.02466 * 1 2 3 28 28 H 1.08994 * 109.46811 * 210.02031 * 1 2 3 29 29 H 1.08999 * 109.47279 * 330.02510 * 1 2 3 30 30 H 0.97003 * 120.00722 * 359.97438 * 10 8 7 31 31 H 1.08999 * 110.36652 * 37.77560 * 13 11 10 32 32 H 1.08998 * 110.36361 * 160.09463 * 13 11 10 33 33 H 0.96999 * 119.99866 * 180.02562 * 18 17 15 34 34 H 1.08994 * 109.88367 * 120.47913 * 23 14 13 35 35 H 1.09005 * 109.87975 * 241.64503 * 23 14 13 36 36 H 1.08998 * 109.47043 * 173.46661 * 25 24 23 37 37 H 1.09004 * 109.47062 * 293.46837 * 25 24 23 38 38 H 1.08998 * 109.47286 * 53.46575 * 25 24 23 39 39 H 1.09006 * 109.46837 * 306.51577 * 26 24 23 40 40 H 1.08995 * 109.47071 * 66.51097 * 26 24 23 41 41 H 1.09002 * 109.47085 * 186.51561 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6836 0.0005 5 7 3.6057 -0.6014 0.0004 6 1 4.4213 -1.1264 0.0003 7 6 2.3280 -1.0968 0.0005 8 6 1.9223 -2.5122 0.0000 9 8 0.7423 -2.8064 -0.0005 10 7 2.8586 -3.4815 0.0011 11 6 2.4549 -4.8898 0.0000 12 1 1.5399 -5.0314 -0.5753 13 6 2.2896 -5.4211 1.4458 14 7 3.6588 -5.7397 1.8896 15 6 4.0847 -5.7907 3.1901 16 1 5.1131 -6.0342 3.4123 17 6 3.1945 -5.5296 4.2227 18 7 1.9412 -5.2324 3.9517 19 14 3.7755 -5.5985 5.9966 20 1 4.8622 -4.6071 6.2005 21 1 2.6411 -5.2834 6.9016 22 1 4.2849 -6.9604 6.2981 23 6 4.4916 -5.9928 0.7047 24 6 3.5950 -5.7948 -0.5370 25 6 3.0392 -7.1349 -1.0227 26 6 4.3652 -5.0893 -1.6551 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3634 0.8902 0.5134 30 1 3.7998 -3.2468 0.0019 31 1 1.8527 -4.6534 2.0844 32 1 1.6705 -6.3182 1.4517 33 1 1.3192 -5.0495 4.6733 34 1 5.3224 -5.2878 0.6781 35 1 4.8704 -7.0146 0.7292 36 1 2.3207 -6.9614 -1.8237 37 1 3.8559 -7.7536 -1.3948 38 1 2.5452 -7.6447 -0.1955 39 1 4.7996 -4.1664 -1.2706 40 1 5.1598 -5.7419 -2.0167 41 1 3.6847 -4.8569 -2.4743 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974934015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:13 Heat of formation + Delta-G solvation = 57.838912 kcal Electronic energy + Delta-G solvation = -24634.236535 eV Core-core repulsion = 21165.029587 eV Total energy + Delta-G solvation = -3469.206948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.48477 -41.20650 -39.42414 -35.83842 -35.28535 -34.39779 -33.38983 -32.60774 -30.05211 -28.88185 -27.97572 -27.40387 -25.70189 -24.83043 -23.34088 -22.14665 -21.59731 -20.52773 -19.63029 -18.71369 -17.80529 -17.60632 -17.31824 -16.64861 -15.95201 -15.75106 -15.43933 -15.26903 -14.83448 -14.65019 -14.21590 -13.99260 -13.74609 -13.69935 -13.68543 -13.06359 -13.02036 -12.99778 -12.85084 -12.62929 -12.57684 -12.30593 -12.18757 -11.80994 -11.78301 -11.66600 -11.49254 -11.37439 -11.20136 -10.76308 -10.45916 -10.04649 -8.85008 -7.76716 -5.20929 -0.23042 1.11074 1.37671 1.43943 1.45497 1.52291 1.87302 2.05505 2.47433 3.18041 3.32947 3.48454 3.55513 3.68637 3.79308 3.92447 3.95257 4.05790 4.39399 4.49764 4.60673 4.71819 4.77251 4.82952 4.87297 4.92075 4.92605 5.01102 5.08625 5.19162 5.23826 5.31950 5.34206 5.47436 5.52513 5.58548 5.64278 5.82291 6.31367 6.35049 6.98950 7.09598 7.11435 7.79252 8.41764 9.23083 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012573 B = 0.006030 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.460453 B = 4642.648685 C = 5815.527716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.049 3.951 3 N -0.291 5.291 4 N -0.052 5.052 5 N -0.352 5.352 6 H 0.465 0.535 7 C -0.068 4.068 8 C 0.595 3.405 9 O -0.543 6.543 10 N -0.685 5.685 11 C 0.137 3.863 12 H 0.093 0.907 13 C 0.152 3.848 14 N -0.617 5.617 15 C -0.232 4.232 16 H 0.083 0.917 17 C -0.065 4.065 18 N -0.945 5.945 19 Si 0.972 3.028 20 H -0.278 1.278 21 H -0.300 1.300 22 H -0.279 1.279 23 C 0.136 3.864 24 C -0.072 4.072 25 C -0.127 4.127 26 C -0.127 4.127 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.404 0.596 31 H 0.071 0.929 32 H -0.010 1.010 33 H 0.243 0.757 34 H 0.037 0.963 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.230 4.168 -13.787 15.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 N -0.158 5.158 4 N -0.034 5.034 5 N -0.082 5.082 6 H 0.316 0.684 7 C -0.203 4.203 8 C 0.379 3.621 9 O -0.419 6.419 10 N -0.336 5.336 11 C 0.032 3.968 12 H 0.110 0.890 13 C 0.025 3.975 14 N -0.343 5.343 15 C -0.361 4.361 16 H 0.101 0.899 17 C -0.258 4.258 18 N -0.595 5.595 19 Si 0.801 3.199 20 H -0.204 1.204 21 H -0.227 1.227 22 H -0.205 1.205 23 C 0.011 3.989 24 C -0.074 4.074 25 C -0.185 4.185 26 C -0.184 4.184 27 H 0.116 0.884 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.240 0.760 31 H 0.089 0.911 32 H 0.008 0.992 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.023 5.313 -13.585 15.131 hybrid contribution 0.453 -1.482 1.615 2.238 sum 4.477 3.831 -11.970 13.341 Atomic orbital electron populations 1.20351 0.83734 1.04402 1.04639 1.22686 0.99604 0.86871 0.99920 1.74911 0.95559 1.26490 1.18799 1.78077 1.15825 0.92908 1.16567 1.45393 1.08990 1.06484 1.47327 0.68446 1.22004 0.85671 0.95980 1.16607 1.16786 0.85868 0.82589 0.76816 1.90808 1.17733 1.82254 1.51109 1.45540 1.09111 1.05836 1.73081 1.22312 0.98132 0.79000 0.97373 0.88953 1.21995 0.86341 0.97205 0.91916 1.44663 1.06763 1.81753 1.01143 1.19354 0.95140 1.39266 0.82338 0.89941 1.25546 0.95910 1.02761 1.01609 1.70065 1.03896 1.55016 1.30490 0.85251 0.76518 0.78015 0.80144 1.20394 1.22673 1.20469 1.21694 0.93351 0.98021 0.85823 1.21851 0.94379 0.95997 0.95132 1.21694 1.01573 0.94695 1.00510 1.21719 1.00132 1.00089 0.96464 0.88412 0.90197 0.88980 0.76002 0.91072 0.99184 0.94741 0.94517 0.95733 0.90989 0.90311 0.94686 0.92258 0.90390 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.82 9.93 71.24 0.71 -1.11 16 2 C 0.05 1.45 7.29 42.04 0.31 1.75 16 3 N -0.29 -8.77 12.35 -47.88 -0.59 -9.36 16 4 N -0.05 -1.43 13.35 37.02 0.49 -0.93 16 5 N -0.35 -8.16 6.97 -48.52 -0.34 -8.50 16 6 H 0.47 7.17 8.32 -219.90 -1.83 5.34 16 7 C -0.07 -1.95 7.17 40.41 0.29 -1.66 16 8 C 0.60 19.43 7.81 86.61 0.68 20.11 16 9 O -0.54 -21.14 14.68 -4.07 -0.06 -21.20 16 10 N -0.69 -20.40 4.62 -439.41 -2.03 -22.43 16 11 C 0.14 4.67 2.61 46.38 0.12 4.79 16 12 H 0.09 3.19 7.53 -2.39 -0.02 3.17 16 13 C 0.15 7.15 5.27 86.86 0.46 7.61 16 14 N -0.62 -28.99 3.39 -691.79 -2.35 -31.34 16 15 C -0.23 -12.28 10.27 84.03 0.86 -11.42 16 16 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 17 C -0.07 -3.63 5.49 84.86 0.47 -3.16 16 18 N -0.94 -56.15 10.09 21.65 0.22 -55.93 16 19 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 C 0.14 4.75 6.41 86.76 0.56 5.30 16 24 C -0.07 -1.98 0.81 -50.96 -0.04 -2.02 16 25 C -0.13 -3.20 8.41 71.98 0.61 -2.60 16 26 C -0.13 -2.33 8.08 71.98 0.58 -1.75 16 27 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.08 2.30 6.62 -2.39 -0.02 2.29 16 29 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.40 9.75 6.29 -92.71 -0.58 9.17 16 31 H 0.07 4.01 5.87 -2.39 -0.01 4.00 16 32 H -0.01 -0.51 7.80 -2.39 -0.02 -0.53 16 33 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.04 1.18 7.77 -2.39 -0.02 1.16 16 35 H 0.02 0.88 7.85 -2.38 -0.02 0.86 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.03 1.09 7.57 -2.39 -0.02 1.07 16 39 H 0.06 0.97 6.42 -2.38 -0.02 0.95 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -70.77 332.90 1.62 -69.14 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -1.34 Total: 17.46 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 5.59 Total: 15.85 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -4.60 Total: -128.49 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.06 Total: -21.20 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -70.77 1.62 -69.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974934015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.980 kcal (2) G-P(sol) polarization free energy of solvation -70.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds