Wall clock time and date at job start Tue Mar 31 2020 03:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28514 * 124.44821 * 2 1 4 4 C 1.31131 * 109.06110 * 179.97438 * 3 2 1 5 5 C 1.40920 * 105.77623 * 0.02562 * 4 3 2 6 6 C 1.47801 * 127.23662 * 180.02562 * 5 4 3 7 7 O 1.21562 * 120.00177 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00135 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00088 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.88763 * 34.30122 * 9 8 6 11 11 C 1.54909 * 111.00631 * 270.41754 * 9 8 6 12 12 N 1.47424 * 104.83182 * 278.93671 * 11 9 8 13 13 C 1.36941 * 125.64803 * 155.83186 * 12 11 9 14 14 H 1.08002 * 119.99957 * 180.02562 * 13 12 11 15 15 C 1.38817 * 119.99826 * 0.02924 * 13 12 11 16 16 N 1.31612 * 119.99866 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99854 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47213 * 59.99649 * 17 15 13 19 19 H 1.48495 * 109.47172 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46994 * 299.99559 * 17 15 13 21 21 C 1.47022 * 108.70618 * 335.87008 * 12 11 9 22 22 C 1.54428 * 107.27612 * 1.06041 * 21 12 11 23 23 C 1.53001 * 110.72553 * 263.84477 * 22 21 12 24 24 C 1.53011 * 110.75832 * 140.54353 * 22 21 12 25 25 N 1.28594 * 124.43834 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.46658 * 270.02296 * 1 2 3 27 27 H 1.09002 * 109.46993 * 30.01528 * 1 2 3 28 28 H 1.08995 * 109.47341 * 150.02249 * 1 2 3 29 29 H 1.08001 * 127.10991 * 180.02562 * 4 3 2 30 30 H 0.97007 * 120.00007 * 359.97438 * 8 6 5 31 31 H 1.09003 * 110.36762 * 37.77415 * 11 9 8 32 32 H 1.08997 * 110.36960 * 160.09881 * 11 9 8 33 33 H 0.97007 * 119.99540 * 180.02562 * 16 15 13 34 34 H 1.08998 * 109.88499 * 120.47588 * 21 12 11 35 35 H 1.08996 * 109.88137 * 241.49005 * 21 12 11 36 36 H 1.09005 * 109.47189 * 173.47118 * 23 22 21 37 37 H 1.09003 * 109.47165 * 293.47254 * 23 22 21 38 38 H 1.09002 * 109.46702 * 53.47108 * 23 22 21 39 39 H 1.08997 * 109.46732 * 306.51065 * 24 22 21 40 40 H 1.08996 * 109.47132 * 66.50997 * 24 22 21 41 41 H 1.09002 * 109.46751 * 186.51187 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1920 1.0598 0.0000 4 6 3.4563 0.7118 0.0006 5 6 3.4658 -0.6973 0.0003 6 6 4.6486 -1.5837 0.0013 7 8 5.7663 -1.1058 0.0029 8 7 4.4879 -2.9218 0.0003 9 6 5.6603 -3.8004 0.0007 10 1 6.4753 -3.3605 0.5755 11 6 6.1121 -4.1241 -1.4452 12 7 5.2129 -5.2050 -1.8885 13 6 4.9035 -5.5029 -3.1888 14 1 4.2307 -6.3182 -3.4106 15 6 5.4546 -4.7571 -4.2217 16 7 6.2741 -3.7634 -3.9513 17 14 5.0331 -5.1639 -5.9955 18 1 3.5681 -5.0313 -6.1991 19 1 5.7451 -4.2268 -6.9009 20 1 5.4506 -6.5570 -6.2965 21 6 4.7027 -5.9097 -0.7033 22 6 5.2985 -5.2103 0.5380 23 6 6.5512 -5.9426 1.0230 24 6 4.2592 -5.1130 1.6567 25 7 2.1922 -1.0606 0.0005 26 1 -0.3632 0.0004 1.0277 27 1 -0.3633 0.8899 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 4.3131 1.3693 0.0011 30 1 3.5960 -3.3033 -0.0006 31 1 5.9961 -3.2484 -2.0839 32 1 7.1473 -4.4651 -1.4519 33 1 6.6589 -3.2420 -4.6732 34 1 3.6148 -5.8496 -0.6760 35 1 5.0157 -6.9534 -0.7293 36 1 7.0196 -5.3702 1.8238 37 1 6.2742 -6.9289 1.3954 38 1 7.2523 -6.0504 0.1954 39 1 3.3554 -4.6400 1.2728 40 1 4.0203 -6.1130 2.0186 41 1 4.6617 -4.5168 2.4756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977335687.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:59 Heat of formation + Delta-G solvation = 105.628390 kcal Electronic energy + Delta-G solvation = -24408.974338 eV Core-core repulsion = 20941.839697 eV Total energy + Delta-G solvation = -3467.134641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.56505 -39.56430 -37.76338 -33.84206 -33.76961 -33.16464 -32.33874 -30.66666 -28.53365 -27.75366 -26.74714 -25.57641 -24.24823 -22.91509 -22.01677 -20.56757 -19.70672 -18.77066 -17.53274 -16.96021 -16.80356 -16.58437 -15.70437 -14.78994 -14.67129 -14.28720 -14.02292 -13.76071 -13.69552 -13.23171 -13.10332 -13.08115 -12.65718 -12.15209 -11.93628 -11.83372 -11.69849 -11.26226 -11.13330 -10.97756 -10.97020 -10.74114 -10.40648 -10.36337 -10.20980 -9.93841 -9.80774 -9.67419 -9.64395 -9.36715 -8.64978 -8.32908 -6.77397 -5.59356 -3.02123 1.46695 2.04803 2.17103 3.42029 3.46176 3.48334 3.49698 3.70058 4.02580 4.51717 4.77955 4.82259 5.01073 5.03801 5.05637 5.26181 5.29977 5.34639 5.55928 5.66076 5.74357 5.83380 5.92224 6.03287 6.07374 6.13734 6.22096 6.31160 6.43271 6.52688 6.53027 6.63963 6.73295 6.78300 7.01268 7.51528 7.65282 7.89185 7.98639 8.21516 8.42929 8.65043 9.25774 9.87369 10.51595 11.43343 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.005794 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.299123 B = 4831.105584 C = 6015.796742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.150 5.150 3 N -0.296 5.296 4 C 0.033 3.967 5 C -0.033 4.033 6 C 0.606 3.394 7 O -0.531 6.531 8 N -0.684 5.684 9 C 0.122 3.878 10 H 0.090 0.910 11 C 0.146 3.854 12 N -0.601 5.601 13 C -0.224 4.224 14 H 0.076 0.924 15 C -0.009 4.009 16 N -0.917 5.917 17 Si 0.912 3.088 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.286 1.286 21 C 0.143 3.857 22 C -0.087 4.087 23 C -0.128 4.128 24 C -0.131 4.131 25 N -0.251 5.251 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.208 0.792 30 H 0.403 0.597 31 H 0.113 0.887 32 H 0.023 0.977 33 H 0.253 0.747 34 H 0.021 0.979 35 H 0.024 0.976 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.516 4.343 12.065 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.052 5.052 3 N -0.136 5.136 4 C -0.151 4.151 5 C -0.197 4.197 6 C 0.388 3.612 7 O -0.406 6.406 8 N -0.333 5.333 9 C 0.017 3.983 10 H 0.108 0.892 11 C 0.020 3.980 12 N -0.327 5.327 13 C -0.353 4.353 14 H 0.093 0.907 15 C -0.205 4.205 16 N -0.565 5.565 17 Si 0.743 3.257 18 H -0.214 1.214 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.017 3.983 22 C -0.088 4.088 23 C -0.185 4.185 24 C -0.189 4.189 25 N -0.099 5.099 26 H 0.109 0.891 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.224 0.776 30 H 0.238 0.762 31 H 0.131 0.869 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.021 4.733 11.835 16.214 hybrid contribution 0.150 -0.422 -1.072 1.162 sum -9.872 4.311 10.763 15.227 Atomic orbital electron populations 1.22190 0.70026 1.06171 1.05006 1.47984 1.09079 0.99357 1.48791 1.73958 1.03941 1.15589 1.20152 1.24822 0.94133 0.93859 1.02256 1.23262 0.91385 0.94918 1.10097 1.16533 0.85727 0.81775 0.77134 1.90796 1.23587 1.75360 1.50870 1.45639 1.10714 1.04640 1.72324 1.22611 0.87016 0.87809 1.00848 0.89233 1.22322 0.91554 0.94828 0.89252 1.44442 1.52933 1.34778 1.00515 1.18973 1.22939 1.12511 0.80851 0.90660 1.24783 0.99490 0.98296 0.97921 1.69786 1.34630 1.21898 1.30199 0.86201 0.77597 0.77355 0.84594 1.21357 1.21614 1.21235 1.21427 0.95775 0.94862 0.86236 1.21861 0.96234 0.95347 0.95359 1.21684 0.96736 0.99158 1.00962 1.21723 0.98301 1.01213 0.97673 1.74408 1.03227 1.15458 1.16807 0.89097 0.87783 0.87623 0.77573 0.76159 0.86896 0.95957 0.93641 0.96103 0.95819 0.93017 0.92703 0.91695 0.92840 0.92717 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.75 11.55 59.85 0.69 1.44 16 2 N -0.15 -1.95 4.35 -16.64 -0.07 -2.02 16 3 N -0.30 -4.17 12.01 30.90 0.37 -3.80 16 4 C 0.03 0.49 12.04 -16.84 -0.20 0.29 16 5 C -0.03 -0.56 7.21 -82.68 -0.60 -1.16 16 6 C 0.61 11.72 7.83 -12.35 -0.10 11.62 16 7 O -0.53 -11.57 16.64 5.31 0.09 -11.48 16 8 N -0.68 -12.77 4.62 -52.68 -0.24 -13.02 16 9 C 0.12 2.39 2.61 -65.78 -0.17 2.22 16 10 H 0.09 1.75 7.53 -51.93 -0.39 1.35 16 11 C 0.15 3.60 5.27 -2.53 -0.01 3.59 16 12 N -0.60 -15.13 3.39 -170.01 -0.58 -15.70 16 13 C -0.22 -6.24 10.27 -15.06 -0.15 -6.40 16 14 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 15 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 16 N -0.92 -27.37 10.09 55.49 0.56 -26.81 16 17 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 C 0.14 2.90 6.41 -3.01 -0.02 2.88 16 22 C -0.09 -1.46 0.81 -152.61 -0.12 -1.58 16 23 C -0.13 -1.93 8.41 37.16 0.31 -1.61 16 24 C -0.13 -1.79 8.08 37.16 0.30 -1.49 16 25 N -0.25 -3.89 11.84 33.42 0.40 -3.49 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.21 2.58 8.06 -52.49 -0.42 2.16 16 30 H 0.40 7.13 6.80 -40.82 -0.28 6.86 16 31 H 0.11 3.26 5.87 -51.93 -0.30 2.95 16 32 H 0.02 0.59 7.80 -51.93 -0.41 0.19 16 33 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.02 0.42 7.77 -51.93 -0.40 0.02 16 35 H 0.02 0.48 7.85 -51.93 -0.41 0.08 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.11 7.57 -51.93 -0.39 0.71 16 39 H 0.05 0.73 6.42 -51.93 -0.33 0.40 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 338.60 15.07 5.10 5.10 Total: -1.00 -34.02 338.60 -5.41 -39.43 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.84 Total: 4.94 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -0.17 Total: 9.45 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: 0.43 Total: -64.84 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.02 -5.41 -39.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977335687.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.063 kcal (2) G-P(sol) polarization free energy of solvation -34.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds