Wall clock time and date at job start Tue Mar 31 2020 03:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28514 * 124.44821 * 2 1 4 4 C 1.31131 * 109.06110 * 179.97438 * 3 2 1 5 5 C 1.40920 * 105.77623 * 0.02562 * 4 3 2 6 6 C 1.47801 * 127.23662 * 180.02562 * 5 4 3 7 7 O 1.21562 * 120.00177 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00135 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00088 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.88763 * 34.30122 * 9 8 6 11 11 C 1.54909 * 111.00631 * 270.41754 * 9 8 6 12 12 N 1.47424 * 104.83182 * 278.93671 * 11 9 8 13 13 C 1.36941 * 125.64803 * 155.83186 * 12 11 9 14 14 H 1.08002 * 119.99957 * 180.02562 * 13 12 11 15 15 C 1.38817 * 119.99826 * 0.02924 * 13 12 11 16 16 N 1.31612 * 119.99866 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99854 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47213 * 59.99649 * 17 15 13 19 19 H 1.48495 * 109.47172 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46994 * 299.99559 * 17 15 13 21 21 C 1.47022 * 108.70618 * 335.87008 * 12 11 9 22 22 C 1.54428 * 107.27612 * 1.06041 * 21 12 11 23 23 C 1.53001 * 110.72553 * 263.84477 * 22 21 12 24 24 C 1.53011 * 110.75832 * 140.54353 * 22 21 12 25 25 N 1.28594 * 124.43834 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.46658 * 270.02296 * 1 2 3 27 27 H 1.09002 * 109.46993 * 30.01528 * 1 2 3 28 28 H 1.08995 * 109.47341 * 150.02249 * 1 2 3 29 29 H 1.08001 * 127.10991 * 180.02562 * 4 3 2 30 30 H 0.97007 * 120.00007 * 359.97438 * 8 6 5 31 31 H 1.09003 * 110.36762 * 37.77415 * 11 9 8 32 32 H 1.08997 * 110.36960 * 160.09881 * 11 9 8 33 33 H 0.97007 * 119.99540 * 180.02562 * 16 15 13 34 34 H 1.08998 * 109.88499 * 120.47588 * 21 12 11 35 35 H 1.08996 * 109.88137 * 241.49005 * 21 12 11 36 36 H 1.09005 * 109.47189 * 173.47118 * 23 22 21 37 37 H 1.09003 * 109.47165 * 293.47254 * 23 22 21 38 38 H 1.09002 * 109.46702 * 53.47108 * 23 22 21 39 39 H 1.08997 * 109.46732 * 306.51065 * 24 22 21 40 40 H 1.08996 * 109.47132 * 66.50997 * 24 22 21 41 41 H 1.09002 * 109.46751 * 186.51187 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1920 1.0598 0.0000 4 6 3.4563 0.7118 0.0006 5 6 3.4658 -0.6973 0.0003 6 6 4.6486 -1.5837 0.0013 7 8 5.7663 -1.1058 0.0029 8 7 4.4879 -2.9218 0.0003 9 6 5.6603 -3.8004 0.0007 10 1 6.4753 -3.3605 0.5755 11 6 6.1121 -4.1241 -1.4452 12 7 5.2129 -5.2050 -1.8885 13 6 4.9035 -5.5029 -3.1888 14 1 4.2307 -6.3182 -3.4106 15 6 5.4546 -4.7571 -4.2217 16 7 6.2741 -3.7634 -3.9513 17 14 5.0331 -5.1639 -5.9955 18 1 3.5681 -5.0313 -6.1991 19 1 5.7451 -4.2268 -6.9009 20 1 5.4506 -6.5570 -6.2965 21 6 4.7027 -5.9097 -0.7033 22 6 5.2985 -5.2103 0.5380 23 6 6.5512 -5.9426 1.0230 24 6 4.2592 -5.1130 1.6567 25 7 2.1922 -1.0606 0.0005 26 1 -0.3632 0.0004 1.0277 27 1 -0.3633 0.8899 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 4.3131 1.3693 0.0011 30 1 3.5960 -3.3033 -0.0006 31 1 5.9961 -3.2484 -2.0839 32 1 7.1473 -4.4651 -1.4519 33 1 6.6589 -3.2420 -4.6732 34 1 3.6148 -5.8496 -0.6760 35 1 5.0157 -6.9534 -0.7293 36 1 7.0196 -5.3702 1.8238 37 1 6.2742 -6.9289 1.3954 38 1 7.2523 -6.0504 0.1954 39 1 3.3554 -4.6400 1.2728 40 1 4.0203 -6.1130 2.0186 41 1 4.6617 -4.5168 2.4756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977335687.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:58 Heat of formation + Delta-G solvation = 80.487806 kcal Electronic energy + Delta-G solvation = -24410.064515 eV Core-core repulsion = 20941.839697 eV Total energy + Delta-G solvation = -3468.224818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.69022 -41.13007 -39.34760 -35.68345 -34.86254 -34.56100 -33.57228 -32.59343 -30.03856 -28.87900 -27.97801 -27.39601 -25.70170 -24.46707 -23.08622 -22.28859 -21.28846 -20.22018 -18.79245 -18.68293 -18.01962 -17.91559 -17.32620 -16.60422 -15.91085 -15.78241 -15.64727 -15.33557 -15.22498 -14.64183 -14.19134 -13.84659 -13.69568 -13.67909 -13.62883 -13.10347 -13.01300 -12.97956 -12.81533 -12.60721 -12.55281 -12.16272 -12.13055 -11.79513 -11.76347 -11.53160 -11.46130 -11.35661 -11.23612 -10.74660 -10.48422 -9.96542 -8.83132 -7.74260 -5.19027 0.22388 0.87059 1.28400 1.43590 1.46826 1.53461 2.07767 2.27509 2.49293 2.88546 3.34857 3.57094 3.70078 3.78818 3.98442 4.01771 4.09265 4.30105 4.31968 4.42476 4.47967 4.53170 4.66446 4.74203 4.86109 4.89129 4.92724 4.94066 5.04954 5.12699 5.21871 5.29421 5.34769 5.48626 5.54278 5.55103 5.67554 5.84458 6.33004 6.48715 7.02269 7.10844 7.16482 7.80701 8.44440 9.26103 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.005794 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.299123 B = 4831.105584 C = 6015.796742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.134 5.134 3 N -0.295 5.295 4 C 0.028 3.972 5 C -0.064 4.064 6 C 0.604 3.396 7 O -0.565 6.565 8 N -0.678 5.678 9 C 0.133 3.867 10 H 0.090 0.910 11 C 0.154 3.846 12 N -0.618 5.618 13 C -0.233 4.233 14 H 0.083 0.917 15 C -0.069 4.069 16 N -0.948 5.948 17 Si 0.976 3.024 18 H -0.278 1.278 19 H -0.298 1.298 20 H -0.276 1.276 21 C 0.138 3.862 22 C -0.073 4.073 23 C -0.125 4.125 24 C -0.124 4.124 25 N -0.254 5.254 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.222 0.778 30 H 0.408 0.592 31 H 0.069 0.931 32 H -0.008 1.008 33 H 0.243 0.757 34 H 0.030 0.970 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.987 3.721 13.568 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.039 5.039 3 N -0.136 5.136 4 C -0.155 4.155 5 C -0.225 4.225 6 C 0.388 3.612 7 O -0.442 6.442 8 N -0.328 5.328 9 C 0.027 3.973 10 H 0.108 0.892 11 C 0.028 3.972 12 N -0.344 5.344 13 C -0.362 4.362 14 H 0.101 0.899 15 C -0.261 4.261 16 N -0.598 5.598 17 Si 0.805 3.195 18 H -0.204 1.204 19 H -0.225 1.225 20 H -0.202 1.202 21 C 0.013 3.987 22 C -0.074 4.074 23 C -0.183 4.183 24 C -0.182 4.182 25 N -0.104 5.104 26 H 0.137 0.863 27 H 0.144 0.856 28 H 0.137 0.863 29 H 0.238 0.762 30 H 0.245 0.755 31 H 0.087 0.913 32 H 0.010 0.990 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.531 4.078 13.369 18.772 hybrid contribution 0.792 -0.228 -1.530 1.738 sum -11.739 3.850 11.839 17.111 Atomic orbital electron populations 1.22813 0.66735 1.07967 1.07438 1.48657 1.10722 0.98496 1.46029 1.73978 1.03580 1.15795 1.20235 1.25104 0.95091 0.93333 1.01925 1.22914 0.91253 0.95317 1.13021 1.16871 0.86159 0.82052 0.76121 1.90764 1.25175 1.75941 1.52368 1.45556 1.10593 1.04528 1.72103 1.22342 0.87629 0.89859 0.97454 0.89248 1.21965 0.90397 0.93024 0.91843 1.44672 1.52957 1.35519 1.01239 1.19393 1.22300 1.12179 0.82331 0.89906 1.25618 1.00000 0.98578 1.01932 1.70099 1.36059 1.23084 1.30542 0.85180 0.77495 0.77135 0.79697 1.20377 1.22493 1.20201 1.21659 0.96248 0.94884 0.85890 1.21852 0.97918 0.92526 0.95094 1.21686 0.95353 1.00702 1.00525 1.21684 0.96942 1.03072 0.96461 1.74350 1.02827 1.16420 1.16829 0.86307 0.85626 0.86295 0.76174 0.75467 0.91334 0.98996 0.94738 0.95163 0.95389 0.90997 0.90123 0.94541 0.92879 0.90215 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 11.55 127.77 1.48 2.44 16 2 N -0.13 -3.21 4.35 -206.55 -0.90 -4.11 16 3 N -0.30 -7.83 12.01 -56.17 -0.67 -8.50 16 4 C 0.03 0.82 12.04 85.45 1.03 1.85 16 5 C -0.06 -2.16 7.21 42.24 0.30 -1.86 16 6 C 0.60 23.84 7.83 86.77 0.68 24.52 16 7 O -0.56 -25.55 16.64 -3.91 -0.07 -25.62 16 8 N -0.68 -25.47 4.62 -438.87 -2.03 -27.50 16 9 C 0.13 5.26 2.61 46.38 0.12 5.38 16 10 H 0.09 3.55 7.53 -2.39 -0.02 3.53 16 11 C 0.15 7.96 5.27 86.86 0.46 8.41 16 12 N -0.62 -31.70 3.39 -691.78 -2.35 -34.05 16 13 C -0.23 -13.14 10.27 84.03 0.86 -12.27 16 14 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 15 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 16 N -0.95 -59.20 10.09 21.65 0.22 -58.98 16 17 Si 0.98 46.94 29.55 68.60 2.03 48.96 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 C 0.14 5.45 6.41 86.76 0.56 6.00 16 22 C -0.07 -2.33 0.81 -50.95 -0.04 -2.37 16 23 C -0.13 -3.54 8.41 71.98 0.61 -2.94 16 24 C -0.12 -2.96 8.08 71.99 0.58 -2.38 16 25 N -0.25 -7.54 11.84 -48.17 -0.57 -8.11 16 26 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.22 5.51 8.06 -2.91 -0.02 5.49 16 30 H 0.41 14.22 6.80 -92.70 -0.63 13.59 16 31 H 0.07 4.20 5.87 -2.39 -0.01 4.18 16 32 H -0.01 -0.44 7.80 -2.39 -0.02 -0.45 16 33 H 0.24 14.96 8.31 -92.70 -0.77 14.19 16 34 H 0.03 1.15 7.77 -2.39 -0.02 1.13 16 35 H 0.03 1.10 7.85 -2.39 -0.02 1.08 16 36 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.04 1.23 7.57 -2.39 -0.02 1.21 16 39 H 0.05 1.28 6.42 -2.39 -0.02 1.27 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -77.06 338.60 3.18 -73.89 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.42 Total: 20.78 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 7.10 Total: 23.23 kcal Atomic # 7 Polarization: -134.95 SS G_CDS: -6.30 Total: -141.25 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.07 Total: -25.62 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Total: -77.06 3.18 -73.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977335687.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.374 kcal (2) G-P(sol) polarization free energy of solvation -77.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds